Entry: PS00041

General information about the entry

Entry name [info] HTH_ARAC_FAMILY_1
Accession [info] PS00041
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00040

Name and characterization of the entry

Description [info] Bacterial regulatory proteins, araC family signature.
Pattern [info]
[KRQ]-[LIVMA]-x(2)-[GSTALIV]-{FYWPGDN}-x(2)-[LIVMSA]-x(4,9)-[LIVMF]-x-
{PLH}-[LIVMSTA]-[GSTACIL]-{GPK}-{F}-x-[GANQRF]-[LIVMFY]-x(4,5)-[LFY]-
x(3)-[FYIVA]-{FYWHCM}-{PGVI}-x(2)-[GSADENQKR]-x-[NSTAPKL]-[PARL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 315 in 313 different sequences
Number of true positive hits 214 in 212 different sequences
Number of 'unknown' hits 0
Number of false positive hits 101 in 101 different sequences
Number of false negative sequences 45
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 67.94 %
Recall (true positives / (true positives + false negatives)) 82.63 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
212 sequences

AARP_PROST  (P43463    ), ADAA_BACSU  (P19219    ), ADA_ECOLI   (P06134    ), 
ADA_SALTY   (P26189    ), ADIY_ECOLI  (P33234    ), AGGR_ECOLX  (P43464    ), 
ALKA_MYCTO  (P9WJW2    ), ALKA_MYCTU  (P9WJW3    ), ALKR_ACIAD  (O31249    ), 
ANDR_BURCE  (Q84BZ4    ), APPY_ECOLI  (P05052    ), ARACL_STRAT (Q03320    ), 
ARACL_STRLI (P35319    ), ARAC_CITFR  (P11765    ), ARAC_DICCH  (P07642    ), 
ARAC_ECO57  (P0A9E1    ), ARAC_ECOLI  (P0A9E0    ), ARAC_SALTY  (P03022    ), 
ARGR_PSEAE  (G3XCU2    ), BTR_BACSU   (P40408    ), CAF1R_YERPE (P26950    ), 
CDHR_PSEAE  (Q9HTH5    ), CFAD_ECOLX  (P25393    ), CHBR_ECOLI  (P17410    ), 
CSVR_ECOLX  (P43460    ), ENVY_ECOLI  (P10805    ), EUTR_ECOLI  (P36547    ), 
EUTR_SALTY  (Q9ZFU7    ), EXSA_PSEAE  (P26993    ), FAPR_ECOLX  (P23774    ), 
GADW_ECO57  (P63202    ), GADW_ECOL6  (Q8FCI7    ), GADW_ECOLI  (P63201    ), 
GADW_SHIFL  (P63203    ), GADX_ECO27  (Q9EYV5    ), GADX_ECO57  (P58230    ), 
GADX_ECOL6  (Q8FCI6    ), GADX_ECOLI  (P37639    ), GADX_SHIFL  (Q83PR0    ), 
GLXA_RHIME  (O87389    ), HILD_SALTS  (E1WAC0    ), HILD_SALTY  (P0CL08    ), 
HRPB_RALSO  (P31778    ), INVF_SALTI  (P69342    ), INVF_SALTY  (P69343    ), 
