Entry: PS00388

General information about the entry

Entry name [info] PROTEASOME_ALPHA_1
Accession [info] PS00388
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); JUL-2013 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00326

Name and characterization of the entry

Description [info] Proteasome alpha-type subunits signature.
Pattern [info]
[FYNAGS]-x(4)-[STNLV]-x-[FYW]-S-[PDS]-x(0,1)-G-[RKHDS]-x(2)-Q-[LIVA]-
[DENR]-[YH]-[GSAD]-x(2)-[GSAG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 174 in 174 different sequences
Number of true positive hits 174 in 174 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 64
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.11 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
174 sequences

PSA1A_ARATH (P34066    ), PSA1B_ARATH (O23712    ), PSA1_BOVIN  (Q3T0X5    ), 
PSA1_CAEEL  (O44156    ), PSA1_CHICK  (O42265    ), PSA1_DICDI  (Q27562    ), 
PSA1_DROME  (P12881    ), PSA1_HALMA  (Q5V2X8    ), PSA1_HALVD  (Q9V2V6    ), 
PSA1_HUMAN  (P25786    ), PSA1_MACFA  (Q4R3H2    ), PSA1_MOUSE  (Q9R1P4    ), 
PSA1_ORYSJ  (P52428    ), PSA1_PONAB  (Q5REN2    ), PSA1_RAT    (P18420    ), 
PSA1_SCHPO  (O94517    ), PSA1_TRYBB  (Q9GU37    ), PSA1_TRYBR  (O96788    ), 
PSA1_TRYCR  (P92188    ), PSA1_YEAST  (P21243    ), PSA2A_ARATH (O23708    ), 
PSA2B_ARATH (Q8L4A7    ), PSA2_BOVIN  (Q3T0Y5    ), PSA2_CAEEL  (Q27488    ), 
PSA2_CARAU  (O73672    ), PSA2_DICDI  (Q54DM7    ), PSA2_DROME  (P40301    ), 
PSA2_HALMA  (Q5V1D4    ), PSA2_HALVD  (Q9V2V5    ), PSA2_HUMAN  (P25787    ), 
PSA2_MOUSE  (P49722    ), PSA2_NEUCR  (Q8X077    ), PSA2_ORYSI  (A2YVR7    ), 
PSA2_ORYSJ  (Q10KF0    ), PSA2_RAT    (P17220    ), PSA2_SCHPO  (O94579    ), 
PSA2_TRYBB  (Q9U793    ), PSA2_XENLA  (P24495    ), PSA2_YEAST  (P23639    ), 
PSA3_ACACA  (P90513    ), PSA3_ARATH  (O23715    ), PSA3_BOVIN  (Q58DU5    ), 
PSA3_CAEEL  (Q09583    ), PSA3_DICDI  (Q27563    ), PSA3_DROME  (Q9V5C6    ), 
PSA3_HUMAN  (P25788    ), PSA3_MOUSE  (O70435    ), PSA3_ORYSJ  (Q9LSU0    ), 
PSA3_RAT    (P18422    ), PSA3_SCHPO  (Q09682    ), PSA3_SPIOL  (O24362    ), 
PSA3_YEAST  (P23638    ), PSA4A_ARATH (O81148    ), PSA4A_ORYSI (A2Y9X7    ), 
PSA4A_ORYSJ (P0DKK3    ), PSA4B_ARATH (F4JJE5    ), PSA4B_ORYSI (P0C8Y9    ), 
PSA4B_ORYSJ (Q5VRG3    ), PSA4C_ORYSJ (P0DKK4    ), PSA4L_DROME (Q9VA12    ), 
PSA4_BOVIN  (Q3ZCK9    ), PSA4_CAEEL  (Q9N599    ), PSA4_DICDI  (P34119    ), 
PSA4_DROME  (P18053    ), PSA4_HUMAN  (P25789    ), PSA4_MACFA  (Q4R932    ), 
PSA4_MOUSE  (Q9R1P0    ), PSA4_PETHY  (O82530    ), PSA4_RAT    (P21670    ), 
PSA4_SCHPO  (Q10329    ), PSA4_SPIOL  (P52427    ), PSA4_YEAST  (P40303    ), 
