Entry: PS00105

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General information about the entry

Entry name [info] AA_TRANSFER_CLASS_1
Accession [info] PS00105
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00098

Name and characterization of the entry

Description [info] Aminotransferases class-I pyridoxal-phosphate attachment site.
Pattern [info]
[GS]-[LIVMFYTAC]-[GSTA]-K-x(2)-[GSALVN]-[LIVMFA]-x-[GNAR]-{V}-R-[LIVMA]-
[GA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 170 in 170 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits
Number of false positive hits 19 in 19 different sequences
Number of false negative sequences 102
Number of 'partial' sequences 6
Precision (true positives / (true positives + false positives)) 88.82 %
Recall (true positives / (true positives + false negatives)) 59.68 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
151 sequences

1A111_ARATH (Q9S9U6), 1A112_ARATH (Q8GYY0), 1A11_ARATH  (Q06429), 
1A11_CUCMA  (P23599), 1A11_CUCPE  (P23279), 1A11_ORYSI  (A2XLL2), 
1A11_ORYSJ  (Q10DK7), 1A11_PRUMU  (Q9MB95), 1A12_ARATH  (Q06402), 
1A12_CUCMA  (Q00257), 1A12_CUCPE  (Q00379), 1A12_SOLLC  (P18485), 
1A13_SOLLC  (Q42881), 1A14_ARATH  (Q43309), 1A14_SOLLC  (P29535), 
1A15_ARATH  (Q37001), 1A16_ARATH  (Q9SAR0), 1A17_ARATH  (Q9STR4), 
1A18_ARATH  (Q9T065), 1A19_ARATH  (Q9M2Y8), 1A1C_DIACA  (P27486), 
1A1C_MALDO  (P37821), 1A1C_SOYBN  (P31531), 1A1C_TOBAC  (Q07262), 
1A1C_VIGRR  (Q01912), 1A1L1_TAKRU (Q9W698), AAT1_ARATH  (P46643), 
AAT1_BACSU  (P53001), AAT1_MEDSA  (P28011), AAT1_METJA  (Q60317), 
AAT2_ARATH  (P46645), AAT2_BACSU  (P39643), AAT2_METJA  (Q58097), 
AAT3_ARATH  (P46644), AAT3_BACSU  (O07587), AAT4_ARATH  (P46646), 
AAT5_ARATH  (P46248), AATA_RHIME  (Q02635), AATB_RHIME  (P58350), 
AATB_RHIML  (Q06191), AATC_BOVIN  (P33097), AATC_CAEEL  (Q22067), 
AATC_CHICK  (P00504), AATC_DAUCA  (P28734), AATC_HORSE  (P08906), 
AATC_HUMAN  (P17174), AATC_MACFA  (Q4R5L1), AATC_MOUSE  (P05201), 
AATC_ORYSJ  (P37833), AATC_PANTR  (A5A6K8), AATC_PIG    (P00503), 
AATC_PONAB  (Q5R691), AATC_RAT    (P13221), AATC_RHIME  (O87320), 
AATC_YEAST  (P23542), AATM_BOVIN  (P12344), AATM_CHICK  (P00508), 
AATM_DICDI  (Q55F21), AATM_HORSE  (P08907), AATM_HUMAN  (P00505), 
AATM_LUPAN  (P26563), AATM_MACFA  (Q4R559), AATM_MOUSE  (P05202), 
AATM_PIG    (P00506), AATM_PONAB  (Q5REB0), AATM_RABIT  (P12345), 
AATM_RAT    (P00507), AATM_SCHPO  (O94320), AATM_XENTR  (Q28F67), 
AATM_YEAST  (Q01802), AAT_BACY2   (P23034), AAT_ECOLI   (P00509), 
AAT_GEOSE   (Q59228), AAT_HAEIN   (P44425), AAT_PSEAE   (P72173), 
AAT_PYRAB   (Q9V0L2), AAT_PYRHO   (O58489), AAT_RHILP   (O86459), 
AAT_RICBR   (Q1RGV0), AAT_RICCN   (Q92JE7), AAT_RICFE   (Q4UND3), 
AAT_RICPR   (Q9ZE56), AAT_RICTY   (Q68XV9), AAT_SALTI   (Q56114), 
AAT_SALTY   (P58661), AAT_STRVG   (Q60013), AAT_SULAC   (Q4J8X2), 
AAT_SULSO   (P14909), AAT_SULTO   (Q972A2), AAT_SYNY3   (Q55128), 
AAT_THEAQ   (O33822), AAT_THEKO   (O93744), AAT_THEMA   (Q9X0Y2), 
AAT_THET8   (Q56232), ARAT2_THELN (H3ZPU1), ARUH_PSEAE  (Q9HUI9), 
ASDA_COMTE  (Q93QX0), ASDP_PSESP  (Q53IZ1), ATTY_BOVIN  (Q58CZ9), 
ATTY_DICDI  (Q54K95), ATTY_HUMAN  (P17735), ATTY_MOUSE  (Q8QZR1), 
ATTY_RAT    (P04694), ATTY_RHIME  (Q02636), ATTY_TRYCR  (P33447), 
BNA3_YEAST  (P47039), COBC_PSEAE  (Q9I468), COBC_PSEDE  (P21633), 
COBDQ_LEPIN (Q8EXQ7), COBD_SALTI  (Q8Z8H8), COBD_SALTY  (P97084), 
DAPAT_AQUAE (O66630), DAPAT_AZOPC (B6YRL2), DAPAT_CARHZ (Q3AC10), 
DAPAT_CHLMU (Q9PK04), DAPAT_CHLPN (Q9Z856), DAPAT_CHLT2 (B0B7W0), 
DAPAT_CHLTA (Q3KLW3), DAPAT_CHLTB (B0BC25), DAPAT_CHLTR (O84395), 
DAPAT_CLOPH (A9KJ19), DAPAT_DEHM1 (Q3Z8H5), DAPAT_DEHMB (A5FRC5), 
DAPAT_DEHMC (Q3ZXC8), DAPAT_DESAG (Q30ZX9), DAPAT_DESAP (B1I544), 
DAPAT_DESVH (Q72BI1), DAPAT_DESVM (B8DJJ6), DAPAT_DESVV (A1VDD3), 
DAPAT_GLOVI (Q7NDX4), DAPAT_HALOH (B8CX89), DAPAT_METJA (Q58786), 
DAPAT_METMP (Q6LX26), DAPAT_MOOTA (Q2RK33), DAPAT_NATTJ (B2A250), 
DAPAT_SYNFM (A0LEA5), DAPT2_ANAVT (Q3MDN5), DAPT2_NOSS1 (Q8YP73), 
HIS82_HAEIN (Q57004), PATA_BACSU  (P16524), PAT_ARATH   (Q9SIE1), 
PAT_PETHY   (E9L7A5), PAT_PINPS   (Q5F4K8), PHHC_PSEAE  (P43336), 
TYRB_ECOLI  (P04693), TYRB_KLEPN  (O85746), TYRB_SALTY  (P74861), 
Y2231_MYCTO (P9WQ88), Y2231_MYCTU (P9WQ89), Y2256_MYCBO (P63501), 
YUGH_BACSU  (Q795M6)
» More