LACR_STAXY  (O33813    ), LCRF_YERPE  (P28808    ), LUMQ_PHOLE  (Q51872    ), 
MARA_ECO57  (P0ACH6    ), MARA_ECOLI  (P0ACH5    ), MARA_SALEN  (P0A2S6    ), 
MARA_SALTI  (P0A2S5    ), MARA_SALTY  (P0A2S4    ), MARA_SHIFL  (P0ACH7    ), 
MELR_ECOL6  (P0ACH9    ), MELR_ECOLI  (P0ACH8    ), MMSR_PSEAE  (P28809    ), 
MSMR_STRMU  (Q00753    ), MXIE_SHIFL  (P0A2S7    ), MXIE_SHISO  (P0A2S8    ), 
NIMR_ECOLI  (P76241    ), NPHR_RHOSO  (B1Q2A8    ), PCHR_PSEAE  (P40883    ), 
PERA_ECO27  (P43459    ), POCR_SALTY  (Q05587    ), PQRA_PROVU  (Q52620    ), 
RAFR_PEDPE  (P43465    ), RAMA_KLEPN  (Q48413    ), RHAR_CROS8  (A7ML57    ), 
RHAR_ECO24  (A7ZUB8    ), RHAR_ECO57  (Q8X7B3    ), RHAR_ECOBW  (C5A074    ), 
RHAR_ECOHS  (A8A710    ), RHAR_ECOK1  (A1AI83    ), RHAR_ECOL5  (Q0TAF7    ), 
RHAR_ECOL6  (Q8FBD7    ), RHAR_ECOLI  (P09378    ), RHAR_ECOUT  (Q1R413    ), 
RHAR_ENT38  (A4WG90    ), RHAR_KLEP7  (A6TGB0    ), RHAR_MANSM  (Q65Q30    ), 
RHAR_SALA4  (B5F0N0    ), RHAR_SALAR  (A9MI63    ), RHAR_SALCH  (Q57HG7    ), 
RHAR_SALDC  (B5FPP6    ), RHAR_SALEP  (B5QWY5    ), RHAR_SALHS  (B4TBY4    ), 
RHAR_SALNS  (B4SZZ4    ), RHAR_SALPA  (Q5PKG1    ), RHAR_SALPB  (A9MZC9    ), 
RHAR_SALPK  (B5BJG9    ), RHAR_SALSV  (B4TPR0    ), RHAR_SALTI  (Q8Z2V5    ), 
RHAR_SALTY  (P40865    ), RHAR_SHIBS  (Q31U83    ), RHAR_SHIDS  (Q32A71    ), 
RHAR_SHIF8  (Q0SZ96    ), RHAR_SHIFL  (Q83PD9    ), RHAR_YERP3  (A7FN79    ), 
RHAR_YERPA  (Q1C0W2    ), RHAR_YERPB  (B2K1W6    ), RHAR_YERPE  (Q8ZIZ9    ), 
RHAR_YERPG  (A9QYR6    ), RHAR_YERPN  (Q1CEB6    ), RHAR_YERPP  (A4TRS7    ), 
RHAR_YERPS  (Q66FF1    ), RHAR_YERPY  (B1JNC4    ), RHAS_CITK8  (A8AL27    ), 
RHAS_ECO24  (A7ZUB7    ), RHAS_ECO27  (B7UNM6    ), RHAS_ECO45  (B7MI37    ), 
RHAS_ECO55  (B7L9G1    ), RHAS_ECO57  (Q8X897    ), RHAS_ECO5E  (B5YZ43    ), 
RHAS_ECO7I  (B7NUA1    ), RHAS_ECO81  (B7N2P7    ), RHAS_ECO8A  (B7M6V7    ), 
RHAS_ECOBW  (C5A073    ), RHAS_ECODH  (B1XB72    ), RHAS_ECOHS  (A8A709    ), 
RHAS_ECOK1  (A1AI82    ), RHAS_ECOL5  (Q0TAF8    ), RHAS_ECOL6  (Q8CXW5    ), 
RHAS_ECOLC  (B1IVH3    ), RHAS_ECOLI  (P09377    ), RHAS_ECOLU  (B7NFK3    ), 
RHAS_ECOSE  (B6I4P8    ), RHAS_ECOSM  (B1LMU6    ), RHAS_ECOUT  (Q1R414    ), 
