Entry: PS00041

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General information about the entry

Entry name [info] HTH_ARAC_FAMILY_1
Accession [info] PS00041
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); FEB-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00040

Name and characterization of the entry

Description [info] Bacterial regulatory proteins, araC family signature.
Pattern [info]
[KRQ]-[LIVMA]-x(2)-[GSTALIV]-{FYWPGDN}-x(2)-[LIVMSA]-x(4,9)-[LIVMF]-x-
{PLH}-[LIVMSTA]-[GSTACIL]-{GPK}-{F}-x-[GANQRF]-[LIVMFY]-x(4,5)-[LFY]-
x(3)-[FYIVA]-{FYWHCM}-{PGVI}-x(2)-[GSADENQKR]-x-[NSTAPKL]-[PARL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_03 which contains 542'782 sequence entries.


Total number of hits 313 in 311 different sequences
Number of true positive hits 212 in 210 different sequences
Number of 'unknown' hits
Number of false positive hits 101 in 101 different sequences
Number of false negative sequences 43
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 67.73 %
Recall (true positives / (true positives + false negatives)) 83.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
210 sequences

AARP_PROST  (P43463), ADAA_BACSU  (P19219), ADA_ECOLI   (P06134), 
ADA_SALTY   (P26189), ADIY_ECOLI  (P33234), AGGR_ECOLX  (P43464), 
ALKA_MYCTU  (Q10630), ALKR_ACIAD  (O31249), ANDR_BURCE  (Q84BZ4), 
APPY_ECOLI  (P05052), ARACL_STRAT (Q03320), ARACL_STRLI (P35319), 
ARAC_CITFR  (P11765), ARAC_ECO57  (P0A9E1), ARAC_ECOLI  (P0A9E0), 
ARAC_ERWCH  (P07642), ARAC_SALTY  (P03022), BTR_BACSU   (P40408), 
CAF1R_YERPE (P26950), CDHR_PSEAE  (Q9HTH5), CFAD_ECOLX  (P25393), 
CHBR_ECOLI  (P17410), CSVR_ECOLX  (P43460), ENVY_ECOLI  (P10805), 
EUTR_ECOLI  (P36547), EUTR_SALTY  (Q9ZFU7), EXSA_PSEAE  (P26993), 
FAPR_ECOLX  (P23774), GADW_ECO57  (P63202), GADW_ECOL6  (Q8FCI7), 
GADW_ECOLI  (P63201), GADW_SHIFL  (P63203), GADX_ECO27  (Q9EYV5), 
GADX_ECO57  (P58230), GADX_ECOL6  (Q8FCI6), GADX_ECOLI  (P37639), 
GADX_SHIFL  (Q83PR0), GLXA_RHIME  (O87389), HILD_SALTS  (E1WAC0), 
HILD_SALTY  (P0CL08), HRPB_RALSO  (P31778), INVF_SALTI  (P69342), 
INVF_SALTY  (P69343), LACR_STAXY  (O33813), LCRF_YERPE  (P28808), 
LUMQ_PHOLE  (Q51872), MARA_ECO57  (P0ACH6), MARA_ECOLI  (P0ACH5), 
MARA_SALEN  (P0A2S6), MARA_SALTI  (P0A2S5), MARA_SALTY  (P0A2S4), 
MARA_SHIFL  (P0ACH7), MELR_ECOL6  (P0ACH9), MELR_ECOLI  (P0ACH8), 
MMSR_PSEAE  (P28809), MSMR_STRMU  (Q00753), MXIE_SHIFL  (P0A2S7), 
MXIE_SHISO  (P0A2S8), NPHR_RHOSO  (B1Q2A8), PCHR_PSEAE  (P40883), 
PERA_ECO27  (P43459), POCR_SALTY  (Q05587), PQRA_PROVU  (Q52620), 
RAFR_PEDPE  (P43465), RAMA_KLEPN  (Q48413), RHAR_CROS8  (A7ML57), 
RHAR_ECO24  (A7ZUB8), RHAR_ECO57  (Q8X7B3), RHAR_ECOBW  (C5A074), 
RHAR_ECOHS  (A8A710), RHAR_ECOK1  (A1AI83), RHAR_ECOL5  (Q0TAF7), 
RHAR_ECOL6  (Q8FBD7), RHAR_ECOLI  (P09378), RHAR_ECOUT  (Q1R413), 
RHAR_ENT38  (A4WG90), RHAR_KLEP7  (A6TGB0), RHAR_MANSM  (Q65Q30), 
