Entry: PS00623

General information about the entry

Entry name [info] GMC_OXRED_1
Accession [info] PS00623
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00543

Name and characterization of the entry

Description [info] GMC oxidoreductases signature 1.
Pattern [info]
[GA]-[RKNC]-x-[LIVW]-G(2)-[GST](2)-x-[LIVM]-[NH]-x(3)-[FYWA]-x(2)-[PAG]-
x(5)-[DNESHQA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 151 in 151 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 38
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 79.89 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
151 sequences

ALKJ_PSEOL  (Q00593), ALKJ_PSEPU  (Q9WWW2), ALOX1_PICP7 (F2QY27), 
ALOX1_PICPG (P04842), ALOX2_PICP7 (F2R038), ALOX2_PICPG (C4R702), 
ALOX_CANBO  (Q00922), ALOX_PICAN  (P04841), BETA1_CHRSD (Q1QXE1), 
BETA2_CHRSD (Q9L4K0), BETA_ACIAD  (Q6FDF9), BETA_ACIB3  (B7GYG5), 
BETA_ACIB5  (B7I895), BETA_ACIBC  (B2HV79), BETA_ACIBS  (B0VST3), 
BETA_ACIBY  (B0V945), BETA_AGRFC  (Q8UH55), BETA_AGRRK  (B9JBA2), 
BETA_BRUC2  (A9M9H8), BETA_BRUME  (Q8YFY2), BETA_BRUO2  (A5VPA6), 
BETA_BRUSI  (B0CKN4), BETA_BRUSU  (Q8G1Z8), BETA_BURA4  (B1Z034), 
BETA_BURCA  (Q1BQE2), BETA_BURCC  (B1K707), BETA_BURCH  (A0B2F7), 
BETA_BURCJ  (B4EHJ2), BETA_BURCM  (Q0B711), BETA_BURL3  (Q39A44), 
BETA_BURM1  (A9AMZ9), BETA_BURMA  (Q62CH8), BETA_BURP1  (Q3JLL7), 
BETA_BURP8  (B2JS89), BETA_BURPP  (B2TCJ8), BETA_BURPS  (Q63KK7), 
BETA_BURTA  (Q2T6D0), BETA_BURVG  (A4JJG6), BETA_BURXL  (Q13NG7), 
BETA_CITK8  (A8AJN0), BETA_CROS8  (A7MFA8), BETA_ECO24  (A7ZI50), 
BETA_ECO27  (B7UJG4), BETA_ECO45  (B7MCD0), BETA_ECO55  (B7L439), 
BETA_ECO57  (Q8X6C6), BETA_ECO5E  (B5Z1R0), BETA_ECO8A  (B7M2V5), 
BETA_ECODH  (B1XE52), BETA_ECOHS  (A7ZWV4), BETA_ECOL5  (Q0TKW1), 
BETA_ECOL6  (Q8FKI9), BETA_ECOLC  (B1J0W6), BETA_ECOLI  (P17444), 
BETA_ECOLU  (B7N8L3), BETA_ECOSE  (B6I074), BETA_ECOSM  (B1LIJ7), 
BETA_ECOUT  (Q1RFM3), BETA_KLEP3  (B5Y008), BETA_KLEP7  (A6T613), 
BETA_OCHA4  (A6X2G7), BETA_PECAS  (Q6D6D9), BETA_PECCP  (C6DKY4), 
BETA_PHOPR  (Q6LGH5), BETA_PROMH  (B4EX94), BETA_PSE14  (Q48CM7), 
BETA_PSEA7  (A6VEI3), BETA_PSEA8  (B7V5R3), BETA_PSEAB  (Q02DZ0), 
BETA_PSEAE  (Q9HTJ2), BETA_PSEE4  (Q1IG70), BETA_PSEF5  (Q4K4K7), 
BETA_PSEFS  (C3K3D3), BETA_PSEMY  (A4XPI5), BETA_PSEP1  (A5WA97), 
BETA_PSEPF  (Q3K5H3), BETA_PSEPG  (B0KN19), BETA_PSEPK  (Q88CW6), 
BETA_PSESM  (Q88AE7), BETA_PSEU2  (Q4ZM63), BETA_RHIE6  (B3PTE0), 
BETA_RHIEC  (Q2KB43), BETA_RHIL3  (Q1MJU4), BETA_RHILO  (Q985M5), 
BETA_RHILW  (B5ZUG2), BETA_RHIME  (P54223), BETA_RHISN  (C3MIE4), 
BETA_SERP5  (A8GBX9), BETA_SHIF8  (Q0T7N0), BETA_SINMW  (A6U6Y8), 
BETA_STAA1  (A7X6Z3), BETA_STAA2  (A6U4Z2), BETA_STAA3  (Q2FDP9), 
BETA_STAA8  (Q2FV11), BETA_STAA9  (A5IW37), BETA_STAAB  (Q2YWJ5), 
BETA_STAAC  (Q5HCU1), BETA_STAAE  (A6QK99), BETA_STAAM  (P60336), 
BETA_STAAN  (P60337), BETA_STAAR  (Q6GDJ1), BETA_STAAS  (Q6G664), 
BETA_STAAT  (A8Z5A4), BETA_STAAW  (Q8NUM0), BETA_STAEQ  (Q5HL11), 
BETA_STAES  (Q8CMY2), BETA_STAHJ  (Q4L9D7), BETA_STAS1  (Q4A0Q1), 
BETA_STAXY  (Q9X2M2), BETA_STRM5  (B4SHV9), BETA_STRMK  (B2FQ89), 
BETA_VIBCB  (A7N2P9), BETA_VIBVU  (Q8D3K2), BETA_VIBVY  (Q7MF12), 
BETA_XANAC  (Q8PPG8), BETA_XANC5  (Q3BXK8), BETA_XANC8  (Q4UYN5), 
BETA_XANCB  (B0RNU9), BETA_XANCP  (Q8P5D7), BETA_YERP3  (A7FKL6), 
BETA_YERPA  (Q1C932), BETA_YERPB  (B2K8U4), BETA_YERPE  (Q8ZGW0), 
BETA_YERPN  (Q1CFR7), BETA_YERPP  (A4TNP2), BETA_YERPS  (Q66D54), 
BETA_YERPY  (B1JSR0), CDH_PHACH   (Q01738), CHDH_HUMAN  (Q8NE62), 
CHDH_MOUSE  (Q8BJ64), CHDH_RAT    (Q6UPE0), CHOD_BREST  (P22637), 
CHOD_STRS0  (P12676), DHGL_DROME  (P18173), DHGL_DROPS  (P18172), 
GOX_ASPNG   (P13006), GOX_PENAG   (P81156), GOX_TALFL   (Q92452), 
MDL1_PRUDU  (O24243), MDL1_PRUSE  (P52706), MDL2_PRUDU  (Q945K2), 
MDL2_PRUSE  (O50048), MDL3_PRUSE  (P52707), MDLL_ARATH  (Q9SSM2), 
PNO_MICLT   (Q9AJD6), SDH_GLUOY   (Q47944), Y1279_MYCTO (P9WMV4), 
Y1279_MYCTU (P9WMV5), Y1310_MYCBO (P64264), Y4NJ_RHISN  (P55582), 
YTH2_RHOER  (P46371)
» More

