Home ScanProsite ProRule Documents Downloads Links Funding
PROSITE documentation PDOC00919

Ribosomal protein L15e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities [1]. One of these families consists of:

  • Mammalian L15.
  • Insect L15.
  • Plant L15.
  • Yeast YL10 (L13) (Rp15r).
  • Archaebacterial L15e.

These proteins have about 200 amino acid residues. As a signature pattern, we selected a conserved region located in the central section.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L15E, PS01194; Ribosomal protein L15e signature  (PATTERN)
Consensus pattern: [DENT]-[KR]-[AL]-R-x-[LIQ]-G-[FY]-x-[SAP]-x(2)-G-[LIVMFY]-[LIVMFYKS]-[LIVMFY]-[LIVMFYA]-R-x-[RNAS]-[IVL]-x-[KRC]-G
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01194
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01194
• Scan Swiss-Prot/TrEMBL entries against PS01194
• view ligand binding statistics
Matching PDB structures: 1FFK 1JJ2 1K5Y 1K73 ... [ALL]

Reference:

1 AuthorsZwickl P., Lupas A., Baumeister W.
TitleThe Thermoplasma acidophilum rpl15 gene encodes a homologue of eukaryotic ribosomal proteins L15/YL10.
SourceBiochem. Biophys. Res. Commun. 209:684-688(1995).
PubMed ID7733938

Copyright:

PROSITE is copyright. It is produced by the Swiss Institute of Bioinformatics (SIB). There are no restrictions on its use by non-profit institutions as long as its content is in no way modified. Usage by and for commercial entities requires a license agreement. For information about the licensing scheme send an email to license@isb-sib.ch or see: http://www.expasy.org/prosite/prosite_license.htm.

Miscellaneous:

View entry in original PROSITE document format
View entry in raw text format (no links)