Entry: PS00961

General information about the entry

Entry name [info] RIBOSOMAL_S28E
Accession [info] PS00961
Entry type [info] PATTERN
Date [info] JUN-1994 (CREATED); DEC-2004 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00743

Name and characterization of the entry

Description [info] Ribosomal protein S28e signature.
Pattern [info]
E-[ST]-[EA]-R-E-A-[RK]-x-[LI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 55 in 55 different sequences
Number of true positive hits 52 in 52 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.55 %
Recall (true positives / (true positives + false negatives)) 82.54 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
52 sequences

RS281_ARATH (Q9SR73    ), RS282_ARATH (P34789    ), RS28A_SCHPO (P0CT79    ), 
RS28A_YEAST (Q3E7X9    ), RS28B_SCHPO (P0CT80    ), RS28B_YEAST (P0C0X0    ), 
RS28_AERPE  (Q9Y9A6    ), RS28_ARCFU  (O29493    ), RS28_ASHGO  (Q74ZD8    ), 
RS28_BOMMO  (Q6PS50    ), RS28_BOVIN  (Q56JX6    ), RS28_CAEEL  (Q95Y04    ), 
RS28_CANGA  (Q6FLC3    ), RS28_DANRE  (Q6PBK3    ), RS28_DICDI  (Q54MZ5    ), 
RS28_DROME  (Q9W334    ), RS28_HUMAN  (P62857    ), RS28_HYPBU  (A2BK95    ), 
RS28_ICTPU  (Q90YP3    ), RS28_KLULA  (P33285    ), RS28_KLUMA  (P33286    ), 
RS28_MAIZE  (P46302    ), RS28_META3  (A6UT50    ), RS28_METJA  (P54065    ), 
RS28_METKA  (Q8TVE7    ), RS28_METM5  (A4FYI6    ), RS28_METM6  (A9A7E6    ), 
RS28_METM7  (A6VJU6    ), RS28_METMP  (Q6LZI8    ), RS28_METS5  (A4YCQ2    ), 
RS28_METVS  (A6USH4    ), RS28_MOUSE  (P62858    ), RS28_NEUCR  (Q7S6W5    ), 
RS28_PAPDA  (Q6EV21    ), RS28_PICTO  (Q6KZI6    ), RS28_PIG    (Q6QAT1    ), 
RS28_PYRAB  (P61029    ), RS28_PYRAE  (Q8ZTA7    ), RS28_PYRAR  (A4WLP1    ), 
RS28_PYRFU  (Q8U159    ), RS28_PYRHO  (P61030    ), RS28_PYRIL  (A1RS33    ), 
RS28_PYRNV  (B1Y9V2    ), RS28_RAT    (P62859    ), RS28_SPOFR  (Q962Q2    ), 
RS28_SULAC  (Q4JAV1    ), RS28_SULSO  (Q980Q5    ), RS28_SULTO  (Q975Z8    ), 
RS28_THEAC  (P57711    ), RS28_THEKO  (Q5JGR4    ), RS28_THEPD  (A1RXH2    ), 
RS28_THEVO  (Q97BK7    )
» more

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

RS28_HALLT  (B9LPY3    ), RS28_HALS3  (B0R500    ), RS28_HALSA  (P57710    ), 
RS28_HALWD  (Q18GA9    ), RS28_KORCO  (B1L5N5    ), RS28_METAC  (Q8TQL8    ), 
RS28_METMA  (Q8PU75    ), RS28_METTH  (O26356    ), RS28_NANEQ  (P61031    ), 
RS28_NATPD  (Q3IPM8    ), RS28_OSTOS  (O61590    )
» more

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

IF2_CYTH3   (Q11PK5    ), SYI_LACLA   (Q9CEH8    ), TREH_MYCTU  (P71741    )

		
PDB
[Detailed view]
6 PDB

1NY4; 3J80; 3J81; 3JAM; 5A2Q; 5IT9

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