Entry: PS00447

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General information about the entry

Entry name [info] DNA_POLYMERASE_A
Accession [info] PS00447
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); NOV-1995 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00412

Name and characterization of the entry

Description [info] DNA polymerase family A signature.
Pattern [info]
R-x(2)-[GSAV]-K-x(3)-[LIVMFY]-[AGQ]-x(2)-Y-x(2)-[GS]-x(3)-[LIVMA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 54 in 54 different sequences
Number of true positive hits 51 in 51 different sequences
Number of 'unknown' hits
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 9
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.44 %
Recall (true positives / (true positives + false negatives)) 85.00 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
51 sequences

DPO1F_THETH (P30313), DPO1T_THET8 (P52028), DPO1_AQUAE  (O67779), 
DPO1_BACCA  (Q04957), DPO1_BACSU  (O34996), DPO1_BORBU  (O51498), 
DPO1_CALBD  (Q59156), DPO1_CHLAA  (O08307), DPO1_DEIRA  (P52027), 
DPO1_ECOLI  (P00582), DPO1_GEOSE  (P52026), DPO1_HAEIN  (P43741), 
DPO1_HELPJ  (Q9ZJE9), DPO1_HELPY  (P56105), DPO1_LACLA  (Q9CDS1), 
DPO1_LACLM  (O32801), DPO1_MYCBO  (P0A551), DPO1_MYCLE  (P46835), 
DPO1_MYCTO  (P9WNU4), DPO1_MYCTU  (P9WNU5), DPO1_PSEAE  (Q9HT80), 
DPO1_RHILE  (Q9S1G2), DPO1_RICBR  (Q1RH76), DPO1_RICCN  (Q92GB7), 
DPO1_RICFE  (Q9RAA9), DPO1_RICHE  (Q9RLB6), DPO1_RICPR  (O05949), 
DPO1_RICTY  (Q9RLA0), DPO1_SALTY  (Q9F173), DPO1_STRPN  (P59199), 
DPO1_STRR6  (P59200), DPO1_THEAQ  (P19821), DPO1_THECA  (P80194), 
DPO1_THEFI  (O52225), DPO1_TREPA  (P74933), DPOG1_CHICK (Q92076), 
DPOG1_DROME (Q27607), DPOG1_HUMAN (P54098), DPOG1_MOUSE (P54099), 
DPOG1_RAT   (Q9QYV8), DPOG1_XENLA (Q91684), DPOG_NEUCR  (Q9Y767), 
DPOG_YEAST  (P15801), DPOLQ_HUMAN (O75417), DPOL_BPMD2  (O64235), 
DPOL_BPML5  (Q05254), DPOL_BPSP1  (P30314), DPOL_BPSP2  (P06225), 
DPOL_BPT3   (P20311), DPOL_BPT5   (P19822), DPOL_BPT7   (P00581)
» More

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

DPO1_SYNY3  (Q55971), DPOG_PICPA  (Q01941), DPOG_SCHPO  (Q12704), 
DPOLN_HUMAN (Q7Z5Q5), DPOLN_MOUSE (Q7TQ07), POLIA_ARATH (F4I6M1), 
POLIA_ORYSJ (Q6Z4T5), POLIB_ARATH (Q84ND9), POLIB_ORYSJ (Q6Z4T3)
» More

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

AGGC_ECOLX  (P46005), ARPB_ECOLI  (P76205), FA83B_MOUSE (Q0VBM2)

		
PDB
[Detailed view]
111 PDB

1BGX; 1D8Y; 1D9D; 1D9F; 1DPI; 1JXE; 1KFD; 1KFS; 1KLN; 1KRP; 1KSP; 1KTQ; 1L3S; 1L3T; 1L3U; 1L3V; 1L5U; 1LV5; 1NJX; 1NJY; 1NJZ; 1NK0; 1NK4; 1NK5; 1NK6; 1NK7; 1NK8; 1NK9; 1NKB; 1NKC; 1NKE; 1QSL; 1QSS; 1QSY; 1QTM; 1SKR; 1SKS; 1SKW; 1SL1; 1T7P; 1T8E; 1TAQ; 1TAU; 1TK0; 1TK8; 1TKD; 1U45; 1U47; 1U48; 1U49; 1U4B; 1UA1; 1X9M; 1X9S; 1X9W; 1XC9; 1XWL; 1ZYQ; 2AJQ; 2BDP; 2HHX; 2KFN; 2KFZ; 2KTQ; 2KZM; 2KZZ; 3BDP; 3EYZ; 3EZ5; 3IKM; 3KTQ; 3LWL; 3LWM; 3M8R; 3M8S; 3OJS; 3OJU; 3PO4; 3PO5; 3PY8; 3RR8; 3RRG; 3RRH; 3RTV; 3SV3; 3SV4; 3SYZ; 3SZ2; 3T3F; 4BDP; 4BWJ; 4BWM; 4C8K; 4C8L; 4C8M; 4C8N; 4C8O; 4CCH; 4DF4; 4DF8; 4DFJ; 4DFK; 4DFM; 4DFP; 4DLE; 4DLG; 4ELT; 4ELU; 4ELV; 4KTQ; 5KTQ
» More

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