RHAS_ENT38  (A4WG91    ), RHAS_KLEP3  (B5XZ49    ), RHAS_KLEP7  (A6TGA9    ), 
RHAS_PECAS  (Q6DA22    ), RHAS_PECCP  (C6DJR4    ), RHAS_SALA4  (B5F0M9    ), 
RHAS_SALAR  (A9MI64    ), RHAS_SALCH  (Q57HG8    ), RHAS_SALDC  (B5FPP5    ), 
RHAS_SALEP  (B5QWY4    ), RHAS_SALG2  (B5RFC3    ), RHAS_SALHS  (B4TBY3    ), 
RHAS_SALNS  (B4SZZ3    ), RHAS_SALPA  (Q5PKG2    ), RHAS_SALPB  (A9MZC8    ), 
RHAS_SALPC  (C0Q3L4    ), RHAS_SALPK  (B5BJG8    ), RHAS_SALSV  (B4TPQ9    ), 
RHAS_SALTI  (P0A2T0    ), RHAS_SALTY  (P0A2S9    ), RHAS_SHIBS  (Q31U84    ), 
RHAS_SHIDS  (Q32A70    ), RHAS_SHIF8  (Q0SZ95    ), RHAS_SHIFL  (Q83PE0    ), 
RHAS_SHISS  (Q3YV71    ), RHAS_YERP3  (A7FN80    ), RHAS_YERPB  (B2K1W5    ), 
RHAS_YERPG  (A9QYR8    ), RHAS_YERPP  (A4TRS8    ), RHAS_YERPS  (Q66FF2    ), 
RHAS_YERPY  (B1JNC5    ), RIPA_CORDI  (Q6NI56    ), RIPA_COREF  (Q8FQS2    ), 
RIPA_CORGL  (Q8NRR3    ), RNS_ECOLX   (P16114    ), ROB_ECO57   (P0ACI1    ), 
ROB_ECOLI   (P0ACI0    ), ROB_SHIFL   (P0ACI2    ), SIRC_SALTI  (Q8Z4A6    ), 
SIRC_SALTS  (E1WAB2    ), SIRC_SALTY  (P0CL09    ), SOXS_ECO57  (P0A9E4    ), 
SOXS_ECOL6  (P0A9E3    ), SOXS_ECOLI  (P0A9E2    ), SOXS_SALTY  (Q56143    ), 
TCPN_VIBC3  (A5F384    ), TCPN_VIBCH  (P0C6D6    ), TETD_ECOLX  (P28816    ), 
THCR_RHOER  (P43462    ), URER_ECOLX  (P32326    ), URER_PROMH  (Q02458    ), 
VIRF_SHIDY  (P0A2T2    ), VIRF_SHIFL  (P0A2T1    ), VIRF_SHISO  (P0A2T3    ), 
VIRF_YERE8  (A1JU91    ), VIRF_YEREN  (P0C2V5    ), XYLR_ECO57  (P0ACI5    ), 
XYLR_ECOL6  (P0ACI4    ), XYLR_ECOLI  (P0ACI3    ), XYLR_HAEIN  (P45043    ), 
XYLS1_PSEPU (Q04710    ), XYLS2_PSEPU (Q05092    ), XYLS3_PSEPU (Q05335    ), 
XYLS4_PSEPU (Q04713    ), XYLS_PSEPU  (P07859    ), Y1052_HAEIN (P45008    ), 
Y4FK_SINFN  (P55449    ), YCGK_PSEVC  (P43461    ), YDCO_ECOLI  (P76103    ), 
YDEC_BACSU  (P96660    ), YDEE_BACSU  (P96662    ), YDEO_ECO57  (Q8X4Z9    ), 
YDEO_ECOL6  (Q8FHG0    ), YDEO_ECOLI  (P76135    ), YDEO_SHIFL  (Q83RF4    ), 
YESS_BACSU  (O31522    ), YFIF_BACSU  (P54722    ), YIDL_ECOLI  (P31449    ), 
YIJO_ECOLI  (P32677    ), YISR_BACSU  (P40331    ), YMCR_STRLA  (P43458    ), 
YOBQ_BACSU  (O34901    ), YPDC_ECOLI  (P77396    )
» more

