Entry: PS00388

General information about the entry

Entry name [info] PROTEASOME_ALPHA_1
Accession [info] PS00388
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); JUL-2013 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00326

Name and characterization of the entry

Description [info] Proteasome alpha-type subunits signature.
Pattern [info]
[FYNAGS]-x(4)-[STNLV]-x-[FYW]-S-[PDS]-x(0,1)-G-[RKHDS]-x(2)-Q-[LIVA]-
[DENR]-[YH]-[GSAD]-x(2)-[GSAG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 173 in 173 different sequences
Number of true positive hits 173 in 173 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 64
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
173 sequences

PSA1A_ARATH (P34066), PSA1B_ARATH (O23712), PSA1_BOVIN  (Q3T0X5), 
PSA1_CAEEL  (O44156), PSA1_CHICK  (O42265), PSA1_DICDI  (Q27562), 
PSA1_DROME  (P12881), PSA1_HALMA  (Q5V2X8), PSA1_HALVD  (Q9V2V6), 
PSA1_HUMAN  (P25786), PSA1_MACFA  (Q4R3H2), PSA1_MOUSE  (Q9R1P4), 
PSA1_ORYSJ  (P52428), PSA1_PONAB  (Q5REN2), PSA1_RAT    (P18420), 
PSA1_SCHPO  (O94517), PSA1_TRYBB  (Q9GU37), PSA1_TRYBR  (O96788), 
PSA1_TRYCR  (P92188), PSA1_YEAST  (P21243), PSA2A_ARATH (O23708), 
PSA2B_ARATH (Q8L4A7), PSA2_BOVIN  (Q3T0Y5), PSA2_CAEEL  (Q27488), 
PSA2_CARAU  (O73672), PSA2_DICDI  (Q54DM7), PSA2_DROME  (P40301), 
PSA2_HALMA  (Q5V1D4), PSA2_HALVD  (Q9V2V5), PSA2_HUMAN  (P25787), 
PSA2_MOUSE  (P49722), PSA2_NEUCR  (Q8X077), PSA2_ORYSI  (A2YVR7), 
PSA2_ORYSJ  (Q10KF0), PSA2_RAT    (P17220), PSA2_SCHPO  (O94579), 
PSA2_TRYBB  (Q9U793), PSA2_XENLA  (P24495), PSA2_YEAST  (P23639), 
PSA3_ACACA  (P90513), PSA3_ARATH  (O23715), PSA3_BOVIN  (Q58DU5), 
PSA3_CAEEL  (Q09583), PSA3_DICDI  (Q27563), PSA3_DROME  (Q9V5C6), 
PSA3_HUMAN  (P25788), PSA3_MOUSE  (O70435), PSA3_ORYSJ  (Q9LSU0), 
PSA3_RAT    (P18422), PSA3_SCHPO  (Q09682), PSA3_SPIOL  (O24362), 
PSA3_YEAST  (P23638), PSA4A_ARATH (O81148), PSA4A_ORYSI (A2Y9X7), 
PSA4A_ORYSJ (P0C1G8), PSA4B_ARATH (F4JJE5), PSA4B_ORYSI (P0C8Y9), 
PSA4B_ORYSJ (Q5VRG3), PSA4L_DROME (Q9VA12), PSA4_BOVIN  (Q3ZCK9), 
PSA4_CAEEL  (Q9N599), PSA4_DICDI  (P34119), PSA4_DROME  (P18053), 
PSA4_HUMAN  (P25789), PSA4_MACFA  (Q4R932), PSA4_MOUSE  (Q9R1P0), 
PSA4_PETHY  (O82530), PSA4_RAT    (P21670), PSA4_SCHPO  (Q10329), 
PSA4_SPIOL  (P52427), PSA4_YEAST  (P40303), PSA5A_ARATH (O81149), 
