Entry: PS00076

General information about the entry
Entry name PYRIDINE_REDOX_1
Accession number PS00076
Entry type PATTERN
Date APR-1990 (CREATED); OCT-1993 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00073
Name and characterization of the entry
DescriptionPyridine nucleotide-disulphide oxidoreductases class-I active site.
Pattern G-G-x-C-[LIVA]-x(2)-G-C-[LIVM]-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 140 hits in 140 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 140 hits in 140 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 3
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 99.29 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 4,disulfide
  • `Interesting' site in the pattern: 8,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DLDH1_ARATH (Q9M5K3), DLDH1_BACSU (P21880), DLDH1_GEOSE (P11959), 
DLDH1_PSEAE (Q9I1L9), DLDH1_PSEPU (P09063), DLDH2_ARATH (Q9M5K2), 
DLDH2_BACSU (P54533), DLDH2_HALMA (Q5UYG6), DLDH2_PSEAE (Q9I3D1), 
DLDH2_PSEPU (P31052), DLDH3_BACSU (O34324), DLDH3_HALMA (Q5UWH2), 
DLDH3_PSEAE (Q9HUY1), DLDH3_PSEPU (P31046), DLDH_ACHLA  (P35484), 
DLDH_AZOVI  (P18925), DLDH_BUCAI  (P57303), DLDH_BUCAP  (Q8K9T7), 
DLDH_BUCBP  (Q89AQ8), DLDH_CAEEL  (O17953), DLDH_CANFA  (P49819), 
DLDH_CHLMU  (Q9PJI3), DLDH_CHLP8  (O50311), DLDH_CHLPN  (Q9Z773), 
DLDH_CHLTE  (Q8KCW2), DLDH_CHLTR  (O84561), DLDH_CORGL  (Q8NTE1), 
DLDH_CRIGR  (Q8CIZ7), DLDH_CUPNH  (P52992), DLDH_DICDI  (Q54EW8), 
DLDH_ECO57  (P0A9P2), DLDH_ECOL6  (P0A9P1), DLDH_ECOLI  (P0A9P0), 
DLDH_HAEIN  (P43784), DLDH_HALSA  (Q9HN74), DLDH_HALVD  (Q04829), 
DLDH_HUMAN  (P09622), DLDH_HYMDI  (P80647), DLDH_MACFA  (Q60HG3), 
DLDH_MANSE  (O18480), DLDH_MESAU  (Q811C4), DLDH_MOUSE  (O08749), 
DLDH_MYCBO  (P66005), DLDH_MYCGE  (P47513), DLDH_MYCLE  (Q50068), 
DLDH_MYCPN  (P75393), DLDH_MYCTU  (P66004), DLDH_PEA    (P31023), 
DLDH_PIG    (P09623), DLDH_PONAB  (Q5R4B1), DLDH_PSEFL  (P14218), 
DLDH_RAT    (Q6P6R2), DLDH_RHIEC  (O05940), DLDH_RHOCA  (P95596), 
DLDH_SCHPO  (O00087), DLDH_SHIFL  (P0A9P3), DLDH_STAAC  (Q5HGY8), 
DLDH_STAAM  (P0A0E6), DLDH_STAAN  (P99084), DLDH_STAAR  (Q6GHY9), 
DLDH_STAAS  (Q6GAB8), DLDH_STAAU  (P0A0E8), DLDH_STAAW  (P0A0E7), 
DLDH_SYNY3  (P72740), DLDH_THESS  (P85207), DLDH_TRYBB  (Q04933), 
DLDH_TRYCR  (P90597), DLDH_VIBCH  (Q9KPF6), DLDH_VIBPA  (O50286), 
