Entry: PS00388

General information about the entry
Entry name PROTEASOME_A_1
Accession number PS00388
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00326
Name and characterization of the entry
DescriptionProteasome A-type subunits signature.
Pattern [FYNAGS]-x(4)-[STNLV]-x-[FYW]-S-[PDS]-x(0,1)-G-[RKHDS]-x(2)-Q-[LIVA]- [DENR]-[YH]-[GSAD]-x(2)-[GSAG].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 172 hits in 172 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 172 hits in 172 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 63
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 73.19 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
PSA1A_ARATH (P34066), PSA1B_ARATH (O23712), PSA1_BOVIN  (Q3T0X5), 
PSA1_CAEEL  (O44156), PSA1_CHICK  (O42265), PSA1_DICDI  (Q27562), 
PSA1_DROME  (P12881), PSA1_HALMA  (Q5V2X8), PSA1_HALVD  (Q9V2V6), 
PSA1_HUMAN  (P25786), PSA1_MACFA  (Q4R3H2), PSA1_MOUSE  (Q9R1P4), 
PSA1_ORYSJ  (P52428), PSA1_PONAB  (Q5REN2), PSA1_RAT    (P18420), 
PSA1_SCHPO  (O94517), PSA1_TRYBB  (Q9GU37), PSA1_TRYBR  (O96788), 
PSA1_TRYCR  (P92188), PSA1_YEAST  (P21243), PSA2A_ARATH (O23708), 
PSA2B_ARATH (Q8L4A7), PSA2_BOVIN  (Q3T0Y5), PSA2_CAEEL  (Q27488), 
PSA2_CARAU  (O73672), PSA2_DICDI  (Q54DM7), PSA2_DROME  (P40301), 
PSA2_HALMA  (Q5V1D4), PSA2_HALVD  (Q9V2V5), PSA2_HUMAN  (P25787), 
PSA2_MOUSE  (P49722), PSA2_NEUCR  (Q8X077), PSA2_ORYSI  (A2YVR7), 
PSA2_ORYSJ  (Q10KF0), PSA2_RAT    (P17220), PSA2_SCHPO  (O94579), 
PSA2_TRYBB  (Q9U793), PSA2_XENLA  (P24495), PSA2_YEAST  (P23639), 
PSA3_ACACA  (P90513), PSA3_ARATH  (O23715), PSA3_BOVIN  (Q58DU5), 
PSA3_CAEEL  (Q09583), PSA3_DICDI  (Q27563), PSA3_DROME  (Q9V5C6), 
PSA3_HUMAN  (P25788), PSA3_MOUSE  (O70435), PSA3_ORYSJ  (Q9LSU0), 
PSA3_RAT    (P18422), PSA3_SCHPO  (Q09682), PSA3_SPIOL  (O24362), 
PSA3_YEAST  (P23638), PSA4A_ORYSI (A2Y9X7), PSA4A_ORYSJ (P0C1G8), 
PSA4B_ORYSI (P0C8Y9), PSA4B_ORYSJ (Q5VRG3), PSA4L_DROME (Q9VA12), 
PSA4_ARATH  (O81148), PSA4_BOVIN  (Q3ZCK9), PSA4_CAEEL  (Q9N599), 
PSA4_DICDI  (P34119), PSA4_DROME  (P18053), PSA4_HUMAN  (P25789), 
PSA4_MACFA  (Q4R932), PSA4_MOUSE  (Q9R1P0), PSA4_PETHY  (O82530), 
