Entry: PS00165
General information about the entry
Entry nameDEHYDRATASE_SER_THR
Accession numberPS00165
Entry typePATTERN
DateAPR-1990 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00149
Name and characterization of the entry
DescriptionSerine/threonine dehydratases pyridoxal-phosphate attachment site.
Pattern[DESH]-x(4,5)-[STVG]-{EVKD}-[AS]-[FYI]-K-[DLIFSA]-[RLVMF]-[GA]-[LIVMGA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 210 hits in 210 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 183 hits in 183 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 27 hits in 27 different sequences
  • Number of known missed hits: 19
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 87.14 %
  • Recall (true hits / (true hits + false negatives)): 90.59 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 7,pyridoxal_phosphate
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
SDH1_YEAST  (P0CF21), SDH1_YEASX  (P0CF23), SDHD1_ECOL5 (Q0TF95), 
SDHD1_ECOUT (Q1R901), SDHD2_ECOL5 (Q0T953), SDHD2_ECOUT (Q1R2Q6), 
SDHD_ACIAD  (Q6FDC1), SDHD_ACIB5  (B7I8P7), SDHD_ACIBC  (B2HVC6), 
SDHD_ACIBT  (A3M3B1), SDHD_AERHH  (A0KI76), SDHD_AERS4  (A4SPX2), 
SDHD_BACAC  (C3L7G5), SDHD_BACAH  (A0RCF8), SDHD_BACAN  (Q81S85), 
SDHD_BACC1  (Q73AC5), SDHD_BACC2  (B7IR88), SDHD_BACC3  (C1EPF1), 
SDHD_BACC4  (B7HID8), SDHD_BACC7  (B7HMG6), SDHD_BACCR  (Q81F73), 
SDHD_BACCZ  (Q63D23), SDHD_BACHD  (Q9KC12), SDHD_BACHK  (Q6HKG3), 
SDHD_BACSK  (Q5WGL6), SDHD_BACSU  (P54555), SDHD_BACWK  (A9VPH9), 
SDHD_CHRVO  (Q7NUP9), SDHD_CITK8  (A8ACI7), SDHD_COLP3  (Q47V69), 
SDHD_DESHY  (Q24WR0), SDHD_ECO24  (A7ZPH2), SDHD_ECO45  (B7MH26), 
SDHD_ECO55  (B7LBR9), SDHD_ECO57  (Q8XCK5), SDHD_ECO5E  (B5YYW7), 
SDHD_ECO81  (B7MY25), SDHD_ECO8A  (B7M6N5), SDHD_ECOBW  (C4ZVQ3), 
SDHD_ECODH  (B1X9N9), SDHD_ECOHS  (A8A2M0), SDHD_ECOK1  (A1ADP3), 
SDHD_ECOL6  (Q8FFF4), SDHD_ECOLC  (B1IX96), SDHD_ECOLI  (P00926), 
SDHD_ECOLU  (B7N5W6), SDHD_ECOSE  (B6I6R7), SDHD_ESCF3  (B7LK20), 
SDHD_GEOKA  (Q75TC9), SDHD_GEOSE  (Q75TH5), SDHD_HAES1  (Q0I5V1), 
SDHD_HAES2  (B0UWV3), SDHD_LACF3  (B2GBP8), SDHD_LACPL  (Q88TY1), 
SDHD_OENOB  (Q04G28), SDHD_PEDPA  (Q03DF6), SDHD_PHOLL  (Q7N5H9), 
SDHD_PHOPR  (Q6LHF5), SDHD_PSEA7  (A6V271), SDHD_PSEA8  (B7V2Y0), 
SDHD_PSEAB  (Q02QJ1), SDHD_PSEAE  (Q9HYN9), SDHD_PSEMY  (A4XXF3), 
SDHD_PSEP1  (A5W4Y8), SDHD_PSEPG  (B0KGK3), SDHD_SALA4  (B5EY75), 
SDHD_SALAR  (A9MKH2), SDHD_SALCH  (Q57I32), SDHD_SALDC  (B5FMC1), 
SDHD_SALEP  (B5QU31), SDHD_SALG2  (B5RG23), SDHD_SALHS  (B4TA53), 
SDHD_SALNS  (B4SY68), SDHD_SALPA  (Q5PKR3), SDHD_SALPB  (A9MWI4), 
SDHD_SALPC  (C0Q241), SDHD_SALPK  (B5BII6), SDHD_SALSV  (B4TMW9), 
SDHD_SALTI  (Q8Z2L4), SDHD_SALTY  (Q8ZL08), SDHD_SERP5  (A8GES6), 
SDHD_SHIBS  (Q31YA5), SDHD_SHIDS  (Q32DH8), SDHD_SHIF8  (Q0T2D1), 
SDHD_SHIFL  (Q83MK8), SDHD_SHISS  (Q3YZG4), SDHD_STAS1  (Q4A041), 
SDHD_VIBC3  (A5F0M6), SDHD_VIBCH  (Q9KL72), SDHD_VIBCM  (C3LWD9), 
SDHD_VIBHB  (A7MYG2), SDHD_VIBPA  (Q87QA2), SDHD_YERE8  (A1JJW5), 
SDHL_BOVIN  (Q0VCW4), SDHL_DICDI  (Q86B06), SDHL_HUMAN  (P20132), 
SDHL_MOUSE  (Q8VBT2), SDHL_RAT    (P09367), SDHL_YEAS1  (B3LU13), 
SDHL_YEAS6  (B5VKE8), SDHL_YEAS7  (A6ZVB1), SDHL_YEAS8  (C8ZAU6), 
SDSL_HUMAN  (Q96GA7), SRR_BOVIN   (A0JNI4), SRR_HUMAN   (Q9GZT4), 
