Entry: PS00186

General information about the entry
Entry name IPNS_2
Accession number PS00186
Entry type PATTERN
Date APR-1990 (CREATED); DEC-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00165
Name and characterization of the entry
DescriptionIsopenicillin N synthase signature 2.
Pattern [LIVM](2)-x-C-G-[STA]-x(2)-[STAG]-x(2)-T-x-[DNG].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 16 hits in 16 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 12 hits in 12 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 75.00 %
  • Recall (true hits / (true hits + false negatives)): 85.71 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 3,active_site(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CEFE_STRC2  (P18548), EXPA_ACRCH  (P11935), IPNS_ACRCH  (P05189), 
IPNS_EMENI  (P05326), IPNS_FLASS  (P16020), IPNS_LYSLA  (Q48739), 
IPNS_PENCH  (P08703), IPNS_STRC2  (P10621), IPNS_STRCT  (Q53932), 
IPNS_STRGR  (Q54243), IPNS_STRJU  (P18286), IPNS_STRMI  (P12438)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CEFE_NOCLA  (Q03047), IPNS_NOCLA  (P27744)
False positive hits (sequences which do not belong to the set under consideration):
PGRP1_BOSIN (B5T255), PGRP1_BOVIN (Q8SPP7), Y3471_BRAJA (Q89PK9), 
Y4391_ARATH (Q9T020)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1BK0; 1BLZ; 1DCS; 1E5H; 1E5I; 1HB1; 1HB2; 1HB3; 1HB4; 1HJF; 1HJG; 1IPS; 1OBN; 1OC1; 1ODM; 1ODN; 1QIQ; 1QJE; 1QJF; 1RXF; 1RXG; 1UNB; 1UO9; 1UOB; 1UOF; 1UOG; 1UZW; 1W03; 1W04; 1W05; 1W06; 1W28; 1W2A; 1W2N; 1W2O; 1W3V; 1W3X; 2BJS; 2BU9; 2IVI; 2IVJ; 2JB4; 2JB8; 2VAU; 2VBB; 2VBD; 2VBP; 2VCM; 2VE1; 2WO7; 2Y60; 2Y6F; 2Y86; 3ZKU;

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