Entry: PS00051

Forthcoming changes to the profile format
General information about the entry

Entry name [info] RIBOSOMAL_L39E
Accession [info] PS00051
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00050

Name and characterization of the entry

Description [info] Ribosomal protein L39e signature.
Pattern [info]
[KRM]-[PTKS]-x(3)-[LIVMFG]-x(2)-[NHS]-x(3)-R-[DNHY]-W-R-[RS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 74 in 74 different sequences
Number of true positive hits 74 in 74 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 5
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 93.67 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
74 sequences

RL391_ARATH (P51424), RL391_ORYSJ (Q6KAJ8), RL392_ARATH (Q8L8W6), 
RL392_ORYSJ (P51426), RL393_ORYSJ (Q5SMI4), RL39L_HUMAN (Q96EH5), 
RL39_AERPE  (P59472), RL39_ARCFU  (O28212), RL39_ASHGO  (Q758D8), 
RL39_BOVIN  (Q3T051), RL39_CAEEL  (P52814), RL39_CALMQ  (A8MAL5), 
RL39_CANAX  (Q96W55), RL39_CHICK  (Q98TF5), RL39_DEBHA  (Q6BHV8), 
RL39_DROME  (O16130), RL39_ENCCU  (Q8SQP8), RL39_HALLT  (B9LUV0), 
RL39_HALMA  (P22452), RL39_HALS3  (B0R7X9), RL39_HALSA  (Q9HMM9), 
RL39_HALWD  (Q18EU6), RL39_HUMAN  (P62891), RL39_HYPBU  (A2BN55), 
RL39_ICTPU  (Q90YS9), RL39_KLULA  (Q6CW22), RL39_KLUMA  (P48536), 
RL39_MAIZE  (P51425), RL39_META3  (A6UVQ6), RL39_METAC  (Q8TIN2), 
RL39_METBF  (Q46FA3), RL39_METBU  (Q12ZJ3), RL39_METJA  (P54056), 
RL39_METKA  (Q8TUY3), RL39_METLZ  (A2STI9), RL39_METM5  (A4G029), 
RL39_METM6  (A9A8D5), RL39_METM7  (A6VIE9), RL39_METMA  (Q8PYQ5), 
RL39_METMJ  (A3CWZ6), RL39_METMP  (Q6M0V9), RL39_METS5  (A4YH79), 
RL39_METTH  (O27650), RL39_METVS  (A6URE0), RL39_MOUSE  (P62892), 
RL39_PICTO  (Q6L2L2), RL39_PLUXY  (Q6F482), RL39_PYRAB  (Q9UYI8), 
RL39_PYRAE  (Q8ZTX6), RL39_PYRAR  (A4WLS6), RL39_PYRCJ  (A3MUU4), 
RL39_PYRFU  (Q8U3S6), RL39_PYRHO  (P59473), RL39_PYRIL  (A1RRN8), 
RL39_PYRNV  (B1YAF1), RL39_RAT    (P62893), RL39_SCHPO  (P05767), 
RL39_SPOFR  (Q962S4), RL39_SULAC  (P13005), RL39_SULIA  (C3MZB1), 
RL39_SULIK  (C4KII9), RL39_SULIL  (C3MR76), RL39_SULIM  (C3MXG5), 
RL39_SULIN  (C3NGA3), RL39_SULIY  (C3N7D1), RL39_SULSO  (Q980F9), 
RL39_SULTO  (Q971I1), RL39_TETTS  (P0DJ61), RL39_THEAC  (Q9HM18), 
RL39_THEGJ  (C5A7H4), RL39_THEKO  (Q5JGT6), RL39_THESM  (C6A264), 
RL39_THEVO  (Q97CU2), RL39_YEAST  (P04650)
» More

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

RL39_DESK1  (B8D5Q7), RL39_METPE  (B8GEU4), RL39_METS3  (A5UL33), 
RL39_STAMF  (A3DNH3), RL39_THEON  (B6YWY4)
» More

PDB
[Detailed view]
17 PDB

1YJ9; 3IZS; 3J21; 3J39; 3J3B; 3O58; 3O5H; 3U5E; 3U5I; 4A18; 4A19; 4A1B; 4A1D; 4B6A; 4BYN; 4BYU; 4HUB
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission