Entry: PS00105

General information about the entry

Entry name [info] AA_TRANSFER_CLASS_1
Accession [info] PS00105
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00098

Name and characterization of the entry

Description [info] Aminotransferases class-I pyridoxal-phosphate attachment site.
Pattern [info]
[GS]-[LIVMFYTAC]-[GSTA]-K-x(2)-[GSALVN]-[LIVMFA]-x-[GNAR]-{V}-R-[LIVMA]-
[GA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 170 in 170 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 19 in 19 different sequences
Number of false negative sequences 103
Number of 'partial' sequences 6
Precision (true positives / (true positives + false positives)) 88.82 %
Recall (true positives / (true positives + false negatives)) 59.45 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
151 sequences

1A111_ARATH (Q9S9U6), 1A112_ARATH (Q8GYY0), 1A11_ARATH  (Q06429), 
1A11_CUCMA  (P23599), 1A11_CUCPE  (P23279), 1A11_ORYSI  (A2XLL2), 
1A11_ORYSJ  (Q10DK7), 1A11_PRUMU  (Q9MB95), 1A12_ARATH  (Q06402), 
1A12_CUCMA  (Q00257), 1A12_CUCPE  (Q00379), 1A12_SOLLC  (P18485), 
1A13_SOLLC  (Q42881), 1A14_ARATH  (Q43309), 1A14_SOLLC  (P29535), 
1A15_ARATH  (Q37001), 1A16_ARATH  (Q9SAR0), 1A17_ARATH  (Q9STR4), 
1A18_ARATH  (Q9T065), 1A19_ARATH  (Q9M2Y8), 1A1C_DIACA  (P27486), 
1A1C_MALDO  (P37821), 1A1C_SOYBN  (P31531), 1A1C_TOBAC  (Q07262), 
1A1C_VIGRR  (Q01912), 1A1L1_TAKRU (Q9W698), AAT1_ARATH  (P46643), 
AAT1_BACSU  (P53001), AAT1_MEDSA  (P28011), AAT1_METJA  (Q60317), 
AAT2_ARATH  (P46645), AAT2_BACSU  (P39643), AAT2_METJA  (Q58097), 
AAT3_ARATH  (P46644), AAT3_BACSU  (O07587), AAT4_ARATH  (P46646), 
AAT5_ARATH  (P46248), AATA_RHIME  (Q02635), AATB_RHIME  (P58350), 
AATB_RHIML  (Q06191), AATC_BOVIN  (P33097), AATC_CAEEL  (Q22067), 
AATC_CHICK  (P00504), AATC_DAUCA  (P28734), AATC_HORSE  (P08906), 
AATC_HUMAN  (P17174), AATC_MACFA  (Q4R5L1), AATC_MOUSE  (P05201), 
AATC_ORYSJ  (P37833), AATC_PANTR  (A5A6K8), AATC_PIG    (P00503), 
AATC_PONAB  (Q5R691), AATC_RAT    (P13221), AATC_RHIME  (O87320), 
AATC_YEAST  (P23542), AATM_BOVIN  (P12344), AATM_CHICK  (P00508), 
AATM_DICDI  (Q55F21), AATM_HORSE  (P08907), AATM_HUMAN  (P00505), 
AATM_LUPAN  (P26563), AATM_MACFA  (Q4R559), AATM_MOUSE  (P05202), 
AATM_PIG    (P00506), AATM_PONAB  (Q5REB0), AATM_RABIT  (P12345), 
AATM_RAT    (P00507), AATM_SCHPO  (O94320), AATM_XENTR  (Q28F67), 
AATM_YEAST  (Q01802), AAT_BACY2   (P23034), AAT_ECOLI   (P00509), 
AAT_GEOSE   (Q59228), AAT_HAEIN   (P44425), AAT_PSEAE   (P72173), 
AAT_PYRAB   (Q9V0L2), AAT_PYRHO   (O58489), AAT_RHILP   (O86459), 
AAT_RICBR   (Q1RGV0), AAT_RICCN   (Q92JE7), AAT_RICFE   (Q4UND3), 
AAT_RICPR   (Q9ZE56), AAT_RICTY   (Q68XV9), AAT_SALTI   (Q56114), 
AAT_SALTY   (P58661), AAT_STRVG   (Q60013), AAT_SULAC   (Q4J8X2), 
AAT_SULSO   (P14909), AAT_SULTO   (Q972A2), AAT_SYNY3   (Q55128), 
AAT_THEAQ   (O33822), AAT_THEKO   (O93744), AAT_THEMA   (Q9X0Y2), 
AAT_THET8   (Q56232), ARAT2_THELN (H3ZPU1), ARUH_PSEAE  (Q9HUI9), 
ASDA_COMTE  (Q93QX0), ASDP_PSESP  (Q53IZ1), ATTY_BOVIN  (Q58CZ9), 
ATTY_DICDI  (Q54K95), ATTY_HUMAN  (P17735), ATTY_MOUSE  (Q8QZR1), 
ATTY_RAT    (P04694), ATTY_RHIME  (Q02636), ATTY_TRYCR  (P33447), 
BNA3_YEAST  (P47039), COBC_PSEAE  (Q9I468), COBC_PSEDE  (P21633), 
COBDQ_LEPIN (Q8EXQ7), COBD_SALTI  (Q8Z8H8), COBD_SALTY  (P97084), 
DAPAT_AQUAE (O66630), DAPAT_AZOPC (B6YRL2), DAPAT_CARHZ (Q3AC10), 
DAPAT_CHLMU (Q9PK04), DAPAT_CHLPN (Q9Z856), DAPAT_CHLT2 (B0B7W0), 
DAPAT_CHLTA (Q3KLW3), DAPAT_CHLTB (B0BC25), DAPAT_CHLTR (O84395), 
DAPAT_CLOPH (A9KJ19), DAPAT_DEHM1 (Q3Z8H5), DAPAT_DEHMB (A5FRC5), 
DAPAT_DEHMC (Q3ZXC8), DAPAT_DESAG (Q30ZX9), DAPAT_DESAP (B1I544), 
DAPAT_DESVH (Q72BI1), DAPAT_DESVM (B8DJJ6), DAPAT_DESVV (A1VDD3), 
DAPAT_GLOVI (Q7NDX4), DAPAT_HALOH (B8CX89), DAPAT_METJA (Q58786), 
DAPAT_METMP (Q6LX26), DAPAT_MOOTA (Q2RK33), DAPAT_NATTJ (B2A250), 
DAPAT_SYNFM (A0LEA5), DAPT2_ANAVT (Q3MDN5), DAPT2_NOSS1 (Q8YP73), 
HIS82_HAEIN (Q57004), PATA_BACSU  (P16524), PAT_ARATH   (Q9SIE1), 
PAT_PETHY   (E9L7A5), PAT_PINPS   (Q5F4K8), PHHC_PSEAE  (P43336), 
TYRB_ECOLI  (P04693), TYRB_KLEPN  (O85746), TYRB_SALTY  (P74861), 
Y2231_MYCTO (P9WQ88), Y2231_MYCTU (P9WQ89), Y2256_MYCBO (P63501), 
YUGH_BACSU  (Q795M6)
» More

