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PROSITE documentation PDOC00882

Ribosomal protein L34e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian L34.
  • Mosquito L31 [1].
  • Plant L34 [2].
  • Yeast putative ribosomal protein YIL052c.
  • Archaebacterial L34e.

These proteins have 89 to 129 amino-acid residues. As a signature pattern, we selected a conserved region located in the N-terminal section of these proteins.

Last update:

December 2001 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L34E, PS01145; Ribosomal protein L34e signature  (PATTERN)
Consensus pattern: [ST]-x-S-x-[KRQ]-x(4)-[KR]-[TL]-P-[GS]-[GN]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01145
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01145
• Scan Swiss-Prot/TrEMBL entries against PS01145
• view ligand binding statistics
Matching PDB structures: 3IZS 4A18 4A19 4A1B ... [ALL]

References:

1 AuthorsLan Q., Niu L.L., Fallon A.M.
TitleMosquito ribosomal protein rpL31 resembles rat rpL34: cDNA and deduced amino acid sequence.
SourceBiochim. Biophys. Acta 1218:460-462(1994).
PubMed ID8049275
2 AuthorsGao J., Kim S.R., Chung Y.Y., Lee J.M., An G.
TitleDevelopmental and environmental regulation of two ribosomal protein genes in tobacco.
SourcePlant Mol. Biol. 25:761-770(1994).
PubMed ID8075394

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