PSA4_RAT    (P21670), PSA4_SCHPO  (Q10329), PSA4_SPIOL  (P52427), 
PSA4_YEAST  (P40303), PSA5A_ARATH (O81149), PSA5B_ARATH (Q42134), 
PSA5_BOVIN  (Q5E987), PSA5_CAEEL  (Q95008), PSA5_DICDI  (Q55G04), 
PSA5_DROME  (Q95083), PSA5_ENCCU  (Q8SRU3), PSA5_ENTHI  (Q94561), 
PSA5_HUMAN  (P28066), PSA5_MOUSE  (Q9Z2U1), PSA5_ORYSJ  (Q9LSU1), 
PSA5_RAT    (P34064), PSA5_SCHPO  (Q9UT97), PSA5_SOYBN  (Q9M4T8), 
PSA5_TRYBB  (Q9XZG5), PSA5_YEAST  (P32379), PSA6A_ARATH (O81146), 
PSA6B_ARATH (O81147), PSA6_BOVIN  (Q2YDE4), PSA6_CAEEL  (O17586), 
PSA6_DROME  (Q9XZJ4), PSA6_HUMAN  (P60900), PSA6_MOUSE  (Q9QUM9), 
PSA6_ORYSJ  (Q9LSU3), PSA6_RAT    (P60901), PSA6_SCHPO  (O14250), 
PSA6_SOYBN  (O48551), PSA6_TOBAC  (Q9XG77), PSA6_YEAST  (P40302), 
PSA71_DROME (P22769), PSA71_DROVI (O16811), PSA72_DROME (Q24178), 
PSA73_DROME (Q27575), PSA73_DROVI (O16812), PSA7A_ARATH (P30186), 
PSA7A_ORYSI (A2YXU2), PSA7A_ORYSJ (Q6YT00), PSA7A_XENLA (Q9PVY6), 
PSA7B_ARATH (O24616), PSA7B_ORYSI (A2Z3I9), PSA7B_ORYSJ (Q0J006), 
PSA7B_XENLA (Q9PVQ1), PSA7L_HUMAN (Q8TAA3), PSA7L_MACFA (Q4R7D9), 
PSA7L_MOUSE (Q9CWH6), PSA7_BOVIN  (Q3ZBG0), PSA7_CAEEL  (Q95005), 
PSA7_CARAU  (Q9PTW9), PSA7_CHICK  (O13268), PSA7_CICAR  (Q9SXU1), 
PSA7_DICDI  (P34120), PSA7_HUMAN  (O14818), PSA7_MOUSE  (Q9Z2U0), 
PSA7_PONAB  (Q5RDH8), PSA7_RAT    (P48004), PSA7_SCHPO  (O59770), 
PSA7_SOLLC  (O24030), PSA7_TRYBB  (Q9NDA2), PSA7_YEAST  (P21242), 
PSA_AERPE   (Q9YC01), PSA_ARCFU   (O29760), PSA_HALS3   (B0R2T2), 
PSA_HALSA   (P57697), PSA_HALWD   (Q18K08), PSA_METAC   (Q8TPX5), 
PSA_METB6   (A7I9C7), PSA_METBF   (Q469M6), PSA_METJA   (Q60177), 
PSA_METKA   (Q8TYB7), PSA_METM5   (A4FZT6), PSA_METM6   (A9A846), 
PSA_METM7   (A6VIP0), PSA_METMA   (Q8PTU1), PSA_METMJ   (A3CW55), 
PSA_METMP   (Q6M0L9), PSA_METPE   (B8GEZ3), PSA_METS3   (A5UJS2), 
PSA_METS5   (A4YCU9), PSA_METTE   (Q59565), PSA_METTH   (O26782), 
PSA_METVS   (A6URN9), PSA_NATPD   (Q3IPJ1), PSA_PICTO   (Q6L0W3), 
PSA_PYRAB   (Q9V122), PSA_PYRAE   (Q8ZVM1), PSA_PYRFU   (Q8U0L6), 
PSA_PYRHO   (O59219), PSA_PYRKO   (Q5JIU9), PSA_SULAC   (Q4JB24), 
PSA_SULIA   (C3N5R0), PSA_SULIK   (C4KHD9), PSA_SULIL   (C3MQ43), 
PSA_SULIM   (C3MVG1), PSA_SULIN   (C3NHC6), PSA_SULIY   (C3NEC6), 