UniProtKB/Swiss-Prot
False negative sequences
103 sequences

1A110_ARATH (Q9LQ10), 1A1L1_BOVIN (Q5E9H2), 1A1L1_HUMAN (Q96QU6), 
1A1L1_MOUSE (A2AIG8), 1A1L2_HUMAN (Q4AC99), 1A1L2_MOUSE (Q3UX83), 
AATC2_BOVIN (Q2T9S8), AATC2_HUMAN (Q8NHS2), AATC2_MOUSE (Q7TSV6), 
AATC_DICDI  (Q54SF7), AATC_SCHPO  (O42652), AAT_AQUAE   (O67781), 
AAT_MYCBO   (P63499), AAT_MYCTO   (P9WQ90), AAT_MYCTU   (P9WQ91), 
ALAA_ECOL6  (P0A960), ALAA_ECOLI  (P0A959), ALAA_HAEIN  (P71348), 
ALAA_SHIFL  (P0A961), ALAC_ECOLI  (P77434), ARAT1_THELN (H3ZPL1), 
DAPAT_ACAM1 (B0CDH5), DAPAT_ARATH (Q93ZN9), DAPAT_BACFN (Q5LC03), 
DAPAT_BACFR (Q64SY6), DAPAT_BACTN (Q8AAB8), DAPAT_BACV8 (A6L7E4), 
DAPAT_CHLAB (Q5L6M0), DAPAT_CHLCV (Q824A4), DAPAT_CHLFF (Q253K9), 
DAPAT_CLOTH (A3DK17), DAPAT_CYAA5 (B1WSG7), DAPAT_CYAP4 (B8HJY4), 
DAPAT_CYAP7 (B7KL61), DAPAT_CYAP8 (B7JVL5), DAPAT_DESAD (C6BUK3), 
DAPAT_DESAH (C0QFJ4), DAPAT_DESDA (B8IZX8), DAPAT_DESHD (Q18T09), 
DAPAT_DESHY (Q24S01), DAPAT_DESOH (A8ZXV5), DAPAT_DESPS (Q6AL81), 
DAPAT_EUBE2 (C4Z4Y1), DAPAT_EUBR3 (C4ZG66), DAPAT_GEOBB (B5EGX2), 
DAPAT_GEODF (B9M384), DAPAT_GEOLS (B3E933), DAPAT_GEOMG (Q39Z65), 
DAPAT_GEOSL (Q74GT3), DAPAT_GEOSM (C6E9Q7), DAPAT_GEOUR (A5GD93), 
DAPAT_HELMI (B0TA38), DAPAT_LAWIP (Q1MR87), DAPAT_LEPBA (B0SEH8), 
DAPAT_LEPBJ (Q04UL5), DAPAT_LEPBL (Q04YV8), DAPAT_LEPBP (B0SMK7), 
DAPAT_LEPIC (Q72NJ3), DAPAT_LEPIN (Q8F814), DAPAT_METS3 (A5UN82), 
DAPAT_METST (Q2NFU1), DAPAT_METTH (O26158), DAPAT_MICAN (B0JUM0), 
DAPAT_NOSP7 (B2J2U3), DAPAT_PARD8 (A6L8U2), DAPAT_PARUW (Q6MDE0), 
DAPAT_PELCD (Q3A1U5), DAPAT_PELPD (A1ATI6), DAPAT_PROM0 (A3PEY9), 
DAPAT_PROM1 (A2C4T7), DAPAT_PROM3 (A2CC97), DAPAT_PROM4 (A9BCJ1), 
DAPAT_PROM5 (A2BYM6), DAPAT_PROM9 (Q318P3), DAPAT_PROMA (Q7VA14), 
DAPAT_PROMM (Q7V4Z3), DAPAT_PROMP (Q7UZZ3), DAPAT_PROMS (A2BT75), 
DAPAT_PROMT (Q46IX2), DAPAT_SYNE7 (Q31PY6), DAPAT_SYNJA (Q2JS04), 
DAPAT_SYNJB (Q2JLL9), DAPAT_SYNP2 (B1XKF6), DAPAT_SYNP6 (Q5N492), 
DAPAT_SYNPW (A5GIN1), DAPAT_SYNPX (Q7U4C3), DAPAT_SYNR3 (A5GW23), 
DAPAT_SYNS3 (Q0ID68), DAPAT_SYNS9 (Q3AW44), DAPAT_SYNSC (Q3AMU5), 
DAPAT_SYNY3 (Q55828), DAPAT_THEEB (Q8DH57), DAPAT_TRIEI (Q10ZC3), 
DAPT1_ANAVT (Q3MAL4), DAPT1_NOSS1 (Q8YM38), HPGT_AMYOR  (O52815), 
LYSN_THET2  (Q72LL6), NAATA_HORVU (Q9ST02), NAATB_HORVU (Q9ST03), 
TYRB_PARDE  (P95468), Y104_SULSO  (P95957), Y6286_MYCS2 (A0R5R7), 
YBDL_ECOLI  (P77806)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
6 sequences

