Entry: PS00275

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General information about the entry

Entry name [info] SHIGA_RICIN
Accession [info] PS00275
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00248

Name and characterization of the entry

Description [info] Shiga/ricin ribosomal inactivating toxins active site signature.
Pattern [info]
[LIVMA]-x-[LIVMSTA](2)-x-E-[SAGV]-[STAL]-R-[FY]-[RKNQST]-x-[LIVM]-[EQS]-
x(2)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 52 in 52 different sequences
Number of true positive hits 52 in 52 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 7
Number of 'partial' sequences 12
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.14 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Site [info] active_site at position 8
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
52 sequences

ABRA_ABRPR  (P11140), ABRB_ABRPR  (Q06077), ABRC_ABRPR  (P28590), 
ABRD_ABRPR  (Q06076), AGGL_ABRPR  (Q9M6E9), AGGL_RICCO  (P06750), 
ALB3_MAIZE  (P10593), JI60_HORVU  (Q00531), NIGB_SAMNI  (P33183), 
RICI_RICCO  (P02879), RIP0_DIACA  (P24476), RIP1_BRYDI  (P33185), 
RIP1_CUCFI  (Q9FRX4), RIP1_GYNPE  (Q5F0I3), RIP1_HORVU  (P22244), 
RIP1_MOMCH  (P16094), RIP1_PHYAM  (P10297), RIP1_SAMNI  (P93543), 
RIP2_BRYDI  (P98184), RIP2_HORVU  (P04399), RIP2_MOMBA  (P29339), 
RIP2_PHYAM  (Q40772), RIP2_PHYDI  (P34967), RIP2_SAPOF  (P27559), 
RIP3_MAIZE  (P25891), RIP3_MOMCH  (P24817), RIP3_SAPOF  (P27560), 
RIP5_SAPOF  (Q41389), RIP6_SAPOF  (P20656), RIP7_SAPOF  (Q41391), 
RIP9_MAIZE  (P25892), RIPA_LUFAE  (Q00465), RIPA_PHYAM  (Q03464), 
RIPB_LUFAE  (P22851), RIPD2_PHYDI (P85208), RIPG_SURMU  (P33186), 
RIPL1_PHYDI (P84853), RIPL2_PHYDI (P84854), RIPLY_SILCH (P85101), 
RIPP_MIRJA  (P21326), RIPS_PHYAM  (P23339), RIPS_TRIKI  (P24478), 
RIPT_TRIKI  (P09989), RIPX_MAIZE  (P28522), RIP_CUCMO   (P84531), 
RIP_LUFAC   (P84530), STXA_BP788  (Q779K4), STXA_BP933  (P09385), 
STXA_BPH19  (P08026), STXA_BPH30  (P10149), STXA_SHIDS  (Q32GM1), 
STXA_SHIDY  (Q9FBI2)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

ML1_VISAL   (P81446), ML2_VISAL   (Q6H266), ML3_VISAL   (P82683), 
RIP1_TRIAN  (P56626), RIP4_PHYHE  (Q6EH50), RIP9_SAPOF  (Q7M1Z2), 
RIP_DRIMA   (P84786)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
12 sequences

ARALA_ARAEL (P83572), LECA_IRIHO  (P36230), RIP1_SAPOF  (P98185), 
RIP2_DIACA  (P24477), RIP2_TRIKI  (P23029), RIP3_SURMU  (P24475), 
RIP4_SAPOF  (P27561), RIPD1_PHYDI (P86144), RIPK_TRIKI  (P16093), 
RIPS_MOMCO  (P20655), RIPX_CUCPE  (P80750), RIP_SIRGR   (P83323)
» More

PDB
[Detailed view]
102 PDB

1ABR; 1AHA; 1AHB; 1AHC; 1APA; 1BR5; 1BR6; 1BRY; 1CF5; 1D6A; 1D8V; 1DM0; 1F8Q; 1GIK; 1GIS; 1GIU; 1IFS; 1IFT; 1IFU; 1IL3; 1IL4; 1IL5; 1IL9; 1J1M; 1J1Q; 1J1R; 1J1S; 1J4G; 1LP8; 1LPC; 1LPD; 1MOM; 1MRG; 1MRH; 1MRI; 1MRJ; 1MRK; 1NIO; 1PAF; 1PAG; 1QCG; 1QCI; 1QCJ; 1QD2; 1QI7; 1R4P; 1R4Q; 1RL0; 1RTC; 1RZO; 1TCS; 1UQ4; 1UQ5; 2AAI; 2G5X; 2GA4; 2JDL; 2JJR; 2K6H; 2OQA; 2P8N; 2PJO; 2PQG; 2PQI; 2PQJ; 2Q3N; 2QES; 2QET; 2R2X; 2R3D; 2VS6; 2Z4U; 2Z53; 2ZR1; 3BJG; 3BWH; 3EJ5; 3H5K; 3HIO; 3KTZ; 3KU0; 3LC9; 3LE7; 3MK9; 3PX8; 3PX9; 3RTI; 3RTJ; 3SRP; 4ESI; 4FBA; 4FBB; 4FBC; 4FBH; 4HUO; 4HUP; 4HV3; 4HV7; 4IMV; 4KUC; 4MX1; 4MX5
» More

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