UniProtKB/Swiss-Prot
False negative sequences
45 sequences

FEAR_ECOLI  (Q47129    ), ORUR_PSEAE  (P72171    ), RAMA_ENTCL  (P55922    ), 
RCLR_ECOLI  (P77379    ), RHAR_PECAS  (Q6DA21    ), RHAR_PECCP  (C6DJR5    ), 
RHAS_ESCF3  (B7LVD8    ), RHAS_MANSM  (Q65Q31    ), RHAS_SHIB3  (B2TVP7    ), 
RHAS_YERPA  (Q1C0W1    ), RHAS_YERPE  (Q8ZJ00    ), RHAS_YERPN  (Q1CEB5    ), 
RHRA_RHIME  (Q9Z3Q6    ), VIRS_MYCTO  (P9WMJ2    ), VIRS_MYCTU  (P9WMJ3    ), 
VQSM_PSEAE  (Q9I1P2    ), Y077_STAAW  (Q8NYT6    ), Y078_STAAS  (Q6GD21    ), 
Y084_STAAC  (Q5HJR8    ), Y097_STAAN  (Q7A882    ), Y101_STAAM  (Q99XB1    ), 
Y107_STAAR  (Q6GKK1    ), Y1395_MYCTO (P9WMJ0    ), Y1395_MYCTU (P9WMJ1    ), 
Y1430_MYCBO (P68912    ), Y161_STAAB  (Q2YV56    ), Y165_STAES  (Q8CQE3    ), 
Y184_STAA8  (Q2G1E1    ), Y198_STAAS  (Q6GCQ3    ), Y198_STAAW  (Q8NYJ9    ), 
Y201_STAAC  (Q5HJF7    ), Y214_STAAR  (Q6GK93    ), Y215_STAAN  (Q7A7X9    ), 
Y217_STAA3  (Q2FK47    ), Y223_STAAM  (Q99X00    ), Y2406_STAEQ (Q5HKE0    ), 
YBCM_ECOLI  (P77634    ), YBFI_BACSU  (O31449    ), YBFP_BACSU  (O31456    ), 
YDIP_ECOLI  (P77402    ), YHTH1_STAAU (Q936F1    ), YKGA_ECOLI  (P77601    ), 
YNEL_ECOLI  (P76138    ), YQHC_ECOLI  (Q46855    ), YTDP_BACSU  (O32071    )
» more

