PROSITE documentation PDOC51318

Twin arginine translocation (Tat) signal profile




Description

The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes [1]. Homologs of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria [2]. In bacteria, the Tat pathway catalyzes the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state [3].

It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multiatom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulfoxide (DMSO) reductases [4,5]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases [6].

In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength [7].

The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [4,5].

The profile we developed recognizes the whole prokaryotic and archeal Tat signal from the methionine to the A-x-A short motif.

Last update:

May 2007 / First entry.

Technical section

PROSITE method (with tools and information) covered by this documentation:

TAT, PS51318; Twin arginine translocation (Tat) signal profile  (MATRIX)


References

1AuthorsWickner W., Schekman R.
TitleProtein translocation across biological membranes.
SourceScience 310:1452-1456(2005).
PubMed ID16322447
DOI10.1126/science.1113752

2AuthorsYen M.R., Tseng Y.H., Nguyen E.H., Wu L.F., Saier M.H. Jr.
TitleSequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system.
SourceArch. Microbiol. 177:441-450(2002).
PubMed ID12029389
DOI10.1007/s00203-002-0408-4

3AuthorsStephenson K.
TitleSec-dependent protein translocation across biological membranes: evolutionary conservation of an essential protein transport pathway (review).
SourceMol. Membr. Biol. 22:17-28(2005).
PubMed ID16092521

4AuthorsLee P.A., Tullman-Ercek D., Georgiou G.
TitleThe bacterial twin-arginine translocation pathway.
SourceAnnu. Rev. Microbiol. 60:373-395(2006).
PubMed ID16756481
DOI10.1146/annurev.micro.60.080805.142212

5AuthorsRobinson C., Bolhuis A.
TitleTat-dependent protein targeting in prokaryotes and chloroplasts.
SourceBiochim. Biophys. Acta 1694:135-147(2004).
PubMed ID15546663
DOI10.1016/j.bbamcr.2004.03.010

6AuthorsBerks B.C., Palmer T., Sargent F.
TitleProtein targeting by the bacterial twin-arginine translocation (Tat) pathway.
SourceCurr. Opin. Microbiol. 8:174-181(2005).
PubMed ID15802249
DOI10.1016/j.mib.2005.02.010

7AuthorsBolhuis A.
TitleProtein transport in the halophilic archaeon Halobacterium sp. NRC-1: a major role for the twin-arginine translocation pathway?
SourceMicrobiology 148:3335-3346(2002).
PubMed ID12427925



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