Entry: PS00051

General information about the entry
Entry name RIBOSOMAL_L39E
Accession number PS00051
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00050
Name and characterization of the entry
DescriptionRibosomal protein L39e signature.
Pattern [KRM]-[PTKS]-x(3)-[LIVMFG]-x(2)-[NHS]-x(3)-R-[DNHY]-W-R-[RS].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 74 hits in 74 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 74 hits in 74 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 5
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 93.67 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RL391_ARATH (P51424), RL391_ORYSJ (Q6KAJ8), RL392_ARATH (Q8L8W6), 
RL392_ORYSJ (P51426), RL393_ORYSJ (Q5SMI4), RL39L_HUMAN (Q96EH5), 
RL39_AERPE  (P59472), RL39_ARCFU  (O28212), RL39_ASHGO  (Q758D8), 
RL39_BOVIN  (Q3T051), RL39_CAEEL  (P52814), RL39_CALMQ  (A8MAL5), 
RL39_CANAX  (Q96W55), RL39_CHICK  (Q98TF5), RL39_DEBHA  (Q6BHV8), 
RL39_DROME  (O16130), RL39_ENCCU  (Q8SQP8), RL39_HALLT  (B9LUV0), 
RL39_HALMA  (P22452), RL39_HALS3  (B0R7X9), RL39_HALSA  (Q9HMM9), 
RL39_HALWD  (Q18EU6), RL39_HUMAN  (P62891), RL39_HYPBU  (A2BN55), 
RL39_ICTPU  (Q90YS9), RL39_KLULA  (Q6CW22), RL39_KLUMA  (P48536), 
RL39_MAIZE  (P51425), RL39_META3  (A6UVQ6), RL39_METAC  (Q8TIN2), 
RL39_METBF  (Q46FA3), RL39_METBU  (Q12ZJ3), RL39_METJA  (P54056), 
RL39_METKA  (Q8TUY3), RL39_METLZ  (A2STI9), RL39_METM5  (A4G029), 
RL39_METM6  (A9A8D5), RL39_METM7  (A6VIE9), RL39_METMA  (Q8PYQ5), 
RL39_METMJ  (A3CWZ6), RL39_METMP  (Q6M0V9), RL39_METS5  (A4YH79), 
RL39_METTH  (O27650), RL39_METVS  (A6URE0), RL39_MOUSE  (P62892), 
RL39_PICTO  (Q6L2L2), RL39_PLUXY  (Q6F482), RL39_PYRAB  (Q9UYI8), 
RL39_PYRAE  (Q8ZTX6), RL39_PYRAR  (A4WLS6), RL39_PYRCJ  (A3MUU4), 
RL39_PYRFU  (Q8U3S6), RL39_PYRHO  (P59473), RL39_PYRIL  (A1RRN8), 
RL39_PYRKO  (Q5JGT6), RL39_PYRNV  (B1YAF1), RL39_RAT    (P62893), 
RL39_SCHPO  (P05767), RL39_SPOFR  (Q962S4), RL39_SULAC  (P13005), 
RL39_SULIA  (C3MZB1), RL39_SULIK  (C4KII9), RL39_SULIL  (C3MR76), 
RL39_SULIM  (C3MXG5), RL39_SULIN  (C3NGA3), RL39_SULIY  (C3N7D1), 
RL39_SULSO  (Q980F9), RL39_SULTO  (Q971I1), RL39_TETTS  (P0DJ61), 
RL39_THEAC  (Q9HM18), RL39_THEGJ  (C5A7H4), RL39_THESM  (C6A264), 
RL39_THEVO  (Q97CU2), RL39_YEAST  (P04650)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RL39_DESK1  (B8D5Q7), RL39_METPE  (B8GEU4), RL39_METS3  (A5UL33), 
RL39_STAMF  (A3DNH3), RL39_THEON  (B6YWY4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1YJ9; 3IZS; 3J21; 3O58; 3O5H; 3U5E; 3U5I; 4A18; 4A19; 4A1B; 4A1D; 4B6A;

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