Entry: PS00961

General information about the entry
Entry name RIBOSOMAL_S28E
Accession number PS00961
Entry type PATTERN
Date JUN-1994 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00743
Name and characterization of the entry
DescriptionRibosomal protein S28e signature.
Pattern E-[ST]-[EA]-R-E-A-[RK]-x-[LI].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 53 hits in 53 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 51 hits in 51 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 96.23 %
  • Recall (true hits / (true hits + false negatives)): 82.26 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RS281_ARATH (Q9SR73), RS282_ARATH (P34789), RS28A_YEAST (Q3E7X9), 
RS28B_YEAST (P0C0X0), RS28_AERPE  (Q9Y9A6), RS28_ARCFU  (O29493), 
RS28_ASHGO  (Q74ZD8), RS28_BOMMO  (Q6PS50), RS28_BOVIN  (Q56JX6), 
RS28_CAEEL  (Q95Y04), RS28_CANGA  (Q6FLC3), RS28_DANRE  (Q6PBK3), 
RS28_DICDI  (Q54MZ5), RS28_DROME  (Q9W334), RS28_HUMAN  (P62857), 
RS28_HYPBU  (A2BK95), RS28_ICTPU  (Q90YP3), RS28_KLULA  (P33285), 
RS28_KLUMA  (P33286), RS28_MAIZE  (P46302), RS28_META3  (A6UT50), 
RS28_METJA  (P54065), RS28_METKA  (Q8TVE7), RS28_METM5  (A4FYI6), 
RS28_METM6  (A9A7E6), RS28_METM7  (A6VJU6), RS28_METMP  (Q6LZI8), 
RS28_METS5  (A4YCQ2), RS28_METVS  (A6USH4), RS28_MOUSE  (P62858), 
RS28_NEUCR  (Q7S6W5), RS28_PAPDA  (Q6EV21), RS28_PICTO  (Q6KZI6), 
RS28_PIG    (Q6QAT1), RS28_PYRAB  (P61029), RS28_PYRAE  (Q8ZTA7), 
RS28_PYRAR  (A4WLP1), RS28_PYRFU  (Q8U159), RS28_PYRHO  (P61030), 
RS28_PYRIL  (A1RS33), RS28_PYRKO  (Q5JGR4), RS28_PYRNV  (B1Y9V2), 
RS28_RAT    (P62859), RS28_SCHPO  (Q10421), RS28_SPOFR  (Q962Q2), 
RS28_SULAC  (Q4JAV1), RS28_SULSO  (Q980Q5), RS28_SULTO  (Q975Z8), 
RS28_THEAC  (P57711), RS28_THEPD  (A1RXH2), RS28_THEVO  (Q97BK7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RS28_HALLT  (B9LPY3), RS28_HALS3  (B0R500), RS28_HALSA  (P57710), 
RS28_HALWD  (Q18GA9), RS28_KORCO  (B1L5N5), RS28_METAC  (Q8TQL8), 
RS28_METMA  (Q8PU75), RS28_METTH  (O26356), RS28_NANEQ  (P61031), 
RS28_NATPD  (Q3IPM8), RS28_OSTOS  (O61590)
False positive hits (sequences which do not belong to the set under consideration):
IF2_CYTH3   (Q11PK5), SYI_LACLA   (Q9CEH8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1NY4; 3J20; 3U5C; 3U5G;

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