PSA_SULSO   (Q9UXC6), PSA_SULTO   (Q975G5), PSA_THEAC   (P25156), 
PSA_THEGJ   (C5A2C2), PSA_THEK1   (O24733), PSA_THEON   (B6YSH9), 
PSA_THEVO   (Q97BZ8)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PSA1_RHOER  (Q53080), PSA2_RHOER  (Q53084), PSA3_ENCCU  (Q8SRU7), 
PSA6_DICDI  (Q54XM7), PSA6_ENCCU  (Q8SQS5), PSA7_ENCCU  (Q8SQP9), 
PSA_ACIC1   (A0LU51), PSA_ACIFD   (C7LYP8), PSA_ACTMD   (C6WID9), 
PSA_ARTAT   (A1R6Q8), PSA_ARTCA   (B8H8L7), PSA_ARTS2   (A0JWY7), 
PSA_CATAD   (C7PVV3), PSA_FRAAA   (Q0RLT6), PSA_FRASC   (Q2J9Q4), 
PSA_FRASN   (A8LH53), PSA_GEOOG   (D2S6E3), PSA_GORB4   (D0LDT2), 
PSA_JONDD   (C7R404), PSA_KINRD   (A6W971), PSA_KRIFD   (D2Q4H5), 
PSA_MYCA1   (A0QFB6), PSA_MYCA9   (B1MAI3), PSA_MYCBO   (Q7TZ14), 
PSA_MYCBP   (A1KKF2), PSA_MYCBT   (C1AQ25), PSA_MYCGI   (A4TB55), 
PSA_MYCLB   (B8ZRF4), PSA_MYCLE   (Q9S375), PSA_MYCMM   (B2HFV5), 
PSA_MYCPA   (Q73YW9), PSA_MYCS2   (A0QZ46), PSA_MYCSJ   (A3Q192), 
PSA_MYCSK   (A1UHS6), PSA_MYCSS   (Q1B798), PSA_MYCTA   (A5U4D5), 
PSA_MYCTF   (A5WP83), PSA_MYCTK   (C6DPV2), PSA_MYCTU   (O33244), 
PSA_MYCUA   (A0PQT2), PSA_MYCVP   (A1TAP3), PSA_NAKMY   (C8XAQ3), 
PSA_NOCFA   (Q5YUX3), PSA_NOCSJ   (A1SK14), PSA_RENSM   (A9WSI0), 
PSA_RHOE4   (C0ZZU6), PSA_RHOOB   (C1ASP6), PSA_RHOSR   (Q0SIG0), 
PSA_SACEN   (A4FBY2), PSA_SACVD   (C7MWV6), PSA_SALAI   (A8M2A4), 
PSA_SALTO   (A4X745), PSA_SANKS   (D1BHT8), PSA_STANL   (D3Q556), 
PSA_STRAW   (Q828I7), PSA_STRCO   (Q7AKQ6), PSA_STRGG   (B1W307), 
PSA_STRRD   (D2ATV0), PSA_STRSW   (C9Z4D1), PSA_THECD   (D1A2T0), 
PSA_THEFY   (Q47NZ5), PSA_THESM   (C6A459), PSA_XYLCX   (D1BS27)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
PSMA_HALDO  (P84799)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1FNT; 1G0U; 1G65; 1IRU; 1J2P; 1JD2; 1RYP; 1VSY; 1YA7; 1Z7Q; 2F16; 2FAK; 2GPL; 2KU1; 2KU2; 2ZCY; 3BDM; 3C91; 3D29; 3DY3; 3DY4; 3E47; 3GPJ; 3GPT; 3GPW; 3HYE; 3IPM; 3JRM; 3JSE; 3JTL; 3L5Q; 3MG0; 3MG4; 3MG6; 3MG7; 3MG8; 3NZJ; 3NZW; 3NZX; 3OEU; 3OEV; 3OKJ; 3SDI; 3SDK; 3SHJ; 3TDD; 3UN4; 3UN8; 3UNB; 3UNE; 3UNF; 3UNH; 4B4T; 4FZC; 4FZG; 4G4S; 4GK7; 4INR; 4INT; 4INU;

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