Entry: PS00388

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General information about the entry

Entry name [info] PROTEASOME_ALPHA_1
Accession [info] PS00388
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); JUL-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00326

Name and characterization of the entry

Description [info] Proteasome alpha-type subunits signature.
Pattern [info]
[FYNAGS]-x(4)-[STNLV]-x-[FYW]-S-[PDS]-x(0,1)-G-[RKHDS]-x(2)-Q-[LIVA]-
[DENR]-[YH]-[GSAD]-x(2)-[GSAG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 173 in 173 different sequences
Number of true positive hits 173 in 173 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 64
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
173 sequences

PSA1A_ARATH (P34066), PSA1B_ARATH (O23712), PSA1_BOVIN  (Q3T0X5), 
PSA1_CAEEL  (O44156), PSA1_CHICK  (O42265), PSA1_DICDI  (Q27562), 
PSA1_DROME  (P12881), PSA1_HALMA  (Q5V2X8), PSA1_HALVD  (Q9V2V6), 
PSA1_HUMAN  (P25786), PSA1_MACFA  (Q4R3H2), PSA1_MOUSE  (Q9R1P4), 
PSA1_ORYSJ  (P52428), PSA1_PONAB  (Q5REN2), PSA1_RAT    (P18420), 
PSA1_SCHPO  (O94517), PSA1_TRYBB  (Q9GU37), PSA1_TRYBR  (O96788), 
PSA1_TRYCR  (P92188), PSA1_YEAST  (P21243), PSA2A_ARATH (O23708), 
PSA2B_ARATH (Q8L4A7), PSA2_BOVIN  (Q3T0Y5), PSA2_CAEEL  (Q27488), 
PSA2_CARAU  (O73672), PSA2_DICDI  (Q54DM7), PSA2_DROME  (P40301), 
PSA2_HALMA  (Q5V1D4), PSA2_HALVD  (Q9V2V5), PSA2_HUMAN  (P25787), 
PSA2_MOUSE  (P49722), PSA2_NEUCR  (Q8X077), PSA2_ORYSI  (A2YVR7), 
PSA2_ORYSJ  (Q10KF0), PSA2_RAT    (P17220), PSA2_SCHPO  (O94579), 
PSA2_TRYBB  (Q9U793), PSA2_XENLA  (P24495), PSA2_YEAST  (P23639), 
PSA3_ACACA  (P90513), PSA3_ARATH  (O23715), PSA3_BOVIN  (Q58DU5), 
PSA3_CAEEL  (Q09583), PSA3_DICDI  (Q27563), PSA3_DROME  (Q9V5C6), 
PSA3_HUMAN  (P25788), PSA3_MOUSE  (O70435), PSA3_ORYSJ  (Q9LSU0), 
PSA3_RAT    (P18422), PSA3_SCHPO  (Q09682), PSA3_SPIOL  (O24362), 
PSA3_YEAST  (P23638), PSA4A_ARATH (O81148), PSA4A_ORYSI (A2Y9X7), 
PSA4A_ORYSJ (P0C1G8), PSA4B_ARATH (F4JJE5), PSA4B_ORYSI (P0C8Y9), 
PSA4B_ORYSJ (Q5VRG3), PSA4L_DROME (Q9VA12), PSA4_BOVIN  (Q3ZCK9), 
PSA4_CAEEL  (Q9N599), PSA4_DICDI  (P34119), PSA4_DROME  (P18053), 
PSA4_HUMAN  (P25789), PSA4_MACFA  (Q4R932), PSA4_MOUSE  (Q9R1P0), 
PSA4_PETHY  (O82530), PSA4_RAT    (P21670), PSA4_SCHPO  (Q10329), 