RHAR_SALA4  (B5F0N0), RHAR_SALAR  (A9MI63), RHAR_SALCH  (Q57HG7), 
RHAR_SALDC  (B5FPP6), RHAR_SALEP  (B5QWY5), RHAR_SALHS  (B4TBY4), 
RHAR_SALNS  (B4SZZ4), RHAR_SALPA  (Q5PKG1), RHAR_SALPB  (A9MZC9), 
RHAR_SALPK  (B5BJG9), RHAR_SALSV  (B4TPR0), RHAR_SALTI  (Q8Z2V5), 
RHAR_SALTY  (P40865), RHAR_SHIBS  (Q31U83), RHAR_SHIDS  (Q32A71), 
RHAR_SHIF8  (Q0SZ96), RHAR_SHIFL  (Q83PD9), RHAR_YERP3  (A7FN79), 
RHAR_YERPA  (Q1C0W2), RHAR_YERPB  (B2K1W6), RHAR_YERPE  (Q8ZIZ9), 
RHAR_YERPG  (A9QYR6), RHAR_YERPN  (Q1CEB6), RHAR_YERPP  (A4TRS7), 
RHAR_YERPS  (Q66FF1), RHAR_YERPY  (B1JNC4), RHAS_CITK8  (A8AL27), 
RHAS_ECO24  (A7ZUB7), RHAS_ECO27  (B7UNM6), RHAS_ECO45  (B7MI37), 
RHAS_ECO55  (B7L9G1), RHAS_ECO57  (Q8X897), RHAS_ECO5E  (B5YZ43), 
RHAS_ECO7I  (B7NUA1), RHAS_ECO81  (B7N2P7), RHAS_ECO8A  (B7M6V7), 
RHAS_ECOBW  (C5A073), RHAS_ECODH  (B1XB72), RHAS_ECOHS  (A8A709), 
RHAS_ECOK1  (A1AI82), RHAS_ECOL5  (Q0TAF8), RHAS_ECOL6  (Q8CXW5), 
RHAS_ECOLC  (B1IVH3), RHAS_ECOLI  (P09377), RHAS_ECOLU  (B7NFK3), 
RHAS_ECOSE  (B6I4P8), RHAS_ECOSM  (B1LMU6), RHAS_ECOUT  (Q1R414), 
RHAS_ENT38  (A4WG91), RHAS_ERWCT  (Q6DA22), RHAS_KLEP3  (B5XZ49), 
RHAS_KLEP7  (A6TGA9), RHAS_PECCP  (C6DJR4), RHAS_SALA4  (B5F0M9), 
RHAS_SALAR  (A9MI64), RHAS_SALCH  (Q57HG8), RHAS_SALDC  (B5FPP5), 
RHAS_SALEP  (B5QWY4), RHAS_SALG2  (B5RFC3), RHAS_SALHS  (B4TBY3), 
RHAS_SALNS  (B4SZZ3), RHAS_SALPA  (Q5PKG2), RHAS_SALPB  (A9MZC8), 
RHAS_SALPC  (C0Q3L4), RHAS_SALPK  (B5BJG8), RHAS_SALSV  (B4TPQ9), 
RHAS_SALTI  (P0A2T0), RHAS_SALTY  (P0A2S9), RHAS_SHIBS  (Q31U84), 
RHAS_SHIDS  (Q32A70), RHAS_SHIF8  (Q0SZ95), RHAS_SHIFL  (Q83PE0), 
RHAS_SHISS  (Q3YV71), RHAS_YERP3  (A7FN80), RHAS_YERPB  (B2K1W5), 
RHAS_YERPG  (A9QYR8), RHAS_YERPP  (A4TRS8), RHAS_YERPS  (Q66FF2), 
RHAS_YERPY  (B1JNC5), RIPA_CORDI  (Q6NI56), RIPA_COREF  (Q8FQS2), 
RIPA_CORGL  (Q8NRR3), RNS_ECOLX   (P16114), ROB_ECO57   (P0ACI1), 
ROB_ECOLI   (P0ACI0), ROB_SHIFL   (P0ACI2), SIRC_SALTI  (Q8Z4A6), 
SIRC_SALTS  (E1WAB2), SIRC_SALTY  (P0CL09), SOXS_ECO57  (P0A9E4), 
SOXS_ECOL6  (P0A9E3), SOXS_ECOLI  (P0A9E2), SOXS_SALTY  (Q56143), 
TCPN_VIBC3  (A5F384), TCPN_VIBCH  (P0C6D6), TETD_ECOLX  (P28816), 
THCR_RHOER  (P43462), URER_ECOLX  (P32326), URER_PROMH  (Q02458), 
VIRF_SHIDY  (P0A2T2), VIRF_SHIFL  (P0A2T1), VIRF_SHISO  (P0A2T3), 
VIRF_YERE8  (A1JU91), VIRF_YEREN  (P0C2V5), XYLR_ECO57  (P0ACI5), 
XYLR_ECOL6  (P0ACI4), XYLR_ECOLI  (P0ACI3), XYLR_HAEIN  (P45043), 
XYLS1_PSEPU (Q04710), XYLS2_PSEPU (Q05092), XYLS3_PSEPU (Q05335), 
XYLS4_PSEPU (Q04713), XYLS_PSEPU  (P07859), Y1052_HAEIN (P45008), 
Y4FK_RHISN  (P55449), YCGK_PSEVC  (P43461), YDCO_ECOLI  (P76103), 
YDEC_BACSU  (P96660), YDEE_BACSU  (P96662), YDEO_ECO57  (Q8X4Z9), 
YDEO_ECOL6  (Q8FHG0), YDEO_ECOLI  (P76135), YDEO_SHIFL  (Q83RF4), 
YEAM_ECOLI  (P76241), YESS_BACSU  (O31522), YFIF_BACSU  (P54722), 
YIDL_ECOLI  (P31449), YIJO_ECOLI  (P32677), YISR_BACSU  (P40331), 
YMCR_STRLA  (P43458), YOBQ_BACSU  (O34901), YPDC_ECOLI  (P77396)
» More