DLDH_YEAST  (P09624), DLDH_ZYMMO  (P50970), GASHR_MARGR (D0VWY5), 
GSHRC_ARATH (P48641), GSHRC_BRARP (O04955), GSHRC_ORYSJ (P48642), 
GSHRC_PEA   (Q43621), GSHRP_ARATH (P42770), GSHRP_PEA   (P27456), 
GSHRP_SOYBN (P48640), GSHRP_SPIOL (Q43154), GSHRP_TOBAC (P80461), 
GSHR_ASHGO  (Q74ZK4), GSHR_BURCE  (P48639), GSHR_CAEEL  (P30635), 
GSHR_CALJA  (A2TIL1), GSHR_CANGA  (Q6FRV2), GSHR_DEBHA  (Q6BPI1), 
GSHR_DICDI  (Q8T137), GSHR_ECOLI  (P06715), GSHR_HAEIN  (P43783), 
GSHR_HUMAN  (P00390), GSHR_KLULA  (Q6HA23), GSHR_MOUSE  (P47791), 
GSHR_NEUCR  (Q873E8), GSHR_NOSS1  (P48638), GSHR_PLAF7  (O15770), 
GSHR_PLAFK  (Q94655), GSHR_PSEAE  (P23189), GSHR_SCHPO  (P78965), 
GSHR_SPISP  (P11804), GSHR_STRTR  (Q60151), GSHR_YARLI  (Q6C5H4), 
GSHR_YEAST  (P41921), MERA_ACICA  (Q52109), MERA_ALCSP  (P94188), 
MERA_BACCE  (P16171), MERA_ENTAG  (P94702), MERA_PSEAI  (P00392), 
MERA_PSEFL  (Q51772), MERA_SERMA  (P08662), MERA_SHEPU  (Q54465), 
MERA_SHIFL  (P08332), MERA_STAAU  (P0A0E5), MERA_STAES  (P0A0E4), 
MERA_STRLI  (P30341), MERA_THIFE  (P17239), MTR_MYCTU   (O07927), 
TRXR1_BOVIN (O62768), TRXR1_CAEEL (Q17745), TRXR1_DROME (P91938), 
TRXR1_EMIHU (B9A1H3), TRXR1_HUMAN (Q16881), TRXR1_MOUSE (Q9JMH6), 
TRXR1_PONAB (Q5NVA2), TRXR1_RAT   (O89049), TRXR2_BOVIN (Q9N2I8), 
TRXR2_DROME (Q9VNT5), TRXR2_HUMAN (Q9NNW7), TRXR2_MOUSE (Q9JLT4), 
TRXR2_PLAF7 (P61076), TRXR2_RAT   (Q9Z0J5), TRXR3_HUMAN (Q86VQ6), 
TRXR3_MOUSE (Q99MD6), TRXR_PLAF5  (Q25861), TYTR_CRIFA  (P39040), 
TYTR_LEIDO  (P39050), TYTR_TRYBB  (P39051), TYTR_TRYCO  (P13110), 
TYTR_TRYCR  (P28593), YKGC_ECOLI  (P77212)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TRXR1_PIG   (Q9MYY8)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
DLDH_POPEU  (P84545), DLDH_SOLTU  (P80503), GSHR_RAT    (P70619)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1AOG; 1BWC; 1BZL; 1DXL; 1EBD; 1FEA; 1FEB; 1FEC; 1GER; 1GES; 1GET; 1GEU; 1GRA; 1GRB; 1GRE; 1GRF; 1GRH; 1GRT; 1GXF; 1H6V; 1JEH; 1K4Q; 1LPF; 1LVL; 1NDA; 1ONF; 1TYP; 1TYT; 1V59; 1W1C; 1W1E; 1XAN; 1ZDL; 1ZK7; 1ZKQ; 1ZMC; 1ZMD; 1ZX9; 1ZY8; 2A8X; 2AAQ; 2CFY; 2F5Z; 2GH5; 2GRT; 2HQM; 2J3N; 2NVK; 2QAE; 2R9Z; 2RAB; 2TPR; 2WBA; 2ZZ0; 2ZZB; 2ZZC; 3DGH; 3DGZ; 3DH9; 3DJG; 3DJJ; 3DK4; 3DK8; 3DK9; 3EAN; 3EAO; 3GRS; 3GRT; 3II4; 3LAD; 3QFA; 3QFB; 3RNM; 3SQP; 4B1B; 4GR1; 4GRT; 5GRT;

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