PSA4_SPIOL  (P52427), PSA4_YEAST  (P40303), PSA5A_ARATH (O81149), 
PSA5B_ARATH (Q42134), PSA5_BOVIN  (Q5E987), PSA5_CAEEL  (Q95008), 
PSA5_DICDI  (Q55G04), PSA5_DROME  (Q95083), PSA5_ENCCU  (Q8SRU3), 
PSA5_ENTHI  (Q94561), PSA5_HUMAN  (P28066), PSA5_MOUSE  (Q9Z2U1), 
PSA5_ORYSJ  (Q9LSU1), PSA5_RAT    (P34064), PSA5_SCHPO  (Q9UT97), 
PSA5_SOYBN  (Q9M4T8), PSA5_TRYBB  (Q9XZG5), PSA5_YEAST  (P32379), 
PSA6A_ARATH (O81146), PSA6B_ARATH (O81147), PSA6_BOVIN  (Q2YDE4), 
PSA6_CAEEL  (O17586), PSA6_DROME  (Q9XZJ4), PSA6_HUMAN  (P60900), 
PSA6_MOUSE  (Q9QUM9), PSA6_ORYSJ  (Q9LSU3), PSA6_RAT    (P60901), 
PSA6_SCHPO  (O14250), PSA6_SOYBN  (O48551), PSA6_TOBAC  (Q9XG77), 
PSA6_YEAST  (P40302), PSA71_DROME (P22769), PSA71_DROVI (O16811), 
PSA72_DROME (Q24178), PSA73_DROME (Q27575), PSA73_DROVI (O16812), 
PSA7A_ARATH (P30186), PSA7A_ORYSI (A2YXU2), PSA7A_ORYSJ (Q6YT00), 
PSA7A_XENLA (Q9PVY6), PSA7B_ARATH (O24616), PSA7B_ORYSI (A2Z3I9), 
PSA7B_ORYSJ (Q0J006), PSA7B_XENLA (Q9PVQ1), PSA7L_HUMAN (Q8TAA3), 
PSA7L_MACFA (Q4R7D9), PSA7L_MOUSE (Q9CWH6), PSA7_BOVIN  (Q3ZBG0), 
PSA7_CAEEL  (Q95005), PSA7_CARAU  (Q9PTW9), PSA7_CHICK  (O13268), 
PSA7_CICAR  (Q9SXU1), PSA7_DICDI  (P34120), PSA7_HUMAN  (O14818), 
PSA7_MOUSE  (Q9Z2U0), PSA7_PONAB  (Q5RDH8), PSA7_RAT    (P48004), 
PSA7_SCHPO  (O59770), PSA7_SOLLC  (O24030), PSA7_TRYBB  (Q9NDA2), 
PSA7_YEAST  (P21242), PSA_AERPE   (Q9YC01), PSA_ARCFU   (O29760), 
PSA_HALS3   (B0R2T2), PSA_HALSA   (P57697), PSA_HALWD   (Q18K08), 
PSA_METAC   (Q8TPX5), PSA_METB6   (A7I9C7), PSA_METBF   (Q469M6), 
PSA_METJA   (Q60177), PSA_METKA   (Q8TYB7), PSA_METM5   (A4FZT6), 
PSA_METM6   (A9A846), PSA_METM7   (A6VIP0), PSA_METMA   (Q8PTU1), 
PSA_METMJ   (A3CW55), PSA_METMP   (Q6M0L9), PSA_METPE   (B8GEZ3), 
PSA_METS3   (A5UJS2), PSA_METS5   (A4YCU9), PSA_METTE   (Q59565), 
PSA_METTH   (O26782), PSA_METVS   (A6URN9), PSA_NATPD   (Q3IPJ1), 
PSA_PICTO   (Q6L0W3), PSA_PYRAB   (Q9V122), PSA_PYRAE   (Q8ZVM1), 
PSA_PYRFU   (Q8U0L6), PSA_PYRHO   (O59219), PSA_SULAC   (Q4JB24), 
PSA_SULIA   (C3N5R0), PSA_SULIK   (C4KHD9), PSA_SULIL   (C3MQ43), 
PSA_SULIM   (C3MVG1), PSA_SULIN   (C3NHC6), PSA_SULIY   (C3NEC6), 
PSA_SULSO   (Q9UXC6), PSA_SULTO   (Q975G5), PSA_THEAC   (P25156), 
PSA_THEGJ   (C5A2C2), PSA_THEK1   (O24733), PSA_THEKO   (Q5JIU9), 
PSA_THEON   (B6YSH9), PSA_THEVO   (Q97BZ8)
» More