UniProtKB/Swiss-Prot
False negative sequences
38 sequences

AFLK_ASPPA  (Q12062), CHOD_MYCTO  (P9WMV8), CHOD_MYCTU  (P9WMV9), 
CHOX_ARTGO  (Q7X2H8), FAO1_ARATH  (Q9ZWB9), FAO1_LOTJA  (B5WWZ8), 
FAO2_LOTJA  (B5WWZ9), FAO3_ARATH  (Q9LW56), FAO4A_ARATH (O65709), 
FAO4B_ARATH (Q94BP3), FDHL_GLUJA  (M1VMF7), GADH1_PANCY (O34214), 
HTH_ARATH   (Q9S746), LIVQ_STRLV  (Q2MF66), MDL4_PRUSE  (O82784), 
NEOG_STRFR  (Q53U15), NINAG_DROME (Q9VGP2), P2OX_EMENI  (Q5B2E9), 
P2OX_LYOSH  (Q75ZP8), P2OX_PENSG  (Q8J136), P2OX_PHACH  (Q6QWR1), 
P2OX_PHLGI  (Q6UG02), P2OX_TRAHI  (P59097), P2OX_TRAPU  (Q5G234), 
P2OX_TRAVE  (P79076), P2OX_TRIMT  (Q8J2V8), PDH1_AGABI  (Q3L1D1), 
PDH1_AGACM  (V5NDL4), PDH1_AGAXA  (V5NC32), PDH1_LEUMG  (Q3L245), 
PDH2_LEUMG  (Q3L243), PDH3_LEUMG  (Q0R4L2), Y492_MYCTO  (P9WMV6), 
Y492_MYCTU  (P9WMV7), YL128_MIMIV (Q5UPK7), YL894_MIMIV (Q5UQZ1), 
YR135_MIMIV (Q5UPL2), YR832_MIMIV (Q5UQH9)
» More

PDB
[Detailed view]
32 PDB

1B4V; 1B8S; 1CBO; 1CC2; 1CF3; 1COY; 1GAL; 1GPE; 1IJH; 1JU2; 1KDG; 1MXT; 1N1P; 1N4U; 1N4V; 1N4W; 1NAA; 2GEW; 3B3R; 3B6D; 3CNJ; 3COX; 3GDN; 3GDP; 3GYI; 3GYJ; 3QVP; 3QVR; 4REK; 4U2L; 4U2S; 4U2T
» More

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