UniProtKB/Swiss-Prot
False positive sequences
101 sequences

AAM_RHOER   (K9NBS6    ), ABGR_ECOLI  (P77744    ), APY4_ARATH  (Q8H1D8    ), 
ARGD_HAEDU  (Q7VMS5    ), AROB_SYNP6  (Q5N3D4    ), ARSB_YEREN  (P74985    ), 
AT21A_ARATH (P0CH01    ), BIOC_DECAR  (Q47C02    ), BPNT1_MOUSE (Q9Z0S1    ), 
BRE1A_ORYSI (A2XW69    ), BRE1A_ORYSJ (Q7XU27    ), CBID_PROM9  (Q31DE8    ), 
CHB_SERMA   (Q54468    ), CORA_YERPE  (Q8ZAG5    ), CORA_YERPS  (Q66FY7    ), 
ENPP1_RAT   (Q924C3    ), ERD6_ARATH  (O04036    ), FABD_HAEIN  (P43712    ), 
FKS3_YEAST  (Q04952    ), FTSW_ACIAD  (Q6FFC1    ), GATB_FRASC  (Q2J6U8    ), 
GATB_THEFY  (Q47SC0    ), GRM6_HUMAN  (O15303    ), GRM6_MOUSE  (Q5NCH9    ), 
GRM6_RABIT  (Q863I4    ), GRM6_RAT    (P35349    ), HLDE_THICR  (Q31IC2    ), 
KDPA_PSEAE  (P57683    ), KDPA_PSEPK  (Q88FD7    ), KDPA_PSESM  (Q883V6    ), 
KUP1_SPHWW  (A5V2F7    ), L2_FOWPN    (P15911    ), LYSO_ECOLI  (P75826    ), 
L_CCHFI     (Q6TQR6    ), MATK_HELAN  (Q1KXX8    ), MEND_BACAH  (A0RK76    ), 
MEND_BACAN  (Q81K94    ), MEND_BACCN  (A7GU91    ), MEND_BACCR  (Q816H7    ), 
MEND_BACCZ  (Q632I2    ), MEND_BACHK  (Q6HC26    ), MEND_BACP2  (A8FGK9    ), 
MEND_BACSU  (P23970    ), MEND_BACVZ  (A7Z812    ), MEND_BACWK  (A9VM77    ), 
MEND_GEOKA  (Q5KVX6    ), MEND_GEOTN  (A4IS14    ), MEND_LISIN  (Q92AY5    ), 
MEND_LISMF  (Q71YZ2    ), MEND_LISMO  (Q8Y6K9    ), MEND_LISW6  (A0AJC9    ), 
METK_SALRD  (Q2RYY4    ), METN_CHLCV  (Q823C4    ), MPRGB_DANRE (Q6DC77    ), 
MURA1_STRP1 (P65458    ), MURA1_STRP3 (P0DC44    ), MURA1_STRP6 (Q5XCX7    ), 
MURA1_STRP8 (P65459    ), MURA1_STRPM (Q48UD0    ), MURA1_STRPQ (P0DC45    ), 
MUTS_AROAE  (Q5NYP9    ), NAR1_LODEL  (A5DSI2    ), NAT12_ARATH (Q3E7D0    ), 
NHAA2_CLAM3 (A5CTB2    ), NR5A2_CHICK (O42101    ), POL2_CNSV   (Q8QVU9    ), 
PRP28_ASPCL (A1CHL3    ), PRP28_ASPFU (Q4WPE9    ), PRP28_ASPNC (A2QIL2    ), 
PRP28_ASPOR (Q2UH00    ), PRP28_ASPTN (Q0CLX0    ), PRP28_BOTFB (A6RJA2    ), 
PRP28_COCIM (Q1DMX8    ), PRP28_EMENI (Q5BCU6    ), PRP28_GIBZE (Q4I7F9    ), 
PRP28_NEOFI (A1CX72    ), PRP28_NEUCR (Q7SEL0    ), PRP28_PHANO (Q0UWC8    ), 
PRP28_SCLS1 (A7EGG4    ), PURA_ACIAD  (Q6FCS7    ), RH1_ARATH   (Q7FGZ2    ), 
RP54_VIBAN  (O08429    ), S2610_HUMAN (Q8NG04    ), S4A10_BOVIN (Q32LP4    ), 
S4A10_HUMAN (Q6U841    ), S4A10_MOUSE (Q5DTL9    ), S4A10_RAT   (Q80ZA5    ), 
SELA_HAEDU  (Q7VKC2    ), SEM4A_HUMAN (Q9H3S1    ), SEM4B_MOUSE (Q62179    ), 
SYFB_XANAC  (Q8PJE5    ), SYG_MYCPA   (Q73Y21    ), SYG_NOCFA   (Q5YZT7    ), 
SYV_SCHPO   (O75005    ), TLR9_BOVIN  (Q5I2M5    ), TLR9_SHEEP  (Q5I2M4    ), 
TM235_HUMAN (A6NFC5    ), UFL1_NEMVE  (A7S2N8    ), YB95_ARATH  (Q8W487    ), 
YKOC_BACSU  (O34572    ), YPD9_CAEEL  (Q11188    )
» more

PDB
[Detailed view]
9 PDB

1BL0; 1D5Y; 1WPK; 1XS9; 1ZGW; 2K9S; 3GBG; 4FE4; 4FE7

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