UniProtKB/Swiss-Prot
False negative sequences
64 sequences

PSA1_RHOER  (Q53080), PSA2_RHOER  (Q53084), PSA3_ENCCU  (Q8SRU7), 
PSA6_DICDI  (Q54XM7), PSA6_ENCCU  (Q8SQS5), PSA7_ENCCU  (Q8SQP9), 
PSA_ACIC1   (A0LU51), PSA_ACIFD   (C7LYP8), PSA_ACTMD   (C6WID9), 
PSA_ARTAT   (A1R6Q8), PSA_ARTCA   (B8H8L7), PSA_ARTS2   (A0JWY7), 
PSA_CATAD   (C7PVV3), PSA_FRAAA   (Q0RLT6), PSA_FRASC   (Q2J9Q4), 
PSA_FRASN   (A8LH53), PSA_GEOOG   (D2S6E3), PSA_GORB4   (D0LDT2), 
PSA_JONDD   (C7R404), PSA_KINRD   (A6W971), PSA_KRIFD   (D2Q4H5), 
PSA_MYCA1   (A0QFB6), PSA_MYCA9   (B1MAI3), PSA_MYCBO   (Q7TZ14), 
PSA_MYCBP   (A1KKF2), PSA_MYCBT   (C1AQ25), PSA_MYCGI   (A4TB55), 
PSA_MYCLB   (B8ZRF4), PSA_MYCLE   (Q9S375), PSA_MYCMM   (B2HFV5), 
PSA_MYCPA   (Q73YW9), PSA_MYCS2   (A0QZ46), PSA_MYCSJ   (A3Q192), 
PSA_MYCSK   (A1UHS6), PSA_MYCSS   (Q1B798), PSA_MYCTA   (A5U4D5), 
PSA_MYCTF   (A5WP83), PSA_MYCTK   (C6DPV2), PSA_MYCTO   (P9WHU0), 
PSA_MYCTU   (P9WHU1), PSA_MYCUA   (A0PQT2), PSA_MYCVP   (A1TAP3), 
PSA_NAKMY   (C8XAQ3), PSA_NOCFA   (Q5YUX3), PSA_NOCSJ   (A1SK14), 
PSA_RENSM   (A9WSI0), PSA_RHOE4   (C0ZZU6), PSA_RHOOB   (C1ASP6), 
PSA_RHOSR   (Q0SIG0), PSA_SACEN   (A4FBY2), PSA_SACVD   (C7MWV6), 
PSA_SALAI   (A8M2A4), PSA_SALTO   (A4X745), PSA_SANKS   (D1BHT8), 
PSA_STANL   (D3Q556), PSA_STRAW   (Q828I7), PSA_STRCO   (Q7AKQ6), 
PSA_STRGG   (B1W307), PSA_STRRD   (D2ATV0), PSA_STRSW   (C9Z4D1), 
PSA_THECD   (D1A2T0), PSA_THEFY   (Q47NZ5), PSA_THESM   (C6A459), 
PSA_XYLCX   (D1BS27)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PSMA_HALDO  (P84799)

		
PDB
[Detailed view]
77 PDB

1FNT; 1G0U; 1G65; 1IRU; 1J2P; 1JD2; 1RYP; 1VSY; 1YA7; 1Z7Q; 2F16; 2FAK; 2GPL; 2KU1; 2KU2; 2ZCY; 3BDM; 3C91; 3D29; 3DY3; 3DY4; 3E47; 3GPJ; 3GPT; 3GPW; 3HYE; 3IPM; 3JRM; 3JSE; 3JTL; 3L5Q; 3MG0; 3MG4; 3MG6; 3MG7; 3MG8; 3NZJ; 3NZW; 3NZX; 3OEU; 3OEV; 3OKJ; 3SDI; 3SDK; 3SHJ; 3TDD; 3UN4; 3UN8; 3UNB; 3UNE; 3UNF; 3UNH; 4CR2; 4CR3; 4CR4; 4EU2; 4FZC; 4FZG; 4G4S; 4GK7; 4HNP; 4HRC; 4HRD; 4INR; 4INT; 4INU; 4J70; 4JSQ; 4JSU; 4JT0; 4LQI; 4NNN; 4NNW; 4NO1; 4NO6; 4NO8; 4NO9
» More

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