Entry: PS00186

Forthcoming changes to the profile format
General information about the entry

Entry name [info] IPNS_2
Accession [info] PS00186
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-1990 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00165

Name and characterization of the entry

Description [info] Isopenicillin N synthase signature 2.
Pattern [info]
[LIVM](2)-x-C-G-[STA]-x(2)-[STAG]-x(2)-T-x-[DNG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 16 in 16 different sequences
Number of true positive hits 12 in 12 different sequences
Number of 'unknown' hits
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 75.00 %
Recall (true positives / (true positives + false negatives)) 85.71 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site(?) at position 3
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
12 sequences

CEFE_STRC2  (P18548), EXPA_ACRCH  (P11935), IPNS_ACRCH  (P05189), 
IPNS_EMENI  (P05326), IPNS_FLASS  (P16020), IPNS_LYSLA  (Q48739), 
IPNS_PENCH  (P08703), IPNS_STRC2  (P10621), IPNS_STRCT  (Q53932), 
IPNS_STRGR  (Q54243), IPNS_STRJU  (P18286), IPNS_STRMI  (P12438)
» More

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

CEFE_AMYLA  (Q03047), IPNS_AMYLA  (P27744)

		
UniProtKB/Swiss-Prot
False positive sequences
4 sequences

PGRP1_BOSIN (B5T255), PGRP1_BOVIN (Q8SPP7), Y3471_BRADU (Q89PK9), 
Y4391_ARATH (Q9T020)
» More

PDB
[Detailed view]
56 PDB

1BK0; 1BLZ; 1DCS; 1E5H; 1E5I; 1HB1; 1HB2; 1HB3; 1HB4; 1HJF; 1HJG; 1IPS; 1OBN; 1OC1; 1ODM; 1ODN; 1QIQ; 1QJE; 1QJF; 1RXF; 1RXG; 1UNB; 1UO9; 1UOB; 1UOF; 1UOG; 1UZW; 1W03; 1W04; 1W05; 1W06; 1W28; 1W2A; 1W2N; 1W2O; 1W3V; 1W3X; 2BJS; 2BU9; 2IVI; 2IVJ; 2JB4; 2JB8; 2VAU; 2VBB; 2VBD; 2VBP; 2VCM; 2VE1; 2WO7; 2Y60; 2Y6F; 3ZKU; 3ZKY; 3ZOI; 4BB3
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission