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PROSITE documentation PDOC00743

Ribosomal protein S28e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian S28 [1].
  • Plant S28 [2].
  • Fungi S33 [3].
  • Archaebacterial S28e.

These proteins have from 64 to 78 amino acids. As a signature pattern we selected a highly conserved nonapeptide from the C-terminal extremity of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S28E, PS00961; Ribosomal protein S28e signature  (PATTERN)
Consensus pattern: E-[ST]-[EA]-R-E-A-[RK]-x-[LI]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00961
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00961
• Scan Swiss-Prot/TrEMBL entries against PS00961
• view ligand binding statistics
Matching PDB structures: 1NY4 [ALL]

References:

1 AuthorsChan Y.-L., Olvera J., Wool I.G.
TitleThe primary structure of rat ribosomal protein S28.
SourceBiochem. Biophys. Res. Commun. 179:314-318(1991).
PubMed ID1679328
2 AuthorsHwang I., Goodman H.M.
TitleCloning of an Arabidopsis ribosomal protein S28 cDNA.
SourcePlant Physiol. 102:1357-1358(1993).
PubMed ID8278557
DOI102/4/1357
3 AuthorsHoekstra R., Ferreira P.M., Bootsman T.C., Mager W.H., Planta R.J.
TitleStructure and expression of the ABF1-regulated ribosomal protein S33 gene in Kluyveromyces.
SourceYeast 8:949-959(1992).
PubMed ID1481571

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