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| PROSITE documentation PDOC00622 |
Glycosyl hydrolases family 11 active sites signatures
Description:
The microbial degradation of cellulose and xylans requires several types of
enzymes such as endoglucanases (EC 3.2.1.4), cellobiohydrolases (EC 3.2.1.91)
(exoglucanases), or xylanases (EC 3.2.1.8) [1,2]. Fungi and bacteria produces
a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the
basis of sequence similarities, can be classified into families. One of these
families is known as the cellulase family G [3] or as the glycosyl hydrolases
family 11 [4,E1]. The enzymes which are currently known to belong to this
family are listed below.
- Aspergillus awamori xylanase C (xynC).
- Bacillus circulans, pumilus, stearothermophilus and subtilis xylanase
(xynA).
- Clostridium acetobutylicum xylanase (xynB).
- Clostridium stercorarium xylanase A (xynA).
- Fibrobacter succinogenes xylanase C (xynC) which consist of two catalytic
domains that both belong to family 10.
- Neocallimastix patriciarum xylanase A (xynA).
- Ruminococcus flavefaciens bifunctional xylanase XYLA (xynA). This protein
consists of three domains: a N-terminal xylanase catalytic domain that
belongs to family 11 of glycosyl hydrolases; a central domain composed of
short repeats of Gln, Asn an Trp, and a C-terminal xylanase catalytic
domain that belongs to family 10 of glycosyl hydrolases.
- Schizophyllum commune xylanase A.
- Streptomyces lividans xylanases B (xlnB) and C (xlnC).
- Trichoderma reesei xylanases I and II.
Two of the conserved regions in these enzymes are centered on glutamic acid
residues which have both been shown [5], in Bacillus pumilis xylanase, to be
necessary for catalytic activity. We have used both regions as signature
patterns.
Expert(s) to contact by email:
Henrissat B.
Last update:
April 2006 / Pattern revised.
Technical section:
PROSITE methods (with tools and information) covered by this documentation:
| GLYCOSYL_HYDROL_F11_1, PS00776; Glycosyl hydrolases family 11 active site signature 1 (PATTERN) |
| Consensus pattern: |
[PSA]-[LQ]-x-E-[YF]-Y-[LIVM](2)-[DE]-x-[FYWHN]
E is an active site residue |
| Sequences known to belong to this class detected by the pattern: |
ALL, except for Piromyces sp. xynA |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
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| Matching PDB structures:
1AXK 1BCX 1BK1 1BVV ... [ALL] |
| GLYCOSYL_HYDROL_F11_2, PS00777; Glycosyl hydrolases family 11 active site signature 2 (PATTERN) |
| Consensus pattern: |
[LIVMF]-x(2)-E-[AG]-[YWG]-[QRFGS]-[SG]-[STAN]-G-x-[SAF]
E is an active site residue |
| Sequences known to belong to this class detected by the pattern: |
ALL, except for Piromyces sp. xynA |
| Other sequence(s) detected in Swiss-Prot: |
3. |
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|
| Matching PDB structures:
1AXK 1BK1 1BVV 1C5H ... [ALL] |
References:
| 2 |
Authors | Gilkes N.R., Henrissat B., Kilburn D.G., Miller R.C. Jr., Warren R.A.J. |
| Title | Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families. |
| Source | Microbiol. Rev. 55:303-315(1991). |
| PubMed ID | 1886523 |
| 3 |
Authors | Henrissat B., Claeyssens M., Tomme P., Lemesle L., Mornon J.-P. |
| Title | Cellulase families revealed by hydrophobic cluster analysis. |
| Source | Gene 81:83-95(1989). |
| PubMed ID | 2806912 |
| 4 |
Authors | Henrissat B. |
| Title | A classification of glycosyl hydrolases based on amino acid sequence similarities. |
| Source | Biochem. J. 280:309-316(1991). |
| PubMed ID | 1747104 |
| 5 |
Authors | Ko E.P., Akatsuka H., Moriyama H., Shinmyo A., Hata Y., Katsube Y., Urabe I., Okada H. |
| Title | Site-directed mutagenesis at aspartate and glutamate residues of xylanase from Bacillus pumilus. |
| Source | Biochem. J. 288:117-121(1992). |
| PubMed ID | 1359880 |
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