Entry: PS00105

General information about the entry

Entry name [info] AA_TRANSFER_CLASS_1
Accession [info] PS00105
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00098

Name and characterization of the entry

Description [info] Aminotransferases class-I pyridoxal-phosphate attachment site.
Pattern [info]
[GS]-[LIVMFYTAC]-[GSTA]-K-x(2)-[GSALVN]-[LIVMFA]-x-[GNAR]-{V}-R-[LIVMA]-
[GA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 170 in 170 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 19 in 19 different sequences
Number of false negative sequences 103
Number of 'partial' sequences 6
Precision (true positives / (true positives + false positives)) 88.82 %
Recall (true positives / (true positives + false negatives)) 59.45 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
151 sequences

1A111_ARATH (Q9S9U6    ), 1A112_ARATH (Q8GYY0    ), 1A11_ARATH  (Q06429    ), 
1A11_CUCMA  (P23599    ), 1A11_CUCPE  (P23279    ), 1A11_ORYSI  (A2XLL2    ), 
1A11_ORYSJ  (Q10DK7    ), 1A11_PRUMU  (Q9MB95    ), 1A12_ARATH  (Q06402    ), 
1A12_CUCMA  (Q00257    ), 1A12_CUCPE  (Q00379    ), 1A12_SOLLC  (P18485    ), 
1A13_SOLLC  (Q42881    ), 1A14_ARATH  (Q43309    ), 1A14_SOLLC  (P29535    ), 
1A15_ARATH  (Q37001    ), 1A16_ARATH  (Q9SAR0    ), 1A17_ARATH  (Q9STR4    ), 
1A18_ARATH  (Q9T065    ), 1A19_ARATH  (Q9M2Y8    ), 1A1C_DIACA  (P27486    ), 
1A1C_MALDO  (P37821    ), 1A1C_SOYBN  (P31531    ), 1A1C_TOBAC  (Q07262    ), 
1A1C_VIGRR  (Q01912    ), 1A1L1_TAKRU (Q9W698    ), AAT1_ARATH  (P46643    ), 
AAT1_BACSU  (P53001    ), AAT1_MEDSA  (P28011    ), AAT2_ARATH  (P46645    ), 
AAT3_ARATH  (P46644    ), AAT3_BACSU  (O07587    ), AAT4_ARATH  (P46646    ), 
AAT5_ARATH  (P46248    ), AATA_RHIME  (Q02635    ), AATB_RHIME  (P58350    ), 
AATB_RHIML  (Q06191    ), AATC_BOVIN  (P33097    ), AATC_CAEEL  (Q22067    ), 
AATC_CHICK  (P00504    ), AATC_DAUCA  (P28734    ), AATC_HORSE  (P08906    ), 
AATC_HUMAN  (P17174    ), AATC_MACFA  (Q4R5L1    ), AATC_MOUSE  (P05201    ), 
AATC_ORYSJ  (P37833    ), AATC_PANTR  (A5A6K8    ), AATC_PIG    (P00503    ), 
AATC_PONAB  (Q5R691    ), AATC_RAT    (P13221    ), AATC_RHIME  (O87320    ), 
AATC_YEAST  (P23542    ), AATM_BOVIN  (P12344    ), AATM_CHICK  (P00508    ), 
AATM_DICDI  (Q55F21    ), AATM_HORSE  (P08907    ), AATM_HUMAN  (P00505    ), 
AATM_LUPAN  (P26563    ), AATM_MACFA  (Q4R559    ), AATM_MOUSE  (P05202    ), 
