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PROSITE documentation PDOC00897

Ribosomal protein L17 signature

Description:

Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. L17 belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups:

  • Eubacterial L17.
  • Yeast mitochondrial YmL8 (gene MRPL8).

Eubacterial L17 is a protein of 120 to 130 amino-acid residues. Yeast YmL8 is twice larger (238 residues), the sequence of its N-terminal half is colinear with that of eubacterial L17. As a signature pattern, we selected a conserved region in the N-terminal section.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L17, PS01167; Ribosomal protein L17 signature  (PATTERN)
Consensus pattern: [IL]-x-[STV]-[GT]-x(2)-[KR]-x-[KRAF]-x(6)-[DE]-x-[LIMV]-[LIVMT]-[TE]-x-[STAG]-[KR]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01167
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01167
• Scan Swiss-Prot/TrEMBL entries against PS01167
• view ligand binding statistics
Matching PDB structures: 1NKW 1NWX 1NWY 1P85 ... [ALL]

Reference:

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