PROSITE entry PS00094
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General information about the entry
| Entry name [info] | C5_MTASE_1 |
| Accession [info] | PS00094 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00089 |
| Associated ProRule [info] | PRU10018 |
Name and characterization of the entry
| Description [info] | C-5 cytosine-specific DNA methylases active site. |
| Pattern [info] |
[DENKS]-x-[FLIV]-x(2)-[GSTC]-x-P-C-x-{V}-[FYWLIM]-S.
|
Numerical results [info]
| Total number of hits | 99 in 99 different sequences |
| Number of true positive hits | 88 in 88 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 11 in 11 different sequences |
| Number of false negative sequences | 15 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 88.89 % |
| Recall (true positives / (true positives + false negatives)) | 85.44 % |
Comments [info]
| Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | active_site at position 8 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
88 sequences
CMT1_MAIZE (Q9AXT8), CMT1_ORYSJ (A0A0P0VUY4), CMT2_MAIZE (Q9ARI6), CMT2_ORYSJ (Q5KQL9), CMT3_ARATH (Q94F88), CMT3_MAIZE (Q8LPU5), CMT3_ORYSJ (C0SQ89), DAM_BPP1(Q71TL0), DCM_ECO57 (P0AEE0), DCM_ECOLI (P0AED9), DNM1A_ORYSJ (Q7Y1I7), DNM1B_ORYSJ (B1Q3J6), DNM3A_CHICK (Q4W5Z4), DNM3A_HUMAN (Q9Y6K1), DNM3A_MOUSE (O88508), DNM3A_RAT (Q1LZ53), DNM3B_HUMAN (Q9UBC3), DNM3B_MOUSE (O88509), DNM3C_MOUSE (P0DOY1), DNMT1_ARATH (P34881), DNMT1_BOVIN (Q24K09), DNMT1_CHICK (Q92072), DNMT1_HUMAN (P26358), DNMT1_MOUSE (P13864), DNMT1_PARLI (Q27746), DNMT1_RAT (Q9Z330), DNMT2_ARATH (Q9M0S8), DNMT3_ARATH (Q9T0I1), DNMT4_ARATH (O23273), DNMT_FRG3G (Q67472), MT872_AERPE (Q9YDP3), MTA1_CELCE (P31974), MTA1_THAGE (P94147), MTAA_PICP2 (P34882), MTAP_ARTPN (D4ZX35), MTB1_BACP9 (P0DW08), MTB1_BREBE (P34905), MTB1_BREEP (P10283), MTB1_HERAU (P25262), MTB1_LYSSH (P13906), MTB1_NEIGO (Q59603), MTB5_NEIGO (Q59605), MTB6_BACSF (P43420), MTBA_ANEAE (P19888), MTBB_BPSPB (P09389), MTBF_BACIU (P17044), MTBP_BACSU (P68585), MTBP_BPPHT (P68586), MTBR_BACIU (P06530), MTBR_BPRH1 (P09915), MTBS_BPSPR (P00476), MTC1_HERAU (P25263), MTC1_PBCVI (P36216), MTC2_HERAU (P25264), MTD1_DESNO (P05302), MTD1_HERAU (P24600), MTD2_HERAU (P25265), MTD5_DACSA (P50185), MTE1_HERAU (P25266), MTE2_ECOLX (P05101), MTE8_ECOLX (P50196), MTF1_FUSNU (P34906), MTF7_NEIGO (Q59606), MTG1_AVIVO (P25282), MTG1_HERAU (P25267), MTG2_AVIVO (P25283), MTH1_HAEPH (P05102), MTH2_HAEAE (O30868), MTH2_HAEPA (P15446), MTH3_HAEAE (P20589), MTH5_HAEIN (P45000), MTHA_HAEPH (P50192), MTM1_MORSP (P11408), MTM4_NEIGO (P31033), MTN1_LENAE (P50188), MTN4_NEILA (P50182), MTNX_NEILA (P24581), MTP1_PSYTA (O33481), MTP2_NEIGO (P08455), MTS1_SALIN (P09795), MTS2_SHISO (P34879), MTS3_STAAU (P16668), MTS9_STAAU (P23737), MTSA_LACLC (P34877), MTSB_LACLC (P34878), MTSI_SPISQ (P15840), MTX2_XANOR (P52311), YDIP_BACSU (O34680)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
15 sequences
DRM1L_ARATH (Q9LXE5), DRM2_ARATH (Q9M548), MT36_OCEIH (Q8EL95), MT51_METJA (Q57983), MTA1_ACEPA (O52702), MTD1_NEIMC (Q9RLM4), MTHT_METTF (P29567), MTM7_METJA (Q58600), MTS1_STRAH (O31073), PMT1M_SCHPO (P40999), TRDMT_BOVIN (Q7YS61), TRDMT_HUMAN (O14717), TRDMT_MOUSE (O55055), TRDMT_RAT (Q4G073), YDIO_BACSU (O34939)» more |
| UniProtKB/Swiss-Prot False positive sequences |
11 sequences
AF111_ALTAL (Q50LG1), CCN5_HUMAN (O76076), GATA_NEOSM (Q2GEE7), MEND_PHOLL (Q7N2K3), OOPDA_ARATH (Q94AM1), RTPR_LACAC (Q5FMX8), RTPR_LACH4 (A8YW74), RTPR_LEVBA (Q03PB4), SYA_METBU (Q12U25), Y94X_SYNY3 (P77971), YME2_CANAL (Q5A061)» more |
| PDB [Detailed view] |
92 PDB
10MH; 1DCT; 1FJX; 1HMY; 1M0E; 1MHT; 1SKM; 1SVU; 2C7O; 2C7P; 2C7Q; 2C7R; 2HMY; 2HR1; 2I9K; 2QRV; 2UYC; 2UYH; 2UZ4; 2Z6Q; 2Z6U; 2ZCJ; 3AV4; 3AV5; 3AV6; 3EEO; 3MHT; 3PT6; 3PT9; 3PTA; 3SWR; 4DA4; 4FSX; 4FT2; 4FT4; 4MHT; 4U7P; 4U7T; 4WXX; 4YOC; 5CIY; 5GUT; 5GUV; 5LOD; 5MHT; 5WY1; 5YX2; 6BRR; 6F57; 6KDA; 6KDB; 6KDL; 6KDP; 6KDT; 6MHT; 6PA7; 6U8P; 6U8V; 6U8W; 6U8X; 6U90; 6U91; 6W89; 6W8B; 6W8D; 6W8J; 6W8V; 6W8W; 6X9I; 6X9J; 6X9K; 7MHT; 7SFC; 7SFD; 7SFE; 7SFF; 7SFG; 7UBU; 7V0E; 7X9D; 7XI9; 7XIB; 8EIH; 8EII; 8EIJ; 8EIK; 8MHT; 8TDR; 8TE1; 8TE3; 8TE4; 9MHT » more |