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Entry: PS00326
General information about the entry
Entry nameTROPOMYOSIN
Accession numberPS00326
Entry typePATTERN
DateAPR-1990 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00290
Name and characterization of the entry
DescriptionTropomyosins signature.
PatternL-K-[EAD]-A-E-x-R-A-[ET].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 72 hits in 72 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 72 hits in 72 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 86.75 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
TPM1_BIOGL  (P42636), TPM1_BOMMO  (Q1HPU0), TPM1_BOVIN  (Q5KR49), 
TPM1_CAEEL  (Q22866), TPM1_CHICK  (P04268), TPM1_COTJA  (P58773), 
TPM1_DANRE  (P13104), TPM1_DROME  (P06754), TPM1_HUMAN  (P09493), 
TPM1_LIZAU  (P84335), TPM1_MOUSE  (P58771), TPM1_PIG    (P42639), 
TPM1_RABIT  (P58772), TPM1_RANTE  (P13105), TPM1_RAT    (P04692), 
TPM1_SCHMA  (P42637), TPM1_XENLA  (Q01173), TPM2_BIOGL  (P43689), 
TPM2_BOMMO  (Q1HPQ0), TPM2_BOVIN  (Q5KR48), TPM2_CHICK  (P19352), 
TPM2_DROME  (P09491), TPM2_HUMAN  (P07951), TPM2_MOUSE  (P58774), 
TPM2_RABIT  (P58776), TPM2_RAT    (P58775), TPM3L_HUMAN (A6NL28), 
TPM3_BOVIN  (Q5KR47), TPM3_CAEEL  (Q27249), TPM3_HUMAN  (P06753), 
TPM3_MOUSE  (P21107), TPM3_PIG    (A1XQV4), TPM3_RAT    (Q63610), 
TPM4_DROME  (P49455), TPM4_HORSE  (P02561), TPM4_HUMAN  (P67936), 
TPM4_MOUSE  (Q6IRU2), TPM4_PIG    (P67937), TPM4_RAT    (P09495), 
TPMM_TRICO  (P15846), TPM_ACAVI   (O01673), TPM_ANISI   (Q9NAS5), 
TPM_BLAGE   (Q9NG56), TPM_BRABE   (Q9NDS0), TPM_CAEBR   (Q60UW4), 
TPM_CHAFE   (Q9N2R3), TPM_CHIKI   (O96764), TPM_CHIOP   (A2V735), 
TPM_CHLNI   (O02389), TPM_DERFA   (Q23939), TPM_DERPT   (O18416), 
TPM_HALDV   (Q9GZ71), TPM_HALRU   (Q25145), TPM_HOMAM   (O44119), 
TPM_LEPDS   (Q9NFZ4), TPM_LEPSA   (Q8T380), TPM_LOCMI   (P31816), 
TPM_METEN   (Q25456), TPM_MIMNO   (Q9GZ69), TPM_MYTED   (Q25457), 
TPM_MYTGA   (P91958), TPM_ONCVO   (Q25632), TPM_PANBO   (P86704), 
TPM_PANST   (O61379), TPM_PENMO   (A1KYZ2), TPM_PERAM   (Q9UB83), 
TPM_PERFU   (Q8T6L5), TPM_PERVI   (Q9GZ70), TPM_SCHHA   (Q26503), 
TPM_SCHJA   (Q26519), TPM_TRIPS   (Q8WR63), TPM_TRISP   (Q95VA8)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TPM1_CIOIN  (Q07068), TPM1_HYDVU  (P39921), TPM1_PODCA  (P41114), 
TPM2_PODCA  (Q9U5M4), TPM2_SCHMA  (P42638), TPM_BOOMI   (O97162), 
TPM_CLOSI   (Q23758), TPM_ECHGR   (O16127), TPM_ECHMU   (Q95PU1), 
TPM_HAELO   (Q8IT89), TPM_HELAS   (O97192)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
TPM_TURCO   (Q7M3Y8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1C1G; 2D3E; 2EFR; 2EFS; 2TMA; 2W49; 2W4U;

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