AATM_PIG    (P00506    ), AATM_PONAB  (Q5REB0    ), AATM_RABIT  (P12345    ), 
AATM_RAT    (P00507    ), AATM_SCHPO  (O94320    ), AATM_XENTR  (Q28F67    ), 
AATM_YEAST  (Q01802    ), AAT_BACY2   (P23034    ), AAT_ECOLI   (P00509    ), 
AAT_GEOSE   (Q59228    ), AAT_HAEIN   (P44425    ), AAT_METJA   (Q60317    ), 
AAT_PSEAE   (P72173    ), AAT_PYRAB   (Q9V0L2    ), AAT_PYRHO   (O58489    ), 
AAT_RHILP   (O86459    ), AAT_RICBR   (Q1RGV0    ), AAT_RICCN   (Q92JE7    ), 
AAT_RICFE   (Q4UND3    ), AAT_RICPR   (Q9ZE56    ), AAT_RICTY   (Q68XV9    ), 
AAT_SALTI   (Q56114    ), AAT_SALTY   (P58661    ), AAT_STRVG   (Q60013    ), 
AAT_SULAC   (Q4J8X2    ), AAT_SULSO   (P14909    ), AAT_SULTO   (Q972A2    ), 
AAT_SYNY3   (Q55128    ), AAT_THEAQ   (O33822    ), AAT_THEKO   (O93744    ), 
AAT_THEMA   (Q9X0Y2    ), AAT_THET8   (Q56232    ), ARAT2_THELN (H3ZPU1    ), 
ARUH_PSEAE  (Q9HUI9    ), ASDA_COMTE  (Q93QX0    ), ASDP_PSESP  (Q53IZ1    ), 
ATTY_BOVIN  (Q58CZ9    ), ATTY_DICDI  (Q54K95    ), ATTY_HUMAN  (P17735    ), 
ATTY_MOUSE  (Q8QZR1    ), ATTY_RAT    (P04694    ), ATTY_RHIME  (Q02636    ), 
ATTY_TRYCR  (P33447    ), BACF_BACSU  (P39643    ), BNA3_YEAST  (P47039    ), 
COBC_PSEAE  (Q9I468    ), COBC_PSEDE  (P21633    ), COBDQ_LEPIN (Q8EXQ7    ), 
COBD_SALTI  (Q8Z8H8    ), COBD_SALTY  (P97084    ), DAPAT_AQUAE (O66630    ), 
DAPAT_AZOPC (B6YRL2    ), DAPAT_CARHZ (Q3AC10    ), DAPAT_CHLMU (Q9PK04    ), 
DAPAT_CHLPN (Q9Z856    ), DAPAT_CHLT2 (B0B7W0    ), DAPAT_CHLTA (Q3KLW3    ), 
DAPAT_CHLTB (B0BC25    ), DAPAT_CHLTR (O84395    ), DAPAT_CLOPH (A9KJ19    ), 
DAPAT_DEHM1 (Q3Z8H5    ), DAPAT_DEHMB (A5FRC5    ), DAPAT_DEHMC (Q3ZXC8    ), 
DAPAT_DESAG (Q30ZX9    ), DAPAT_DESAP (B1I544    ), DAPAT_DESVH (Q72BI1    ), 
DAPAT_DESVM (B8DJJ6    ), DAPAT_DESVV (A1VDD3    ), DAPAT_GLOVI (Q7NDX4    ), 
DAPAT_HALOH (B8CX89    ), DAPAT_METJA (Q58786    ), DAPAT_METMP (Q6LX26    ), 
DAPAT_MOOTA (Q2RK33    ), DAPAT_NATTJ (B2A250    ), DAPAT_SYNFM (A0LEA5    ), 
DAPT2_ANAVT (Q3MDN5    ), DAPT2_NOSS1 (Q8YP73    ), HIS82_HAEIN (Q57004    ), 
MFNC_METJA  (Q58097    ), PATA_BACSU  (P16524    ), PAT_ARATH   (Q9SIE1    ), 
PAT_PETHY   (E9L7A5    ), PAT_PINPS   (Q5F4K8    ), PHHC_PSEAE  (P43336    ), 
TYRB_ECOLI  (P04693    ), TYRB_KLEPN  (O85746    ), TYRB_SALTY  (P74861    ), 
Y2231_MYCTO (P9WQ88    ), Y2231_MYCTU (P9WQ89    ), Y2256_MYCBO (P63501    ), 
YUGH_BACSU  (Q795M6    )
» more