PSA5B_ARATH (Q42134), PSA5_BOVIN  (Q5E987), PSA5_CAEEL  (Q95008), 
PSA5_DICDI  (Q55G04), PSA5_DROME  (Q95083), PSA5_ENCCU  (Q8SRU3), 
PSA5_ENTHI  (Q94561), PSA5_HUMAN  (P28066), PSA5_MOUSE  (Q9Z2U1), 
PSA5_ORYSJ  (Q9LSU1), PSA5_RAT    (P34064), PSA5_SCHPO  (Q9UT97), 
PSA5_SOYBN  (Q9M4T8), PSA5_TRYBB  (Q9XZG5), PSA5_YEAST  (P32379), 
PSA6A_ARATH (O81146), PSA6B_ARATH (O81147), PSA6_BOVIN  (Q2YDE4), 
PSA6_CAEEL  (O17586), PSA6_DROME  (Q9XZJ4), PSA6_HUMAN  (P60900), 
PSA6_MOUSE  (Q9QUM9), PSA6_ORYSJ  (Q9LSU3), PSA6_RAT    (P60901), 
PSA6_SCHPO  (O14250), PSA6_SOYBN  (O48551), PSA6_TOBAC  (Q9XG77), 
PSA6_YEAST  (P40302), PSA71_DROME (P22769), PSA71_DROVI (O16811), 
PSA72_DROME (Q24178), PSA73_DROME (Q27575), PSA73_DROVI (O16812), 
PSA7A_ARATH (P30186), PSA7A_ORYSI (A2YXU2), PSA7A_ORYSJ (Q6YT00), 
PSA7A_XENLA (Q9PVY6), PSA7B_ARATH (O24616), PSA7B_ORYSI (A2Z3I9), 
PSA7B_ORYSJ (Q0J006), PSA7B_XENLA (Q9PVQ1), PSA7L_HUMAN (Q8TAA3), 
PSA7L_MACFA (Q4R7D9), PSA7L_MOUSE (Q9CWH6), PSA7_BOVIN  (Q3ZBG0), 
PSA7_CAEEL  (Q95005), PSA7_CARAU  (Q9PTW9), PSA7_CHICK  (O13268), 
PSA7_CICAR  (Q9SXU1), PSA7_DICDI  (P34120), PSA7_HUMAN  (O14818), 
PSA7_MOUSE  (Q9Z2U0), PSA7_PONAB  (Q5RDH8), PSA7_RAT    (P48004), 
PSA7_SCHPO  (O59770), PSA7_SOLLC  (O24030), PSA7_TRYBB  (Q9NDA2), 
PSA7_YEAST  (P21242), PSA_AERPE   (Q9YC01), PSA_ARCFU   (O29760), 
PSA_HALS3   (B0R2T2), PSA_HALSA   (P57697), PSA_HALWD   (Q18K08), 
PSA_METAC   (Q8TPX5), PSA_METB6   (A7I9C7), PSA_METBF   (Q469M6), 
PSA_METJA   (Q60177), PSA_METKA   (Q8TYB7), PSA_METM5   (A4FZT6), 
PSA_METM6   (A9A846), PSA_METM7   (A6VIP0), PSA_METMA   (Q8PTU1), 
PSA_METMJ   (A3CW55), PSA_METMP   (Q6M0L9), PSA_METPE   (B8GEZ3), 
PSA_METS3   (A5UJS2), PSA_METS5   (A4YCU9), PSA_METTE   (Q59565), 
PSA_METTH   (O26782), PSA_METVS   (A6URN9), PSA_NATPD   (Q3IPJ1), 
PSA_PICTO   (Q6L0W3), PSA_PYRAB   (Q9V122), PSA_PYRAE   (Q8ZVM1), 
PSA_PYRFU   (Q8U0L6), PSA_PYRHO   (O59219), PSA_SULAC   (Q4JB24), 
PSA_SULIA   (C3N5R0), PSA_SULIK   (C4KHD9), PSA_SULIL   (C3MQ43), 
PSA_SULIM   (C3MVG1), PSA_SULIN   (C3NHC6), PSA_SULIY   (C3NEC6), 
PSA_SULSO   (Q9UXC6), PSA_SULTO   (Q975G5), PSA_THEAC   (P25156), 
PSA_THEGJ   (C5A2C2), PSA_THEK1   (O24733), PSA_THEKO   (Q5JIU9), 
PSA_THEON   (B6YSH9), PSA_THEVO   (Q97BZ8)
» More

