Entry: PS00570

General information about the entry
Entry name RING_HYDROXYL_ALPHA
Accession number PS00570
Entry type PATTERN
Date DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00493
Name and characterization of the entry
DescriptionBacterial ring hydroxylating dioxygenases alpha-subunit signature.
Pattern C-x-H-R-[GAR]-x(7,8)-[GEKVI]-[NERAQ]-x(4,5)-C-x-[FY]-H.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 38 hits in 38 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 34 hits in 34 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 89.47 %
  • Recall (true hits / (true hits + false negatives)): 97.14 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,iron_sulfur
  • `Interesting' site in the pattern: 3,iron_sulfur
  • `Interesting' site in the pattern: 10,iron_sulfur
  • `Interesting' site in the pattern: 13,iron_sulfur
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ANDAC_BURCE (Q84BZ3), ANTDA_ACIAD (O85673), BEDC1_PSEPU (Q07944), 
BENA_ACIAD  (P07769), BNZA_PSEP1  (A5W4F2), BNZA_PSEPU  (P0C618), 
BPHA1_PSES1 (Q52438), BPHA_BURXL  (P37333), BPHA_COMTE  (Q46372), 
BPHA_PSEPS  (Q52028), CBAA_COMTE  (Q44256), CBDA_BURCE  (Q51601), 
HCAE_ECO57  (P0ABR6), HCAE_ECOHS  (A8A344), HCAE_ECOLI  (P0ABR5), 
HCAE_SHIBS  (Q31XV2), HCAE_SHIF8  (Q0T1Y1), HCAE_SHIFL  (Q83K39), 
HCAE_SHISS  (Q3YZ15), NAGG_RALSP  (O52379), NDOB_PSEAI  (Q51494), 
NDOB_PSEFL  (O07824), NDOB_PSEPU  (P0A110), NDOB_PSEU8  (P0A111), 
NDOB_RALSP  (O52382), PHT3_PSEPU  (Q05183), POBA_PSEPS  (Q52185), 
TPDA1_COMSP (Q3C1E3), TPDA2_COMSP (Q3C1D5), VANA_PSES9  (P12609), 
VANA_PSEUH  (O05616), XYLX_PSEPU  (P23099), YEAW_ECO57  (P0ABR8), 
YEAW_ECOLI  (P0ABR7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
HCAE_PHOLL  (Q7N4W0)
False positive hits (sequences which do not belong to the set under consideration):
CAO_ARATH   (Q9MBA1), CAO_CHLRE   (Q9ZWM5), CAO_DUNSA   (Q9XJ38), 
CAO_ORYSJ   (Q8S7E1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1EG9; 1NDO; 1O7G; 1O7H; 1O7M; 1O7N; 1O7P; 1O7W; 1UUV; 1UUW; 2HMJ; 2HMK; 2HML; 2HMM; 2HMN; 2HMO; 2XR8; 2XRX; 2XSH; 2XSO; 2YFI; 2YFJ; 2YFL; 3EN1; 3EQQ; 3GZX; 3GZY;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or