UniProtKB/Swiss-Prot
False negative sequences
103 sequences

1A110_ARATH (Q9LQ10    ), 1A1L1_BOVIN (Q5E9H2    ), 1A1L1_HUMAN (Q96QU6    ), 
1A1L1_MOUSE (A2AIG8    ), 1A1L2_HUMAN (Q4AC99    ), 1A1L2_MOUSE (Q3UX83    ), 
AATC2_BOVIN (Q2T9S8    ), AATC2_HUMAN (Q8NHS2    ), AATC2_MOUSE (Q7TSV6    ), 
AATC_DICDI  (Q54SF7    ), AATC_SCHPO  (O42652    ), AAT_AQUAE   (O67781    ), 
AAT_MYCBO   (P63499    ), AAT_MYCTO   (P9WQ90    ), AAT_MYCTU   (P9WQ91    ), 
ALAA_ECOL6  (P0A960    ), ALAA_ECOLI  (P0A959    ), ALAA_HAEIN  (P71348    ), 
ALAA_SHIFL  (P0A961    ), ALAC_ECOLI  (P77434    ), ARAT1_THELN (H3ZPL1    ), 
DAPAT_ACAM1 (B0CDH5    ), DAPAT_AGARV (C4ZG66    ), DAPAT_ARATH (Q93ZN9    ), 
DAPAT_BACFN (Q5LC03    ), DAPAT_BACFR (Q64SY6    ), DAPAT_BACTN (Q8AAB8    ), 
DAPAT_BACV8 (A6L7E4    ), DAPAT_CHLAB (Q5L6M0    ), DAPAT_CHLCV (Q824A4    ), 
DAPAT_CHLFF (Q253K9    ), DAPAT_CLOTH (A3DK17    ), DAPAT_CYAA5 (B1WSG7    ), 
DAPAT_CYAP4 (B8HJY4    ), DAPAT_CYAP7 (B7KL61    ), DAPAT_CYAP8 (B7JVL5    ), 
DAPAT_DESAD (C6BUK3    ), DAPAT_DESAH (C0QFJ4    ), DAPAT_DESDA (B8IZX8    ), 
DAPAT_DESHD (Q18T09    ), DAPAT_DESHY (Q24S01    ), DAPAT_DESOH (A8ZXV5    ), 
DAPAT_DESPS (Q6AL81    ), DAPAT_EUBE2 (C4Z4Y1    ), DAPAT_GEOBB (B5EGX2    ), 
DAPAT_GEODF (B9M384    ), DAPAT_GEOLS (B3E933    ), DAPAT_GEOMG (Q39Z65    ), 
DAPAT_GEOSL (Q74GT3    ), DAPAT_GEOSM (C6E9Q7    ), DAPAT_GEOUR (A5GD93    ), 
DAPAT_HELMI (B0TA38    ), DAPAT_LAWIP (Q1MR87    ), DAPAT_LEPBA (B0SEH8    ), 
DAPAT_LEPBJ (Q04UL5    ), DAPAT_LEPBL (Q04YV8    ), DAPAT_LEPBP (B0SMK7    ), 
DAPAT_LEPIC (Q72NJ3    ), DAPAT_LEPIN (Q8F814    ), DAPAT_METS3 (A5UN82    ), 
DAPAT_METST (Q2NFU1    ), DAPAT_METTH (O26158    ), DAPAT_MICAN (B0JUM0    ), 
DAPAT_NOSP7 (B2J2U3    ), DAPAT_PARD8 (A6L8U2    ), DAPAT_PARUW (Q6MDE0    ), 
DAPAT_PELCD (Q3A1U5    ), DAPAT_PELPD (A1ATI6    ), DAPAT_PROM0 (A3PEY9    ), 
DAPAT_PROM1 (A2C4T7    ), DAPAT_PROM3 (A2CC97    ), DAPAT_PROM4 (A9BCJ1    ), 
DAPAT_PROM5 (A2BYM6    ), DAPAT_PROM9 (Q318P3    ), DAPAT_PROMA (Q7VA14    ), 
DAPAT_PROMM (Q7V4Z3    ), DAPAT_PROMP (Q7UZZ3    ), DAPAT_PROMS (A2BT75    ), 
DAPAT_PROMT (Q46IX2    ), DAPAT_SYNE7 (Q31PY6    ), DAPAT_SYNJA (Q2JS04    ), 
DAPAT_SYNJB (Q2JLL9    ), DAPAT_SYNP2 (B1XKF6    ), DAPAT_SYNP6 (Q5N492    ), 
DAPAT_SYNPW (A5GIN1    ), DAPAT_SYNPX (Q7U4C3    ), DAPAT_SYNR3 (A5GW23    ), 
DAPAT_SYNS3 (Q0ID68    ), DAPAT_SYNS9 (Q3AW44    ), DAPAT_SYNSC (Q3AMU5    ), 
DAPAT_SYNY3 (Q55828    ), DAPAT_THEEB (Q8DH57    ), DAPAT_TRIEI (Q10ZC3    ), 
DAPT1_ANAVT (Q3MAL4    ), DAPT1_NOSS1 (Q8YM38    ), HPGT_AMYOR  (O52815    ), 
LYSN_THET2  (Q72LL6    ), NAATA_HORVU (Q9ST02    ), NAATB_HORVU (Q9ST03    ), 
TYRB_PARDE  (P95468    ), Y104_SULSO  (P95957    ), Y6286_MYCS2 (A0R5R7    ), 
YBDL_ECOLI  (P77806    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
6 sequences

