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Entry: PS00570
General information about the entry
Entry nameRING_HYDROXYL_ALPHA
Accession numberPS00570
Entry typePATTERN
DateDEC-1991 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00493
Name and characterization of the entry
DescriptionBacterial ring hydroxylating dioxygenases alpha-subunit signature.
PatternC-x-H-R-[GAR]-x(7,8)-[GEKVI]-[NERAQ]-x(4,5)-C-x-[FY]-H.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 34 hits in 34 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 30 hits in 30 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 88.24 %
  • Recall (true hits / (true hits + false negatives)): 96.77 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,iron_sulfur
  • `Interesting' site in the pattern: 3,iron_sulfur
  • `Interesting' site in the pattern: 10,iron_sulfur
  • `Interesting' site in the pattern: 13,iron_sulfur
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ANDAC_BURCE (Q84BZ3), ANTDA_ACIAD (O85673), BEDC1_PSEPU (Q07944), 
BENA_ACIAD  (P07769), BNZA_PSEP1  (A5W4F2), BNZA_PSEPU  (P0C618), 
BPHA1_PSES1 (Q52438), BPHA_BURXL  (P37333), BPHA_COMTE  (Q46372), 
BPHA_PSEPS  (Q52028), CBAA_COMTE  (Q44256), CBDA_BURCE  (Q51601), 
HCAE_ECO57  (P0ABR6), HCAE_ECOHS  (A8A344), HCAE_ECOLI  (P0ABR5), 
HCAE_SHIBS  (Q31XV2), HCAE_SHIF8  (Q0T1Y1), HCAE_SHIFL  (Q83K39), 
HCAE_SHISS  (Q3YZ15), NDOB_PSEAI  (Q51494), NDOB_PSEFL  (O07824), 
NDOB_PSEPU  (P0A110), NDOB_PSEU8  (P0A111), PHT3_PSEPU  (Q05183), 
POBA_PSEPS  (Q52185), VANA_PSES9  (P12609), VANA_PSEUH  (O05616), 
XYLX_PSEPU  (P23099), YEAW_ECO57  (P0ABR8), YEAW_ECOLI  (P0ABR7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
HCAE_PHOLL  (Q7N4W0)
False positive hits (sequences which do not belong to the set under consideration):
CAO_ARATH   (Q9MBA1), CAO_CHLRE   (Q9ZWM5), CAO_DUNSA   (Q9XJ38), 
CAO_ORYSJ   (Q8S7E1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1EG9; 1NDO; 1O7G; 1O7H; 1O7M; 1O7N; 1O7P; 1O7W; 1UUV; 1UUW; 2HMJ; 2HMK; 2HML; 2HMM; 2HMN; 2HMO; 2XR8; 2XRX; 2XSH; 2XSO; 2YFI; 2YFJ; 3EN1; 3EQQ; 3GZX; 3GZY;

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