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PROSITE documentation PDOC00546

Ribosomal protein S19e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities [1,2]. One of these families consists of:

  • Mammalian S19.
  • Drosophila S19.
  • Ascaris lumbricoides S19g (ALEP-1) and S19s.
  • Plants S19.
  • Yeast RPS19A/RPS19B (RP55A/RP55B).
  • Aspergillus S16.
  • Archebacterial S19e.

These proteins have 143 to 155 amino acids. As a signature pattern, we selected a well conserved stretch of 20 residues in the C-terminal part of these proteins.

Expert(s) to contact by email:

Bernard V.

Last update:

December 2001 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S19E, PS00628; Ribosomal protein S19e signature  (PATTERN)
Consensus pattern: P-x(6)-[SANG]-x(2)-[LIVMAC]-x-R-x-[ALIV]-[LV]-[QH]-x-L-[EQ]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00628
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00628
• Scan Swiss-Prot/TrEMBL entries against PS00628
• view ligand binding statistics
Matching PDB structures: 3IZB [ALL]

References:

1 AuthorsEtter A., Aboutanos M., Tobler H., Mueller F.
TitleEliminated chromatin of Ascaris contains a gene that encodes a putative ribosomal protein.
SourceProc. Natl. Acad. Sci. U.S.A. 88:1593-1596(1991).
PubMed ID2000367
2 AuthorsSuzuki K., Olvera J., Wool I.G.
TitleThe primary structure of rat ribosomal protein S19.
SourceBiochimie 72:299-302(1990).
PubMed ID2116918

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