AAT1_PSEMZ  (P85906    ), AAT2_PSEMZ  (P85951    ), AATC_RABIT  (P12343    ), 
AATM_CATRO  (P85310    ), AAT_METEX   (P52069    ), AAT_STRGR   (P36692    )
» more

UniProtKB/Swiss-Prot
False positive sequences
19 sequences

BAME1_ARATH (O49545    ), BAME2_ARATH (Q9M2Z1    ), CLP1_NEUCR  (Q7SAB7    ), 
DRB3_ORYSJ  (Q0DJA3    ), DRB7_ORYSJ  (Q0IV63    ), DRB8_ORYSJ  (Q0IQN6    ), 
HIS81_MANSM (Q65S79    ), HIS82_ARCFU (O28255    ), MILK1_BOVIN (E1BBG2    ), 
MILK1_HUMAN (Q8N3F8    ), MILK1_MOUSE (Q8BGT6    ), MILK1_RAT   (D3ZQL6    ), 
RBKTP_CUPNH (Q0K3R9    ), RBKTP_CUPTR (B2AIF3    ), TDCD_YERE8  (A1JIM9    ), 
TRXR3_MOUSE (Q99MD6    ), WDR46_CANLF (Q5TJE7    ), WDR46_HUMAN (O15213    ), 
Y1341_ARATH (C0LGF5    )
» more

PDB
[Detailed view]
110 PDB

1AAM; 1AAT; 1AAW; 1AHE; 1AHF; 1AHG; 1AHX; 1AHY; 1AJS; 1AMA; 1AMQ; 1AMR; 1AMS; 1ARG; 1ARH; 1ARI; 1ARS; 1ART; 1ASA; 1ASB; 1ASC; 1ASD; 1ASE; 1ASF; 1ASG; 1ASL; 1ASM; 1ASN; 1B4X; 1B5O; 1B5P; 1B8G; 1BKG; 1C9C; 1CQ6; 1CQ7; 1CQ8; 1CZC; 1CZE; 1G4V; 1G4X; 1G7W; 1G7X; 1GC3; 1GC4; 1GCK; 1IAX; 1IAY; 1IVR; 1IX6; 1IX7; 1IX8; 1LC5; 1LC7; 1LC8; 1LKC; 1M4N; 1M7Y; 1MAP; 1MAQ; 1O4S; 1OXO; 1OXP; 1QIR; 1QIS; 1QIT; 1SPA; 1TAR; 1TAS; 1TAT; 1X28; 1X29; 1X2A; 1YAA; 1YNU; 1YOO; 2CST; 2D5Y; 2D61; 2D63; 2D64; 2D65; 2D66; 2D7Y; 2D7Z; 2ZY2; 2ZY3; 2ZY4; 2ZY5; 3AAT; 3ASA; 3DYD; 3FSL; 3II0; 3PD6; 3PDB; 3PIU; 3QPG; 3TAT; 3WZF; 3ZZJ; 3ZZK; 4A00; 5AX8; 5BJ3; 5BJ4; 5EAA; 7AAT; 8AAT; 9AAT
» more

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