UniProtKB/Swiss-Prot
False negative sequences
43 sequences

FEAR_ECOLI  (Q47129), ORUR_PSEAE  (P72171), RAMA_ENTCL  (P55922), 
RHAR_ERWCT  (Q6DA21), RHAR_PECCP  (C6DJR5), RHAS_ESCF3  (B7LVD8), 
RHAS_MANSM  (Q65Q31), RHAS_SHIB3  (B2TVP7), RHAS_YERPA  (Q1C0W1), 
RHAS_YERPE  (Q8ZJ00), RHAS_YERPN  (Q1CEB5), RHRA_RHIME  (Q9Z3Q6), 
VIRS_MYCTU  (Q06861), VQSM_PSEAE  (Q9I1P2), Y077_STAAW  (Q8NYT6), 
Y078_STAAS  (Q6GD21), Y084_STAAC  (Q5HJR8), Y097_STAAN  (Q7A882), 
Y101_STAAM  (Q99XB1), Y107_STAAR  (Q6GKK1), Y1395_MYCTU (P68913), 
Y1430_MYCBO (P68912), Y161_STAAB  (Q2YV56), Y165_STAES  (Q8CQE3), 
Y184_STAA8  (Q2G1E1), Y198_STAAS  (Q6GCQ3), Y198_STAAW  (Q8NYJ9), 
Y201_STAAC  (Q5HJF7), Y214_STAAR  (Q6GK93), Y215_STAAN  (Q7A7X9), 
Y217_STAA3  (Q2FK47), Y223_STAAM  (Q99X00), Y2406_STAEQ (Q5HKE0), 
YBCM_ECOLI  (P77634), YBFI_BACSU  (O31449), YBFP_BACSU  (O31456), 
YDIP_ECOLI  (P77402), YHTH1_STAAU (Q936F1), YKGA_ECOLI  (P77601), 
YKGD_ECOLI  (P77379), YNEL_ECOLI  (P76138), YQHC_ECOLI  (Q46855), 
YTDP_BACSU  (O32071)
» More