PSA5A_ARATH (O81149    ), PSA5B_ARATH (Q42134    ), PSA5_BOVIN  (Q5E987    ), 
PSA5_CAEEL  (Q95008    ), PSA5_DICDI  (Q55G04    ), PSA5_DROME  (Q95083    ), 
PSA5_ENCCU  (Q8SRU3    ), PSA5_ENTHI  (Q94561    ), PSA5_HUMAN  (P28066    ), 
PSA5_MOUSE  (Q9Z2U1    ), PSA5_ORYSJ  (Q9LSU1    ), PSA5_RAT    (P34064    ), 
PSA5_SCHPO  (Q9UT97    ), PSA5_SOYBN  (Q9M4T8    ), PSA5_TRYBB  (Q9XZG5    ), 
PSA5_YEAST  (P32379    ), PSA6A_ARATH (O81146    ), PSA6B_ARATH (O81147    ), 
PSA6_BOVIN  (Q2YDE4    ), PSA6_CAEEL  (O17586    ), PSA6_DROME  (Q9XZJ4    ), 
PSA6_HUMAN  (P60900    ), PSA6_MOUSE  (Q9QUM9    ), PSA6_ORYSJ  (Q9LSU3    ), 
PSA6_RAT    (P60901    ), PSA6_SCHPO  (O14250    ), PSA6_SOYBN  (O48551    ), 
PSA6_TOBAC  (Q9XG77    ), PSA6_YEAST  (P40302    ), PSA71_DROME (P22769    ), 
PSA71_DROVI (O16811    ), PSA72_DROME (Q24178    ), PSA73_DROME (Q27575    ), 
PSA73_DROVI (O16812    ), PSA7A_ARATH (P30186    ), PSA7A_ORYSI (A2YXU2    ), 
PSA7A_ORYSJ (Q6YT00    ), PSA7A_XENLA (Q9PVY6    ), PSA7B_ARATH (O24616    ), 
PSA7B_ORYSI (A2Z3I9    ), PSA7B_ORYSJ (Q0J006    ), PSA7B_XENLA (Q9PVQ1    ), 
PSA7L_HUMAN (Q8TAA3    ), PSA7L_MACFA (Q4R7D9    ), PSA7L_MOUSE (Q9CWH6    ), 
PSA7_BOVIN  (Q3ZBG0    ), PSA7_CAEEL  (Q95005    ), PSA7_CARAU  (Q9PTW9    ), 
PSA7_CHICK  (O13268    ), PSA7_CICAR  (Q9SXU1    ), PSA7_DICDI  (P34120    ), 
PSA7_HUMAN  (O14818    ), PSA7_MOUSE  (Q9Z2U0    ), PSA7_PONAB  (Q5RDH8    ), 
PSA7_RAT    (P48004    ), PSA7_SCHPO  (O59770    ), PSA7_SOLLC  (O24030    ), 
PSA7_TRYBB  (Q9NDA2    ), PSA7_YEAST  (P21242    ), PSA_AERPE   (Q9YC01    ), 
PSA_ARCFU   (O29760    ), PSA_HALS3   (B0R2T2    ), PSA_HALSA   (P57697    ), 
PSA_HALWD   (Q18K08    ), PSA_METAC   (Q8TPX5    ), PSA_METB6   (A7I9C7    ), 
PSA_METBF   (Q469M6    ), PSA_METJA   (Q60177    ), PSA_METKA   (Q8TYB7    ), 
PSA_METM5   (A4FZT6    ), PSA_METM6   (A9A846    ), PSA_METM7   (A6VIP0    ), 
PSA_METMA   (Q8PTU1    ), PSA_METMJ   (A3CW55    ), PSA_METMP   (Q6M0L9    ), 
PSA_METPE   (B8GEZ3    ), PSA_METS3   (A5UJS2    ), PSA_METS5   (A4YCU9    ), 
PSA_METTE   (Q59565    ), PSA_METTH   (O26782    ), PSA_METVS   (A6URN9    ), 
PSA_NATPD   (Q3IPJ1    ), PSA_PICTO   (Q6L0W3    ), PSA_PYRAB   (Q9V122    ), 
PSA_PYRAE   (Q8ZVM1    ), PSA_PYRFU   (Q8U0L6    ), PSA_PYRHO   (O59219    ), 
PSA_SULAC   (Q4JB24    ), PSA_SULIA   (C3N5R0    ), PSA_SULIK   (C4KHD9    ), 
PSA_SULIL   (C3MQ43    ), PSA_SULIM   (C3MVG1    ), PSA_SULIN   (C3NHC6    ), 
PSA_SULIY   (C3NEC6    ), PSA_SULSO   (Q9UXC6    ), PSA_SULTO   (Q975G5    ), 
PSA_THEAC   (P25156    ), PSA_THEGJ   (C5A2C2    ), PSA_THEK1   (O24733    ), 
PSA_THEKO   (Q5JIU9    ), PSA_THEON   (B6YSH9    ), PSA_THEVO   (Q97BZ8    )
» more

