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PROSITE documentation PDOC00848

Ribosomal protein L13e signature

Description:

A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities [1]. One of these families consists of:

  • Vertebrate L13 (was previously known as Breast Basic Conserved protein 1 (BBC1)).
  • Drosophila L13.
  • Plant L13.
  • Yeast L13 (RPL13A and RPL13B).
  • Aeropyrum pernix and Sulfolobus L13e.

These proteins have 77 to 218 amino-acid residues. As a signature pattern, we selected a stretch of about 16 residues in the first third of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L13E, PS01104; Ribosomal protein L13e signature  (PATTERN)
Consensus pattern: [KR]-x-G-[KR]-G-F-[ST]-[LVF]-x-E-[LVI]-x(3)-G
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01104
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01104
• Scan Swiss-Prot/TrEMBL entries against PS01104
• view ligand binding statistics
Matching PDB structures: 4A18 4A19 4A1B 4A1D [ALL]

Reference:

1 AuthorsOlvera J., Wool I.G.
TitleThe primary structure of rat ribosomal protein L13.
SourceBiochem. Biophys. Res. Commun. 201:102-107(1994).
PubMed ID8198561

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