Entry: PS00578

General information about the entry

Entry name [info] RIBOSOMAL_S6E
Accession [info] PS00578
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00500

Name and characterization of the entry

Description [info] Ribosomal protein S6e signature.
Pattern [info]
[LIVM]-[STAMR]-G-G-x-[DG]-x(2)-G-x-[PV]-M.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 78 in 78 different sequences
Number of true positive hits 75 in 75 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 17
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 96.15 %
Recall (true positives / (true positives + false negatives)) 81.52 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
75 sequences

RS62_ARATH  (P51430    ), RS6A_SCHPO  (P05752    ), RS6A_YEAST  (P0CX37    ), 
RS6B_SCHPO  (Q9C0Z7    ), RS6B_YEAST  (P0CX38    ), RS6E_AERPE  (Q9Y9B6    ), 
RS6E_ARCFU  (O29739    ), RS6E_CALMQ  (A8MA52    ), RS6E_HALLT  (B9LR51    ), 
RS6E_HALMA  (P21509    ), RS6E_HALS3  (B0R815    ), RS6E_HALSA  (Q9HMJ5    ), 
RS6E_HALWD  (Q18DP5    ), RS6E_HYPBU  (A2BJZ7    ), RS6E_METAC  (Q8TQL4    ), 
RS6E_METAR  (Q0W8B4    ), RS6E_METBF  (Q466D6    ), RS6E_METBU  (Q12Z92    ), 
RS6E_METJA  (P54067    ), RS6E_METKA  (Q8TVE6    ), RS6E_METMA  (Q8PU79    ), 
RS6E_METS5  (A4YIY0    ), RS6E_METST  (Q2NGM7    ), RS6E_METTH  (O26360    ), 
RS6E_NANEQ  (Q74MJ5    ), RS6E_NATPD  (Q3ISW0    ), RS6E_NITMS  (A9A110    ), 
RS6E_PYRAB  (Q9UYS3    ), RS6E_PYRAE  (Q8ZX25    ), RS6E_PYRAR  (A4WIK0    ), 
RS6E_PYRCJ  (A3MUD0    ), RS6E_PYRFU  (Q8U3H8    ), RS6E_PYRHO  (O58349    ), 
RS6E_PYRIL  (A1RUW1    ), RS6E_PYRNV  (B1YCP4    ), RS6E_STAMF  (A3DMS1    ), 
RS6E_SULIA  (C3MZ52    ), RS6E_SULIK  (C4KID0    ), RS6E_SULIL  (C3MR04    ), 
RS6E_SULIM  (C3MWZ2    ), RS6E_SULIY  (C3N772    ), RS6E_SULSO  (Q980A6    ), 
RS6E_SULTO  (Q975N7    ), RS6E_THEKO  (Q5JDK8    ), RS6E_THEON  (B6YW70    ), 
RS6E_THESM  (C6A2D7    ), RS6_AEDAE   (Q9U761    ), RS6_AEDAL   (Q9U762    ), 
RS6_APLCA   (Q9BMX5    ), RS6_ASHGO   (Q74ZK3    ), RS6_ASPOF   (Q9M3V8    ), 
RS6_BOVIN   (Q5E995    ), RS6_BRAFL   (O01727    ), RS6_CANGA   (Q6FJH3    ), 
RS6_CHICK   (P47838    ), RS6_DEBHA   (Q6BXH8    ), RS6_DICDI   (Q54UU3    ), 
RS6_DROME   (P29327    ), RS6_ENCCU   (Q8SRY0    ), RS6_GLOMM   (Q2PQM1    ), 
RS6_HUMAN   (P62753    ), RS6_ICTPU   (Q90YR8    ), RS6_KLULA   (Q6CM04    ), 
RS6_KLUMA   (P41798    ), RS6_LEIIN   (O44012    ), RS6_LEIMA   (Q9NE83    ), 
RS6_MACFA   (Q4R4K6    ), RS6_MANSE   (Q94624    ), RS6_MOUSE   (P62754    ), 
RS6_ONCMY   (Q9YGF2    ), RS6_RAT     (P62755    ), RS6_SPOFR   (Q95V32    ), 
RS6_TOBAC   (P29345    ), RS6_XENLA   (P39017    ), RS6_YARLI   (Q6C169    )
» more

UniProtKB/Swiss-Prot
False negative sequences
17 sequences

RS61_ARATH  (O48549    ), RS6E_METB6  (A7IAP8    ), RS6E_METHJ  (Q2FU50    ), 
RS6E_METLZ  (A2STM7    ), RS6E_METM5  (A4FWX0    ), RS6E_METM6  (A9AAA5    ), 
RS6E_METM7  (A6VGE7    ), RS6E_METMJ  (A3CSP5    ), RS6E_METMP  (Q6LXY7    ), 
RS6E_METPE  (B8GJR6    ), RS6E_METS3  (A5UJM8    ), RS6E_PICTO  (Q6L1H6    ), 
RS6E_SULAC  (Q4JAI1    ), RS6E_THEAC  (Q9HLA6    ), RS6E_THEGJ  (C5A7C4    ), 
RS6E_THEVO  (Q978W7    ), RS6_CAEEL   (Q9NEN6    )
» more

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

BCL9L_HUMAN (Q86UU0    ), BCL9L_MOUSE (Q67FY2    ), Y886_HAEIN  (P44069    )

		
PDB
[Detailed view]
7 PDB

3J16; 3J80; 3J81; 3JAM; 5A2Q; 5FLX; 5IT9

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