UniProtKB/Swiss-Prot
False negative sequences
64 sequences

PSA1_RHOER  (Q53080    ), PSA2_RHOER  (Q53084    ), PSA3_ENCCU  (Q8SRU7    ), 
PSA6_DICDI  (Q54XM7    ), PSA6_ENCCU  (Q8SQS5    ), PSA7_ENCCU  (Q8SQP9    ), 
PSA_ACIC1   (A0LU51    ), PSA_ACIFD   (C7LYP8    ), PSA_ACTMD   (C6WID9    ), 
PSA_ARTAT   (A1R6Q8    ), PSA_ARTS2   (A0JWY7    ), PSA_CATAD   (C7PVV3    ), 
PSA_FRAAA   (Q0RLT6    ), PSA_FRASC   (Q2J9Q4    ), PSA_FRASN   (A8LH53    ), 
PSA_GEOOG   (D2S6E3    ), PSA_GORB4   (D0LDT2    ), PSA_JONDD   (C7R404    ), 
PSA_KINRD   (A6W971    ), PSA_KRIFD   (D2Q4H5    ), PSA_MYCA1   (A0QFB6    ), 
PSA_MYCA9   (B1MAI3    ), PSA_MYCBO   (Q7TZ14    ), PSA_MYCBP   (A1KKF2    ), 
PSA_MYCBT   (C1AQ25    ), PSA_MYCGI   (A4TB55    ), PSA_MYCLB   (B8ZRF4    ), 
PSA_MYCLE   (Q9S375    ), PSA_MYCMM   (B2HFV5    ), PSA_MYCPA   (Q73YW9    ), 
PSA_MYCS2   (A0QZ46    ), PSA_MYCSJ   (A3Q192    ), PSA_MYCSK   (A1UHS6    ), 
PSA_MYCSS   (Q1B798    ), PSA_MYCTA   (A5U4D5    ), PSA_MYCTF   (A5WP83    ), 
PSA_MYCTK   (C6DPV2    ), PSA_MYCTO   (P9WHU0    ), PSA_MYCTU   (P9WHU1    ), 
PSA_MYCUA   (A0PQT2    ), PSA_MYCVP   (A1TAP3    ), PSA_NAKMY   (C8XAQ3    ), 
PSA_NOCFA   (Q5YUX3    ), PSA_NOCSJ   (A1SK14    ), PSA_PSECP   (B8H8L7    ), 
PSA_RENSM   (A9WSI0    ), PSA_RHOE4   (C0ZZU6    ), PSA_RHOJR   (Q0SIG0    ), 
PSA_RHOOB   (C1ASP6    ), PSA_SACEN   (A4FBY2    ), PSA_SACVD   (C7MWV6    ), 
PSA_SALAI   (A8M2A4    ), PSA_SALTO   (A4X745    ), PSA_SANKS   (D1BHT8    ), 
PSA_STANL   (D3Q556    ), PSA_STRAW   (Q828I7    ), PSA_STRCO   (Q7AKQ6    ), 
PSA_STRGG   (B1W307    ), PSA_STRRD   (D2ATV0    ), PSA_STRSW   (C9Z4D1    ), 
PSA_THECD   (D1A2T0    ), PSA_THEFY   (Q47NZ5    ), PSA_THESM   (C6A459    ), 
PSA_XYLCX   (D1BS27    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PSMA_HALDO  (P84799    )