UniProtKB/Swiss-Prot
False negative sequences
102 sequences

1A110_ARATH (Q9LQ10), 1A1L1_BOVIN (Q5E9H2), 1A1L1_HUMAN (Q96QU6), 
1A1L1_MOUSE (A2AIG8), 1A1L2_HUMAN (Q4AC99), 1A1L2_MOUSE (Q3UX83), 
AATC2_BOVIN (Q2T9S8), AATC2_HUMAN (Q8NHS2), AATC2_MOUSE (Q7TSV6), 
AATC_DICDI  (Q54SF7), AATC_SCHPO  (O42652), AAT_AQUAE   (O67781), 
AAT_MYCBO   (P63499), AAT_MYCTO   (P9WQ90), AAT_MYCTU   (P9WQ91), 
ALAA_ECOL6  (P0A960), ALAA_ECOLI  (P0A959), ALAA_HAEIN  (P71348), 
ALAA_SHIFL  (P0A961), ALAC_ECOLI  (P77434), ARAT1_THELN (H3ZPL1), 
DAPAT_ACAM1 (B0CDH5), DAPAT_ARATH (Q93ZN9), DAPAT_BACFN (Q5LC03), 
DAPAT_BACFR (Q64SY6), DAPAT_BACTN (Q8AAB8), DAPAT_BACV8 (A6L7E4), 
DAPAT_CHLAB (Q5L6M0), DAPAT_CHLCV (Q824A4), DAPAT_CHLFF (Q253K9), 
DAPAT_CLOTH (A3DK17), DAPAT_CYAA5 (B1WSG7), DAPAT_CYAP4 (B8HJY4), 
DAPAT_CYAP7 (B7KL61), DAPAT_CYAP8 (B7JVL5), DAPAT_DESAD (C6BUK3), 
DAPAT_DESAH (C0QFJ4), DAPAT_DESDA (B8IZX8), DAPAT_DESHD (Q18T09), 
DAPAT_DESHY (Q24S01), DAPAT_DESOH (A8ZXV5), DAPAT_DESPS (Q6AL81), 
DAPAT_EUBE2 (C4Z4Y1), DAPAT_EUBR3 (C4ZG66), DAPAT_GEOBB (B5EGX2), 
DAPAT_GEODF (B9M384), DAPAT_GEOLS (B3E933), DAPAT_GEOMG (Q39Z65), 
DAPAT_GEOSL (Q74GT3), DAPAT_GEOSM (C6E9Q7), DAPAT_GEOUR (A5GD93), 
DAPAT_HELMI (B0TA38), DAPAT_LAWIP (Q1MR87), DAPAT_LEPBA (B0SEH8), 
DAPAT_LEPBJ (Q04UL5), DAPAT_LEPBL (Q04YV8), DAPAT_LEPBP (B0SMK7), 
DAPAT_LEPIC (Q72NJ3), DAPAT_LEPIN (Q8F814), DAPAT_METS3 (A5UN82), 
DAPAT_METST (Q2NFU1), DAPAT_METTH (O26158), DAPAT_MICAN (B0JUM0), 
DAPAT_NOSP7 (B2J2U3), DAPAT_PARD8 (A6L8U2), DAPAT_PARUW (Q6MDE0), 
DAPAT_PELCD (Q3A1U5), DAPAT_PELPD (A1ATI6), DAPAT_PROM0 (A3PEY9), 
DAPAT_PROM1 (A2C4T7), DAPAT_PROM3 (A2CC97), DAPAT_PROM4 (A9BCJ1), 
DAPAT_PROM5 (A2BYM6), DAPAT_PROM9 (Q318P3), DAPAT_PROMA (Q7VA14), 
DAPAT_PROMM (Q7V4Z3), DAPAT_PROMP (Q7UZZ3), DAPAT_PROMS (A2BT75), 
DAPAT_PROMT (Q46IX2), DAPAT_SYNE7 (Q31PY6), DAPAT_SYNJA (Q2JS04), 
DAPAT_SYNJB (Q2JLL9), DAPAT_SYNP2 (B1XKF6), DAPAT_SYNP6 (Q5N492), 
DAPAT_SYNPW (A5GIN1), DAPAT_SYNPX (Q7U4C3), DAPAT_SYNR3 (A5GW23), 
DAPAT_SYNS3 (Q0ID68), DAPAT_SYNS9 (Q3AW44), DAPAT_SYNSC (Q3AMU5), 
DAPAT_SYNY3 (Q55828), DAPAT_THEEB (Q8DH57), DAPAT_TRIEI (Q10ZC3), 
DAPT1_ANAVT (Q3MAL4), DAPT1_NOSS1 (Q8YM38), LYSN_THET2  (Q72LL6), 
NAATA_HORVU (Q9ST02), NAATB_HORVU (Q9ST03), TYRB_PARDE  (P95468), 
Y104_SULSO  (P95957), Y6286_MYCS2 (A0R5R7), YBDL_ECOLI  (P77806)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
6 sequences

