Entry: PS01257

General information about the entry
Entry name RIBOSOMAL_L10E
Accession number PS01257
Entry type PATTERN
Date NOV-1997 (CREATED); APR-2006 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00968
Name and characterization of the entry
DescriptionRibosomal protein L10e signature.
Pattern A-D-R-x(3)-[GR]-[MH]-R-x-[SAP]-[FYW]-G-[KRVTS]-[PANI]-x-[GS]-x(1,2)-A- [KRLV]-[LIVQ].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 91 hits in 91 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 91 hits in 91 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 97.85 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RL101_ARATH (Q93VT9), RL101_ORYSI (A2ZCQ7), RL101_ORYSJ (Q0ITS8), 
RL102_ARATH (Q08770), RL102_ORYSI (A2Y0T4), RL102_ORYSJ (Q0DKF0), 
RL103_ARATH (Q93W22), RL10A_SCHPO (Q09127), RL10B_SCHPO (Q9P769), 
RL10L_BOVIN (Q2TBW8), RL10L_HUMAN (Q96L21), RL10L_MACFA (Q4R4D3), 
RL10L_MOUSE (P86048), RL10_AERPE  (Q9YEY5), RL10_ARCFU  (O28930), 
RL10_BOMMA  (O96647), RL10_BOVIN  (Q9XSI3), RL10_CAEEL  (Q09533), 
RL10_CHICK  (Q08200), RL10_DICDI  (Q54J69), RL10_DROME  (O61231), 
RL10_ENCCU  (Q8SR96), RL10_EUGGR  (Q39724), RL10_EUPES  (Q9M5M7), 
RL10_HALLT  (B9LQR1), RL10_HALMA  (P60617), RL10_HALS3  (B0R2M5), 
RL10_HALSA  (Q9HSS4), RL10_HALWD  (Q18KD2), RL10_HUMAN  (P27635), 
RL10_HYPBU  (A2BNA6), RL10_MACFA  (Q4R7Y2), RL10_MAIZE  (P45633), 
RL10_META3  (A6USY4), RL10_METAC  (Q8TU90), RL10_METBF  (Q46CR0), 
RL10_METBU  (Q12W43), RL10_METJA  (Q57963), RL10_METKA  (Q8TYP2), 
RL10_METLZ  (A2SQE9), RL10_METM5  (A4FWP5), RL10_METM6  (A9AA25), 
RL10_METM7  (A6VGM6), RL10_METMA  (Q8PWV0), RL10_METMJ  (A3CTT1), 
RL10_METMP  (Q6LXR0), RL10_METPE  (B8GH15), RL10_METS5  (A4YHV3), 
RL10_METST  (Q2NHZ0), RL10_METTH  (O27191), RL10_MOUSE  (Q6ZWV3), 
RL10_NANEQ  (Q74M84), RL10_NATPD  (Q3IU82), RL10_PAPAN  (A9CB60), 
RL10_PICTO  (Q6L152), RL10_PIG    (Q29195), RL10_PINTA  (O22431), 
RL10_PONAB  (Q5R931), RL10_PYRAB  (Q9UYU9), RL10_PYRAE  (Q8ZSV4), 
RL10_PYRAR  (A4WN05), RL10_PYRCJ  (A3MXP3), RL10_PYRFU  (Q9UWP5), 
RL10_PYRHO  (O58367), RL10_PYRIL  (A1RT11), RL10_PYRKO  (Q5JDI6), 
RL10_PYRNV  (B1YDH6), RL10_RAT    (Q6PDV7), RL10_SHEEP  (A8D8X1), 
RL10_SOLME  (P93847), RL10_STAMF  (A3DM76), RL10_SULAC  (Q4JC84), 
RL10_SULIA  (C3MZG3), RL10_SULIK  (C4KIP3), RL10_SULIL  (C3MRC8), 
RL10_SULIM  (C3MXL7), RL10_SULIN  (C3NFZ1), RL10_SULIY  (C3N7I5), 
RL10_SULSO  (Q980J7), RL10_SULTO  (Q96YA4), RL10_TETTS  (Q235M8), 
RL10_THEAC  (Q9HJB3), RL10_THEGJ  (C5A293), RL10_THEON  (B6YSL0), 
RL10_THEPD  (A1RXM2), RL10_THESM  (C6A4T2), RL10_THEVO  (P58299), 
RL10_TOBAC  (Q40592), RL10_UNCMA  (Q0W389), RL10_VITRI  (Q9SPB3), 
RL10_YEAST  (P41805)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RL10_CALMQ  (A8MDE4), RL10_METHJ  (Q2FLD3)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1K5Y; 1S1I; 3IZS; 3J21;

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