Entry: PS00095

General information about the entry

Entry name [info] C5_MTASE_2
Accession [info] PS00095
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2003 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00089

Name and characterization of the entry

Description [info] C-5 cytosine-specific DNA methylases C-terminal signature.
Pattern [info]
[RKQGTF]-x(2)-G-N-[SA]-[LIVF]-x-[VIP]-x-[LVMT]-x(3)-[LIVM]-x(3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 74 in 74 different sequences
Number of true positive hits 64 in 64 different sequences
Number of 'unknown' hits 0
Number of false positive hits 10 in 10 different sequences
Number of false negative sequences 23
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 86.49 %
Recall (true positives / (true positives + false negatives)) 73.56 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
64 sequences

DCM_ECO57   (P0AEE0    ), DCM_ECOLI   (P0AED9    ), DNM1A_ORYSJ (Q7Y1I7    ), 
DNM1B_ORYSJ (B1Q3J6    ), DNMT1_ARATH (P34881    ), DNMT1_BOVIN (Q24K09    ), 
DNMT1_CHICK (Q92072    ), DNMT1_HUMAN (P26358    ), DNMT1_MOUSE (P13864    ), 
DNMT1_PARLI (Q27746    ), DNMT1_RAT   (Q9Z330    ), DNMT2_ARATH (Q9M0S8    ), 
DNMT3_ARATH (Q9T0I1    ), DNMT4_ARATH (O23273    ), MT36_OCEIH  (Q8EL95    ), 
MTA1_THAGE  (P94147    ), MTAB_SYNP2  (P34883    ), MTB1_BREEP  (P10283    ), 
MTB1_HERAU  (P25262    ), MTB1_LYSSH  (P13906    ), MTB6_BACSF  (P43420    ), 
MTBA_ANEAE  (P19888    ), MTBF_BACIU  (P17044    ), MTBP_BACSU  (P68585    ), 
MTBP_BPPHT  (P68586    ), MTBR_BACIU  (P06530    ), MTBR_BPRH1  (P09915    ), 
MTBS_BPSPR  (P00476    ), MTC1_HERAU  (P25263    ), MTC2_HERAU  (P25264    ), 
MTD1_DESNO  (P05302    ), MTD1_HERAU  (P24600    ), MTD2_HERAU  (P25265    ), 
MTD5_DACSA  (P50185    ), MTE1_HERAU  (P25266    ), MTE2_ECOLX  (P05101    ), 
MTE8_ECOLX  (P50196    ), MTF1_FUSNU  (P34906    ), MTH1_HAEPH  (P05102    ), 
MTH2_HAEAE  (O30868    ), MTH3_HAEAE  (P20589    ), MTH5_HAEIN  (P45000    ), 
MTHA_HAEPH  (P50192    ), MTHT_METTF  (P29567    ), MTM1_MORSP  (P11408    ), 
MTM4_NEIGO  (P31033    ), MTN1_NOCAE  (P50188    ), MTNX_NEILA  (P24581    ), 
MTP1_PSYTA  (O33481    ), MTP2_NEIGO  (P08455    ), MTS1_SALIN  (P09795    ), 
MTS2_SHISO  (P34879    ), MTS3_STAAU  (P16668    ), MTS9_STAAU  (P23737    ), 
MTSA_LACLC  (P34877    ), MTSB_LACLC  (P34878    ), MTSI_SPISQ  (P15840    ), 
MTX2_XANOR  (P52311    ), PMT1M_SCHPO (P40999    ), TRDMT_BOVIN (Q7YS61    ), 
TRDMT_HUMAN (O14717    ), TRDMT_MOUSE (O55055    ), TRDMT_RAT   (Q4G073    ), 
YDIP_BACSU  (O34680    )
» more

UniProtKB/Swiss-Prot
False negative sequences
23 sequences

DNM3A_CHICK (Q4W5Z4    ), DNM3A_HUMAN (Q9Y6K1    ), DNM3A_MOUSE (O88508    ), 
DNM3A_RAT   (Q1LZ53    ), DNM3B_HUMAN (Q9UBC3    ), DNM3B_MOUSE (O88509    ), 
DRM1L_ARATH (Q9LXE5    ), DRM2_ARATH  (Q9M548    ), MT51_METJA  (Q57983    ), 
MT52_METJA  (Q58600    ), MTA1_CELCE  (P31974    ), MTAP_ARTPN  (D4ZX35    ), 
MTB1_BREBE  (P34905    ), MTB1_NEIGO  (Q59603    ), MTB5_NEIGO  (Q59605    ), 
MTC1_PBCVI  (P36216    ), MTD1_NEIMC  (Q9RLM4    ), MTF7_NEIGO  (Q59606    ), 
MTG1_AVIPA  (P25282    ), MTG2_AVIPA  (P25283    ), MTH2_HAEPA  (P15446    ), 
MTN4_NEILA  (P50182    ), YDIO_BACSU  (O34939    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

MTBB_BPSPB  (P09389    ), MTG1_HERAU  (P25267    )

		
UniProtKB/Swiss-Prot
False positive sequences
10 sequences

ATPB_MYCGI  (A4T8K2    ), ATPB_MYCLE  (P45823    ), CDAA_BACSU  (Q45589    ), 
GCY8E_DROME (Q8INF0    ), OBG_BORAP   (Q0SM73    ), OBG_BORBP   (Q65ZZ3    ), 
OBG_BORBU   (O51722    ), OBG_BORBZ   (B7J0M7    ), WCAF_ECOLI  (P0ACD2    ), 
WCAF_SHIFL  (P0ACD3    )
» more

PDB
[Detailed view]
43 PDB

10MH; 1DCT; 1FJX; 1G55; 1HMY; 1M0E; 1MHT; 1SKM; 1SVU; 2C7O; 2C7P; 2C7Q; 2C7R; 2HMY; 2HR1; 2I9K; 2UYC; 2UYH; 2UZ4; 2Z6A; 2Z6Q; 2Z6U; 2ZCJ; 3AV4; 3AV5; 3AV6; 3EEO; 3MHT; 3PT6; 3PT9; 3PTA; 3SWR; 3UBT; 4DA4; 4MHT; 4WXX; 4YOC; 5CIY; 5MHT; 6MHT; 7MHT; 8MHT; 9MHT
» more

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