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PROSITE documentation PDOC00968

Ribosomal protein L10e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Vertebrate L10 (QM) [1].
  • Plant L10.
  • Caenorhabditis elegans L10 (F10B5.1).
  • Yeast L10 (QSR1).
  • Archaebacterial L10e.

These proteins have 174 to 232 amino-acid residues. As a signature pattern, we selected a conserved region located in the central section.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L10E, PS01257; Ribosomal protein L10e signature  (PATTERN)
Consensus pattern: A-D-R-x(3)-[GR]-[MH]-R-x-[SAP]-[FYW]-G-[KRVTS]-[PANI]-x-[GS]-x(1,2)-A-[KRLV]-[LIVQ]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01257
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01257
• Scan Swiss-Prot/TrEMBL entries against PS01257
• view ligand binding statistics
Matching PDB structures: 1K5Y 1S1I 3IZS [ALL]

Reference:

1 AuthorsChan Y.-L., Diaz J.-J., Denoroy L., Madjar J.J., Wool I.G.
TitleThe primary structure of rat ribosomal protein L10: relationship to a Jun-binding protein and to a putative Wilms' tumor suppressor.
SourceBiochem. Biophys. Res. Commun. 225:952-956(1996).
PubMed ID8780716

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