		
PDB
[Detailed view]
216 PDB

1FNT; 1G0U; 1G65; 1IRU; 1J2P; 1JD2; 1RYP; 1YA7; 1Z7Q; 2F16; 2FAK; 2GPL; 2KU1; 2KU2; 2ZCY; 3BDM; 3C91; 3D29; 3DY3; 3DY4; 3E47; 3GPJ; 3GPT; 3GPW; 3HYE; 3IPM; 3JRM; 3JSE; 3JTL; 3MG0; 3MG4; 3MG6; 3MG7; 3MG8; 3NZJ; 3NZW; 3NZX; 3OEU; 3OEV; 3OKJ; 3SDI; 3SDK; 3SHJ; 3TDD; 3UN4; 3UN8; 3UNB; 3UNE; 3UNF; 3UNH; 3WXR; 4CR2; 4CR3; 4CR4; 4EU2; 4FZC; 4FZG; 4G4S; 4GK7; 4HNP; 4HRC; 4HRD; 4INR; 4INT; 4INU; 4J70; 4JSQ; 4JSU; 4JT0; 4LQI; 4LTC; 4NNN; 4NNW; 4NO1; 4NO6; 4NO8; 4NO9; 4Q1S; 4QBY; 4QLQ; 4QLS; 4QLT; 4QLU; 4QLV; 4QUX; 4QUY; 4QV0; 4QV1; 4QV3; 4QV4; 4QV5; 4QV6; 4QV7; 4QV8; 4QV9; 4QVL; 4QVM; 4QVN; 4QVP; 4QVQ; 4QVV; 4QVW; 4QVY; 4QW0; 4QW1; 4QW3; 4QW4; 4QW5; 4QW6; 4QW7; 4QWF; 4QWG; 4QWI; 4QWJ; 4QWK; 4QWL; 4QWR; 4QWS; 4QWU; 4QWX; 4QXJ; 4QZ0; 4QZ1; 4QZ2; 4QZ3; 4QZ4; 4QZ5; 4QZ6; 4QZ7; 4QZW; 4QZX; 4QZZ; 4R00; 4R02; 4R17; 4R18; 4R3O; 4R67; 4RUR; 4X6Z; 4Y69; 4Y6A; 4Y6V; 4Y6Z; 4Y70; 4Y74; 4Y75; 4Y77; 4Y78; 4Y7W; 4Y7X; 4Y7Y; 4Y80; 4Y81; 4Y82; 4Y84; 4Y8G; 4Y8H; 4Y8I; 4Y8J; 4Y8K; 4Y8L; 4Y8M; 4Y8N; 4Y8O; 4Y8P; 4Y8Q; 4Y8R; 4Y8S; 4Y8T; 4Y8U; 4Y9Y; 4Y9Z; 4YA0; 4YA1; 4YA2; 4YA3; 4YA4; 4YA5; 4YA7; 4YA9; 4Z1L; 5A0Q; 5A5B; 5AHJ; 5BOU; 5CGF; 5CGG; 5CGH; 5CGI; 5CZ4; 5CZ5; 5CZ6; 5CZ7; 5CZ8; 5CZ9; 5CZA; 5D0S; 5D0T; 5D0V; 5D0W; 5D0X; 5D0Z; 5DKI; 5DKJ; 5DSV; 5FG7; 5FG9; 5FGA; 5FGD; 5FGE; 5FGF; 5FGG; 5FGH; 5FGI; 5FHS
» more

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