AAT1_PSEMZ  (P85906), AAT2_PSEMZ  (P85951), AATC_RABIT  (P12343), 
AATM_CATRO  (P85310), AAT_METEX   (P52069), AAT_STRGR   (P36692)
» More

UniProtKB/Swiss-Prot
False positive sequences
19 sequences

BAME1_ARATH (O49545), BAME2_ARATH (Q9M2Z1), CLP1_NEUCR  (Q7SAB7), 
DRB3_ORYSJ  (Q0DJA3), DRB7_ORYSJ  (Q0IV63), DRB8_ORYSJ  (Q0IQN6), 
HIS81_MANSM (Q65S79), HIS82_ARCFU (O28255), MILK1_BOVIN (E1BBG2), 
MILK1_HUMAN (Q8N3F8), MILK1_MOUSE (Q8BGT6), MILK1_RAT   (D3ZQL6), 
RBKTP_CUPNH (Q0K3R9), RBKTP_CUPTR (B2AIF3), TDCD_YERE8  (A1JIM9), 
TRXR3_MOUSE (Q99MD6), WDR46_CANFA (Q5TJE7), WDR46_HUMAN (O15213), 
Y1341_ARATH (C0LGF5)
» More

PDB
[Detailed view]
108 PDB

1AAM; 1AAT; 1AAW; 1AHE; 1AHF; 1AHG; 1AHX; 1AHY; 1AJS; 1AMA; 1AMQ; 1AMR; 1AMS; 1ARG; 1ARH; 1ARI; 1ARS; 1ART; 1ASA; 1ASB; 1ASC; 1ASD; 1ASE; 1ASF; 1ASG; 1ASL; 1ASM; 1ASN; 1B4X; 1B5O; 1B5P; 1B8G; 1BKG; 1C9C; 1CQ6; 1CQ7; 1CQ8; 1CZC; 1CZE; 1G4V; 1G4X; 1G7W; 1G7X; 1GC3; 1GC4; 1GCK; 1IAX; 1IAY; 1IVR; 1IX6; 1IX7; 1IX8; 1LC5; 1LC7; 1LC8; 1LKC; 1M4N; 1M7Y; 1MAP; 1MAQ; 1O4S; 1OXO; 1OXP; 1QIR; 1QIS; 1QIT; 1SPA; 1TAR; 1TAS; 1TAT; 1X28; 1X29; 1X2A; 1YAA; 1YNU; 1YOO; 2CST; 2D5Y; 2D61; 2D63; 2D64; 2D65; 2D66; 2D7Y; 2D7Z; 2ZY2; 2ZY3; 2ZY4; 2ZY5; 3AAT; 3ASA; 3DYD; 3FSL; 3II0; 3PD6; 3PDB; 3PIU; 3QPG; 3TAT; 3ZZJ; 3ZZK; 4A00; 5BJ3; 5BJ4; 5EAA; 7AAT; 8AAT; 9AAT
» More

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