UniProtKB/Swiss-Prot
False negative sequences
64 sequences

PSA1_RHOER  (Q53080), PSA2_RHOER  (Q53084), PSA3_ENCCU  (Q8SRU7), 
PSA6_DICDI  (Q54XM7), PSA6_ENCCU  (Q8SQS5), PSA7_ENCCU  (Q8SQP9), 
PSA_ACIC1   (A0LU51), PSA_ACIFD   (C7LYP8), PSA_ACTMD   (C6WID9), 
PSA_ARTAT   (A1R6Q8), PSA_ARTCA   (B8H8L7), PSA_ARTS2   (A0JWY7), 
PSA_CATAD   (C7PVV3), PSA_FRAAA   (Q0RLT6), PSA_FRASC   (Q2J9Q4), 
PSA_FRASN   (A8LH53), PSA_GEOOG   (D2S6E3), PSA_GORB4   (D0LDT2), 
PSA_JONDD   (C7R404), PSA_KINRD   (A6W971), PSA_KRIFD   (D2Q4H5), 
PSA_MYCA1   (A0QFB6), PSA_MYCA9   (B1MAI3), PSA_MYCBO   (Q7TZ14), 
PSA_MYCBP   (A1KKF2), PSA_MYCBT   (C1AQ25), PSA_MYCGI   (A4TB55), 
PSA_MYCLB   (B8ZRF4), PSA_MYCLE   (Q9S375), PSA_MYCMM   (B2HFV5), 
PSA_MYCPA   (Q73YW9), PSA_MYCS2   (A0QZ46), PSA_MYCSJ   (A3Q192), 
PSA_MYCSK   (A1UHS6), PSA_MYCSS   (Q1B798), PSA_MYCTA   (A5U4D5), 
PSA_MYCTF   (A5WP83), PSA_MYCTK   (C6DPV2), PSA_MYCTO   (P9WHU0), 
PSA_MYCTU   (P9WHU1), PSA_MYCUA   (A0PQT2), PSA_MYCVP   (A1TAP3), 
PSA_NAKMY   (C8XAQ3), PSA_NOCFA   (Q5YUX3), PSA_NOCSJ   (A1SK14), 
PSA_RENSM   (A9WSI0), PSA_RHOE4   (C0ZZU6), PSA_RHOJR   (Q0SIG0), 
PSA_RHOOB   (C1ASP6), PSA_SACEN   (A4FBY2), PSA_SACVD   (C7MWV6), 
PSA_SALAI   (A8M2A4), PSA_SALTO   (A4X745), PSA_SANKS   (D1BHT8), 
PSA_STANL   (D3Q556), PSA_STRAW   (Q828I7), PSA_STRCO   (Q7AKQ6), 
PSA_STRGG   (B1W307), PSA_STRRD   (D2ATV0), PSA_STRSW   (C9Z4D1), 
PSA_THECD   (D1A2T0), PSA_THEFY   (Q47NZ5), PSA_THESM   (C6A459), 
PSA_XYLCX   (D1BS27)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PSMA_HALDO  (P84799)

		
PDB
[Detailed view]
140 PDB

1FNT; 1G0U; 1G65; 1IRU; 1J2P; 1JD2; 1RYP; 1YA7; 1Z7Q; 2F16; 2FAK; 2GPL; 2KU1; 2KU2; 2ZCY; 3BDM; 3C91; 3D29; 3DY3; 3DY4; 3E47; 3GPJ; 3GPT; 3GPW; 3HYE; 3IPM; 3JRM; 3JSE; 3JTL; 3MG0; 3MG4; 3MG6; 3MG7; 3MG8; 3NZJ; 3NZW; 3NZX; 3OEU; 3OEV; 3OKJ; 3SDI; 3SDK; 3SHJ; 3TDD; 3UN4; 3UN8; 3UNB; 3UNE; 3UNF; 3UNH; 3WXR; 4CR2; 4CR3; 4CR4; 4EU2; 4FZC; 4FZG; 4G4S; 4GK7; 4HNP; 4HRC; 4HRD; 4INR; 4INT; 4INU; 4J70; 4JSQ; 4JSU; 4JT0; 4LQI; 4LTC; 4NNN; 4NNW; 4NO1; 4NO6; 4NO8; 4NO9; 4Q1S; 4QBY; 4QLQ; 4QLS; 4QLT; 4QLU; 4QLV; 4QUX; 4QUY; 4QV0; 4QV1; 4QV3; 4QV4; 4QV5; 4QV6; 4QV7; 4QV8; 4QV9; 4QVL; 4QVM; 4QVN; 4QVP; 4QVQ; 4QVV; 4QVW; 4QVY; 4QW0; 4QW1; 4QW3; 4QW4; 4QW5; 4QW6; 4QW7; 4QWF; 4QWG; 4QWI; 4QWJ; 4QWK; 4QWL; 4QWR; 4QWS; 4QWU; 4QWX; 4QXJ; 4QZ0; 4QZ1; 4QZ2; 4QZ3; 4QZ4; 4QZ5; 4QZ6; 4QZ7; 4QZW; 4QZX; 4QZZ; 4R00; 4R02; 4R17; 4R18; 4R3O; 4R67; 4RUR; 5AHJ
» More

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