AAT1_PSEMZ  (P85906), AAT2_PSEMZ  (P85951), AATC_RABIT  (P12343), 
AATM_CATRO  (P85310), AAT_METEX   (P52069), AAT_STRGR   (P36692)
» More

UniProtKB/Swiss-Prot
False positive sequences
19 sequences

BAME1_ARATH (O49545), BAME2_ARATH (Q9M2Z1), CLP1_NEUCR  (Q7SAB7), 
DRB3_ORYSJ  (Q0DJA3), DRB7_ORYSJ  (Q0IV63), DRB8_ORYSJ  (Q0IQN6), 
HIS81_MANSM (Q65S79), HIS82_ARCFU (O28255), MILK1_BOVIN (E1BBG2), 
MILK1_HUMAN (Q8N3F8), MILK1_MOUSE (Q8BGT6), MILK1_RAT   (D3ZQL6), 
RBKTP_CUPNH (Q0K3R9), RBKTP_CUPTR (B2AIF3), TDCD_YERE8  (A1JIM9), 
TRXR3_MOUSE (Q99MD6), WDR46_CANFA (Q5TJE7), WDR46_HUMAN (O15213), 
Y1341_ARATH (C0LGF5)
» More

PDB
[Detailed view]
108 PDB

1AAM; 1AAT; 1AAW; 1AHE; 1AHF; 1AHG; 1AHX; 1AHY; 1AJS; 1AMA; 1AMQ; 1AMR; 1AMS; 1ARG; 1ARH; 1ARI; 1ARS; 1ART; 1ASA; 1ASB; 1ASC; 1ASD; 1ASE; 1ASF; 1ASG; 1ASL; 1ASM; 1ASN; 1B4X; 1B5O; 1B5P; 1B8G; 1BKG; 1C9C; 1CQ6; 1CQ7; 1CQ8; 1CZC; 1CZE; 1G4V; 1G4X; 1G7W; 1G7X; 1GC3; 1GC4; 1GCK; 1IAX; 1IAY; 1IVR; 1IX6; 1IX7; 1IX8; 1LC5; 1LC7; 1LC8; 1LKC; 1M4N; 1M7Y; 1MAP; 1MAQ; 1O4S; 1OXO; 1OXP; 1QIR; 1QIS; 1QIT; 1SPA; 1TAR; 1TAS; 1TAT; 1X28; 1X29; 1X2A; 1YAA; 1YNU; 1YOO; 2CST; 2D5Y; 2D61; 2D63; 2D64; 2D65; 2D66; 2D7Y; 2D7Z; 2ZY2; 2ZY3; 2ZY4; 2ZY5; 3AAT; 3ASA; 3DYD; 3FSL; 3II0; 3PD6; 3PDB; 3PIU; 3QPG; 3TAT; 3ZZJ; 3ZZK; 4A00; 5BJ3; 5BJ4; 5EAA; 7AAT; 8AAT; 9AAT
» More

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