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PROSITE documentation PDOC00601

Ribosomal protein S26e signature

Description:

A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian S26 [1].
  • Octopus S26 [2].
  • Drosophila S26 (DS31) [3].
  • Plant cytoplasmic S26.
  • Fungi S26 [4].

These proteins have 114 to 127 amino acids. As a signature pattern, we selected a conserved octapeptide in the central part of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S26E, PS00733; Ribosomal protein S26e signature  (PATTERN)
Consensus pattern: [YH]-C-[VI]-[SA]-C-A-I-H
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00733
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00733
• Scan Swiss-Prot/TrEMBL entries against PS00733
• view ligand binding statistics

References:

1 AuthorsKuwano Y., Nakanishi O., Nabeshima Y., Tanaka T., Ogata K.
TitleMolecular cloning and nucleotide sequence of DNA complementary to rat ribosomal protein S26 messenger RNA.
SourceJ. Biochem. 97:983-992(1985).
PubMed ID2993263
2 AuthorsZinov'eva R.D., Tomarev S.I.
SourceDokl. Akad. Nauk SSSR 304:464-469(1989).
3 AuthorsItoh N., Ohta K., Ohta M., Kawasaki T., Yamashina I.
TitleThe nucleotide sequence of a gene for a putative ribosomal protein S31 of Drosophila.
SourceNucleic Acids Res. 17:2121-2121(1989).
PubMed ID2928115
4 AuthorsWu M., Tan H.M.
TitleThe Saccharomyces cerevisiae homologue of ribosomal protein S26.
SourceGene 150:401-402(1994).
PubMed ID7821815

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