SRR_MOUSE   (Q9QZX7), SRR_RAT     (Q76EQ0), SRY1_YEAST  (P36007), 
STDH_YEAST  (P25379), THD1_ARATH  (Q9ZSS6), THD1_BACHD  (Q9KC63), 
THD1_BACSU  (P37946), THD1_BURM1  (P53607), THD1_CORGL  (Q04513), 
THD1_ECOLI  (P04968), THD1_HAEIN  (P46493), THD1_LACLA  (Q02145), 
THD1_MYCBO  (P66898), THD1_MYCLE  (Q9X7F1), THD1_MYCTU  (P66897), 
THD1_PASMU  (Q9CKJ2), THD1_SALTY  (P20506), THD1_SOLLC  (P25306), 
THD1_STAA3  (Q2FF63), THD1_STAA8  (Q2FWJ9), THD1_STAAB  (Q2YUE8), 
THD1_STAAC  (Q5HEE0), THD1_STAAM  (Q99SJ1), THD1_STAAN  (Q7A4H2), 
THD1_STAAR  (Q3V7T5), THD1_STAAS  (Q3V7T4), THD1_STAAW  (Q8NVI8), 
THD1_STAEQ  (Q5HMF5), THD1_STAES  (Q8CNK9), THD1_STAHJ  (Q4L7U4), 
THD1_STAS1  (Q49Z16), THD2_ECO57  (P0AGF8), THD2_ECOL6  (P0AGF7), 
THD2_ECOLI  (P0AGF6), THD2_SALTY  (P11954), THD2_SHIFL  (P0AGF9), 
THD2_STAA3  (Q2FH01), THD2_STAA8  (Q2FYJ3), THD2_STAAB  (Q2YY67), 
THD2_STAAC  (Q5HFY5), THD2_STAAM  (Q99U50), THD2_STAAN  (Q7A5L8), 
THD2_STAAR  (Q6GGX0), THD2_STAAS  (Q6G9C4), THD2_STAAW  (Q8NWQ4), 
THDH_BLAAD  (O42615), THDH_SCHPO  (O94634), THDH_YEAST  (P00927), 
THNS2_DANRE (Q2YDP8), THNS2_XENLA (Q5XH07), THRC1_ARATH (Q9S7B5), 
THRC2_ARATH (Q9SSP5), THRC_ASHGO  (Q00063), THRC_BACHD  (Q9K7E3), 
THRC_BACSL  (P09123), THRC_BACSU  (P04990), THRC_BUCAI  (P57289), 
THRC_BUCAP  (Q8K9V1), THRC_BUCBP  (Q89AR5), THRC_CORGL  (P23669), 
THRC_ECOLI  (P00934), THRC_HAEIN  (P44503), THRC_HELPJ  (Q9ZMX5), 
THRC_HELPY  (O24924), THRC_METAC  (Q8TQD4), THRC_METGL  (P37145), 
THRC_METJA  (Q58860), THRC_MYCBO  (P66903), THRC_MYCLE  (P45837), 
THRC_MYCS2  (A0R220), THRC_MYCTU  (P66902), THRC_PSEAE  (P29363), 
THRC_SCHPO  (Q42598), THRC_SERMA  (P27735), THRC_SOLTU  (Q9MT28), 
THRC_SYNY3  (P74193), THRC_YEAST  (P16120), Y4TJ_RHISN  (P55664)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
SDHD_ACIAC  (A1TPW5), SDHD_ACIET  (B9MIR7), SDHD_ACISJ  (A1W838), 
SDHD_BURP0  (A3P975), SDHD_BURP1  (Q3JJ76), SDHD_BURP6  (A3NNQ0), 
SDHD_BURPS  (Q63IF8), SDHD_BURS3  (Q396Y3), SDHD_BURTA  (Q2T8Q2), 
SDHD_CARHZ  (Q3AFZ5), SDHD_CUPPJ  (Q46X58), SDHD_FUSNN  (Q8RFX6), 
SDHD_HAHCH  (Q2SHX7), SDHD_POLNA  (A1VWK8), SDHD_RHIE6  (B3PYT5), 
SDHD_RHILW  (B5ZNC1), SDHD_SINMW  (A6UB95), SRR_SCHPO   (O59791), 
THD1_CICAR  (Q39469)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
THD1_SOLTU  (P31212)
False positive hits (sequences which do not belong to the set under consideration):
ACTN3_BOVIN (Q0III9), ACTN3_HUMAN (Q08043), ACTN3_MOUSE (O88990), 
ALKD_PSEPU  (P00885), AROE_PYRAE  (Q8ZW89), BFPB_ECO11  (Q9S142), 
BFPB_ECO27  (Q47068), CY551_ALLVD (P80549), CY551_PSEAE (P00099), 
CYSM_CAMJE  (P71128), DHOM_HELPJ  (Q9ZL20), DHOM_HELPY  (P56429), 
DIP2A_MOUSE (Q8BWT5), DNLJ_BEII9  (B2IGH4), FEOB_LEPIC  (Q72SI0), 
FEOB_LEPIN  (Q8F332), GCST_PSESM  (Q88AS0), HNRLL_HUMAN (Q8WVV9), 
HNRLL_MOUSE (Q921F4), KAS1_STRVN  (P16540), PALLD_HUMAN (Q8WX93), 
RL15_AGRT5  (Q8UE36), RS20_CUPPJ  (Q46XK7), RS20_RALME  (Q1LJ99), 
RSMG_CLOB8  (A6M3M3), SYLC_DICDI  (Q54N83), YDHG_SCHPO  (Q92361)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1KL7; 1P5J; 1PWE; 1PWH; 1RSQ; 1TDJ; 1VB3; 2D1F; 2RKB; 3HMK; 3L6B; 3L6C; 3R0X; 3R0Z;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission


If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or