UniProtKB/Swiss-Prot
False positive sequences
101 sequences

AAM_RHOER   (K9NBS6), ABGR_ECOLI  (P77744), APY4_ARATH  (Q8H1D8), 
ARGD_HAEDU  (Q7VMS5), AROB_SYNP6  (Q5N3D4), ARSB_YEREN  (P74985), 
AT21A_ARATH (P0CH01), ATKA_PSEAE  (P57683), ATKA_PSEPK  (Q88FD7), 
ATKA_PSESM  (Q883V6), BIOC_DECAR  (Q47C02), BPNT1_MOUSE (Q9Z0S1), 
BRE1A_ORYSI (A2XW69), BRE1A_ORYSJ (Q7XU27), CBID_PROM9  (Q31DE8), 
CHB_SERMA   (Q54468), CORA_YERPE  (Q8ZAG5), CORA_YERPS  (Q66FY7), 
ENPP1_RAT   (Q924C3), ERD6_ARATH  (O04036), FABD_HAEIN  (P43712), 
FKS3_YEAST  (Q04952), FTSW_ACIAD  (Q6FFC1), GATB_FRASC  (Q2J6U8), 
GATB_THEFY  (Q47SC0), GRM6_HUMAN  (O15303), GRM6_MOUSE  (Q5NCH9), 
GRM6_RABIT  (Q863I4), GRM6_RAT    (P35349), HLDE_THICR  (Q31IC2), 
KUP1_SPHWW  (A5V2F7), L2_FOWPN    (P15911), L_CCHFI     (Q6TQR6), 
MATK_HELAN  (Q1KXX8), MEND_BACA2  (A7Z812), MEND_BACAH  (A0RK76), 
MEND_BACAN  (Q81K94), MEND_BACCN  (A7GU91), MEND_BACCR  (Q816H7), 
MEND_BACCZ  (Q632I2), MEND_BACHK  (Q6HC26), MEND_BACP2  (A8FGK9), 
MEND_BACSU  (P23970), MEND_BACWK  (A9VM77), MEND_GEOKA  (Q5KVX6), 
MEND_GEOTN  (A4IS14), MEND_LISIN  (Q92AY5), MEND_LISMF  (Q71YZ2), 
MEND_LISMO  (Q8Y6K9), MEND_LISW6  (A0AJC9), METK_SALRD  (Q2RYY4), 
METN_CHLCV  (Q823C4), MPRGB_DANRE (Q6DC77), MURA1_STRP1 (P65458), 
MURA1_STRP3 (P0DC44), MURA1_STRP6 (Q5XCX7), MURA1_STRP8 (P65459), 
MURA1_STRPM (Q48UD0), MURA1_STRPQ (P0DC45), MUTS_AROAE  (Q5NYP9), 
NAR1_LODEL  (A5DSI2), NAT12_ARATH (Q3E7D0), NHAA2_CLAM3 (A5CTB2), 
NR5A2_CHICK (O42101), POL2_CNSV   (Q8QVU9), PRP28_ASPCL (A1CHL3), 
PRP28_ASPFU (Q4WPE9), PRP28_ASPNC (A2QIL2), PRP28_ASPOR (Q2UH00), 
PRP28_ASPTN (Q0CLX0), PRP28_BOTFB (A6RJA2), PRP28_COCIM (Q1DMX8), 
PRP28_EMENI (Q5BCU6), PRP28_GIBZE (Q4I7F9), PRP28_NEOFI (A1CX72), 
PRP28_NEUCR (Q7SEL0), PRP28_PHANO (Q0UWC8), PRP28_SCLS1 (A7EGG4), 
PURA_ACIAD  (Q6FCS7), RH1_ARATH   (Q7FGZ2), RP54_VIBAN  (O08429), 
S2610_HUMAN (Q8NG04), S4A10_BOVIN (Q32LP4), S4A10_HUMAN (Q6U841), 
S4A10_MOUSE (Q5DTL9), S4A10_RAT   (Q80ZA5), SELA_HAEDU  (Q7VKC2), 
SEM4A_HUMAN (Q9H3S1), SEM4B_MOUSE (Q62179), SYFB_XANAC  (Q8PJE5), 
SYG_MYCPA   (Q73Y21), SYG_NOCFA   (Q5YZT7), SYV_SCHPO   (O75005), 
TLR9_BOVIN  (Q5I2M5), TLR9_SHEEP  (Q5I2M4), TM235_HUMAN (A6NFC5), 
UFL1_NEMVE  (A7S2N8), YB95_ARATH  (Q8W487), YBJE_ECOLI  (P75826), 
YKOC_BACSU  (O34572), YPD9_CAEEL  (Q11188)
» More

PDB
[Detailed view]
9 PDB

1BL0; 1D5Y; 1WPK; 1XS9; 1ZGW; 2K9S; 3GBG; 4FE4; 4FE7

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