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| PROSITE documentation PDOC00794 |
Glycosyl hydrolases family 16 signature
Description:
It has been shown [1] that the following glycosyl hydrolases can be classified
into a single family on the basis of sequence similarities:
- Bacterial β-1,3-1,4-glucanases, or lichenases, (EC 3.2.1.73) mainly from
Bacillus but also from Clostridium thermocellum (gene licB), Fibrobacter
succinogenes and Rhodothermus marinus (gene bglA).
- Bacillus circulans β-1,3-glucanase A1 (EC 3.2.1.39) (gene glcA).
- Streptomyces coelicolor agarase (EC 3.2.1.81) (gene dagA).
- Alteromonas carrageenovora kappa-carrageenase (EC 3.2.1.83) (gene cgkA).
- Rhizobium meliloti endo-1,3-1,4-β-glycanase exoK.
Two closely clustered conserved glutamates have been shown [2] to be involved
in the catalytic activity of Bacillus licheniformis lichenase. We used the
region that contains these residues as a signature pattern.
Expert(s) to contact by email:
Henrissat B.
Last update:
May 2004 / Text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| GLYCOSYL_HYDROL_F16, PS01034; Glycosyl hydrolases family 16 active sites (PATTERN) |
| Consensus pattern: |
E-[LIV]-D-[LIVF]-x(0,1)-E-x(2)-[GQ]-[KRNF]-x-[PSTA]
The 2 E's are active site residues |
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
4. |
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| Matching PDB structures:
1AJK 1AJO 1AXK 1BYH ... [ALL] |
References:
| 1 |
Authors | Henrissat B. |
| Title | A classification of glycosyl hydrolases based on amino acid sequence similarities. |
| Source | Biochem. J. 280:309-316(1991). |
| PubMed ID | 1747104 |
| 2 |
Authors | Juncosa M., Pons J., Dot T., Querol E., Planas A. |
| Title | Identification of active site carboxylic residues in Bacillus licheniformis 1,3-1,4-beta-D-glucan 4-glucanohydrolase by site-directed mutagenesis. |
| Source | J. Biol. Chem. 269:14530-14535(1994). |
| PubMed ID | 8182059 |
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