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Entry: PS00275

General information about the entry

Entry name [info] SHIGA_RICIN
Accession [info] PS00275
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00248

Name and characterization of the entry

Description [info] Shiga/ricin ribosomal inactivating toxins active site signature.
Pattern [info]
[LIVMA]-x-[LIVMSTA](2)-x-E-[SAGV]-[STAL]-R-[FY]-[RKNQST]-x-[LIVM]-[EQS]-
x(2)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 54 in 54 different sequences
Number of true positive hits 54 in 54 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 12
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.52 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Site [info] active_site at position 8
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
54 sequences

ABRA_ABRPR  (P11140    ), ABRB_ABRPR  (Q06077    ), ABRC_ABRPR  (P28590    ), 
ABRD_ABRPR  (Q06076    ), AGGL_ABRPR  (Q9M6E9    ), AGGL_RICCO  (P06750    ), 
ALB3_MAIZE  (P10593    ), JI60_HORVU  (Q00531    ), NIGB_SAMNI  (P33183    ), 
RICI_RICCO  (P02879    ), RIP0_DIACA  (P24476    ), RIP1_BRYDI  (P33185    ), 
RIP1_CUCFI  (Q9FRX4    ), RIP1_GYNPE  (Q5F0I3    ), RIP1_HORVU  (P22244    ), 
RIP1_MOMCH  (P16094    ), RIP1_PHYAM  (P10297    ), RIP1_SAMNI  (P93543    ), 
RIP2_BRYDI  (P98184    ), RIP2_HORVU  (P04399    ), RIP2_MOMBA  (P29339    ), 
RIP2_PHYAM  (Q40772    ), RIP2_PHYDI  (P34967    ), RIP2_SAPOF  (P27559    ), 
RIP3_MAIZE  (P25891    ), RIP3_MOMCH  (P24817    ), RIP3_SAPOF  (P27560    ), 
RIP5_SAPOF  (Q41389    ), RIP6_SAPOF  (P20656    ), RIP7_SAPOF  (Q41391    ), 
RIP9_MAIZE  (P25892    ), RIPA_LUFAE  (Q00465    ), RIPA_PHYAM  (Q03464    ), 
RIPB_LUFAE  (P22851    ), RIPD2_PHYDI (P85208    ), RIPG_SURMU  (P33186    ), 
RIPL1_PHYDI (P84853    ), RIPL2_PHYDI (P84854    ), RIPLY_SILCH (P85101    ), 
RIPP_MIRJA  (P21326    ), RIPS_PHYAM  (P23339    ), RIPS_TRIKI  (P24478    ), 
RIPT_TRIKI  (P09989    ), RIPX_MAIZE  (P28522    ), RIP_CUCMO   (P84531    ), 
RIP_LUFAC   (P84530    ), SNAIB_SAMNI (Q41358    ), SNAIF_SAMNI (O22415    ), 
STXA_BP788  (Q779K4    ), STXA_BP933  (P09385    ), STXA_BPH19  (P08026    ), 
STXA_BPH30  (P10149    ), STXA_SHIDS  (Q32GM1    ), STXA_SHIDY  (Q9FBI2    )
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

ML1_VISAL   (P81446    ), ML2_VISAL   (Q6H266    ), ML3_VISAL   (P82683    ), 
RIP1_TRIAN  (P56626    ), RIP4_PHYHE  (Q6EH50    ), RIP9_SAPOF  (Q7M1Z2    ), 
RIP_DRIMA   (P84786    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
12 sequences

ARALA_ARAEL (P83572    ), LECA_IRIHO  (P36230    ), RIP1_SAPOF  (P98185    ), 
RIP2_DIACA  (P24477    ), RIP2_TRIKI  (P23029    ), RIP3_SURMU  (P24475    ), 
RIP4_SAPOF  (P27561    ), RIPD1_PHYDI (P86144    ), RIPK_TRIKI  (P16093    ), 
RIPS_MOMCO  (P20655    ), RIPX_CUCPE  (P80750    ), RIP_SIRGR   (P83323    )
» more

PDB
[Detailed view]
113 PDB

1ABR; 1AHA; 1AHB; 1AHC; 1APA; 1BR5; 1BR6; 1BRY; 1CF5; 1D6A; 1D8V; 1DM0; 1F8Q; 1GIK; 1GIS; 1GIU; 1IFS; 1IFT; 1IFU; 1IL3; 1IL4; 1IL5; 1IL9; 1J1M; 1J1Q; 1J1R; 1J1S; 1J4G; 1LP8; 1LPC; 1LPD; 1MOM; 1MRG; 1MRH; 1MRI; 1MRJ; 1MRK; 1NIO; 1PAF; 1PAG; 1QCG; 1QCI; 1QCJ; 1QD2; 1QI7; 1R4P; 1R4Q; 1RL0; 1RTC; 1RZO; 1TCS; 1UQ4; 1UQ5; 2AAI; 2G5X; 2GA4; 2JDL; 2JJR; 2K6H; 2OQA; 2P8N; 2PJO; 2PQG; 2PQI; 2PQJ; 2Q3N; 2QES; 2QET; 2R2X; 2R3D; 2VS6; 2Z4U; 2Z53; 2ZR1; 3BJG; 3BWH; 3EJ5; 3H5K; 3HIO; 3KTZ; 3KU0; 3LC9; 3LE7; 3MK9; 3PX8; 3PX9; 3RTI; 3RTJ; 3SRP; 4ESI; 4FBA; 4FBB; 4FBC; 4FBH; 4HUO; 4HUP; 4HV3; 4HV7; 4IMV; 4KUC; 4LGP; 4LGR; 4LGS; 4LHJ; 4LHQ; 4MX1; 4MX5; 4Q2V; 4YP2; 4Z9K; 5CF9; 5DDZ; 5E1H
» more

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