Entry: PS00659

General information about the entry
Entry name GLYCOSYL_HYDROL_F5
Accession number PS00659
Entry type PATTERN
Date JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00565
Name and characterization of the entry
DescriptionGlycosyl hydrolases family 5 signature.
Pattern [LIV]-[LIVMFYWGA](2)-[DNEQG]-[LIVMGST]-{SENR}-N-E-[PV]-[RHDNSTLIVFY].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 170 hits in 170 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 77 hits in 77 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 93 hits in 93 different sequences
  • Number of known missed hits: 69
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 5
  • Precision (true hits / (true hits + false positives)): 45.29 %
  • Recall (true hits / (true hits + false negatives)): 52.74 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 7,active_site(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
EGCSE_CYANO (Q9GV16), EGCSE_HYDVU (Q6L6S1), EXG1_HANAN  (O93939), 
EXG1_SCHPO  (Q9URU6), EXG1_YEAST  (P23776), EXG2_HANAN  (O93983), 
EXG2_YEAST  (P52911), EXG3_SCHPO  (O74799), EXG_CANAL   (P29717), 
EXG_CANOL   (Q8NKF9), EXG_KLULA   (Q12628), EXG_LACK1   (Q875R9), 
EXG_PICAN   (Q12626), EXG_SACBA   (Q876J3), EXG_SCHOC   (Q12700), 
EXG_YARLI   (Q12725), GUN1_ACIC1  (P54583), GUN1_BACIU  (P07983), 
GUN1_BACS4  (P06566), GUN1_BUTFI  (P20847), GUN1_CRYFL  (Q04469), 
GUN1_RUMAL  (P16216), GUN2_BACS4  (P06565), GUN2_BACSU  (P10475), 
GUN2_HYPJE  (P07982), GUN3_BACIU  (P23549), GUN3_BACS4  (P19570), 
GUN3_FIBSS  (P14250), GUN4_RUMAL  (Q07940), GUN5_BACAG  (O85465), 
GUN5_THEFU  (Q01786), GUNA_BUTFI  (P22541), GUNA_CLOCE  (P17901), 
GUNA_CLOLO  (P54937), GUNA_PAEBA  (O08342), GUNA_RUMAL  (P23660), 
GUNA_RUMFL  (P16169), GUNA_STRLI  (P27035), GUNA_XANCP  (P19487), 
GUNB_CALSA  (P10474), GUNB_CLOC7  (P28621), GUNB_CLOTH  (P04956), 
GUNB_NEOPA  (Q12647), GUNB_PAELA  (P23550), GUNB_RUMAL  (P23661), 
GUNC_CELJU  (P27033), GUNC_CLOSF  (P23340), GUNC_CLOTH  (A3DJ77), 
GUNC_CLOTM  (P0C2S3), GUND_CELFI  (P50400), GUND_CLOC7  (P28623), 
GUND_CLOCE  (P25472), GUNE_CLOTM  (P10477), GUNG_CLOTH  (Q05332), 
GUNH_CLOTH  (P16218), GUNN_ERWCR  (Q59394), GUNV_PECCC  (Q47096), 
GUNW_PECSS  (Q59395), GUNZ_DICD3  (P07103), GUN_BACS1   (P06564), 
GUN_BACS6   (P19424), GUN_CLOSA   (P15704), GUN_PAEPO   (P23548), 
GUN_RALSL   (P17974), GUN_RALSO   (P58599), GUN_ROBSP   (P23044), 
MAN1_ORYSJ  (Q0JKM9), MAN2_ORYSJ  (Q0JJD4), MAN7_ORYSJ  (Q2RBB1), 
MAN8_ORYSJ  (Q0IQJ7), MANA_STRLI  (P51529), MANB_CALSA  (P22533), 
SPR1_SACBA  (Q876J2), SPR1_YEAST  (P32603), XYNA_THESA  (P36917), 
XYNX_CLOTM  (P38535), YIS7_YEAST  (P40566)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
6GAL_HYPRU  (Q76FP5), EXG2_SCHPO  (Q10444), EXGA_ASPCL  (A1CRV0), 
EXGA_ASPFC  (B0XN12), EXGA_ASPFN  (B8N151), EXGA_ASPFU  (Q4WK60), 
EXGA_ASPNC  (A2RAR6), EXGA_ASPOR  (Q7Z9L3), EXGA_ASPTN  (Q0CR35), 
EXGA_EMENI  (Q5B5X8), EXGA_NEOFI  (A1D4Q5), EXGB_ASPFC  (B0XRX9), 
EXGB_ASPFN  (B8NBJ4), EXGB_ASPFU  (Q4X1N4), EXGB_ASPOR  (Q2TZQ9), 
EXGB_ASPTN  (Q0C8Z0), EXGB_EMENI  (Q5B6Q3), EXGB_NEOFI  (A1DGM6), 
EXGD_ASPCL  (A1CTI3), EXGD_ASPFC  (B0Y7W2), EXGD_ASPFN  (B8NNK9), 
EXGD_ASPFU  (Q4WMP0), EXGD_ASPNC  (A2QX52), EXGD_ASPOR  (Q2UMV7), 
EXGD_ASPTN  (Q0CHZ8), EXGD_EMENI  (Q5AVZ7), EXGD_NEOFI  (A1DMX4), 
EXG_BLUGR   (Q96V64), GUN3_HUMIN  (Q12624), MAN1_ARATH  (Q9FZ29), 
MAN1_SOLLC  (O48540), MAN2_ARATH  (Q7Y223), MAN2_SOLLC  (Q9FZ03), 
MAN3_ARATH  (Q9SG94), MAN3_ORYSJ  (Q0DM48), MAN3_SOLLC  (Q9FUQ6), 
MAN4_ARATH  (Q9SG95), MAN4_ORYSJ  (Q10B67), MAN4_SOLLC  (Q8L5J1), 
MAN5_ARATH  (Q9M0H6), MAN5_ORYSJ  (Q5W6G0), MAN5_SOLLC  (Q6YM50), 
MAN6_ARATH  (Q9LZV3), MAN6_ORYSJ  (Q0DCM5), MAN7_ARATH  (Q9FJZ3), 
MAN9_ORYSJ  (Q6Z310), MANA1_ASPTN (Q0CCD0), MANA2_ASPTN (Q0CUG5), 
MANA_ASPAC  (Q00012), MANA_ASPCL  (A1CGC6), MANA_ASPFN  (B8NVK8), 
MANA_ASPNC  (A2QKT4), MANA_ASPOR  (Q2TXJ2), MANA_EMENI  (Q5B7X2), 
MANA_MYTED  (Q8WPJ2), MANA_NEOFI  (A1D8Y6), MANB_EMENI  (Q5B833), 
MANC_ASPTN  (Q0C8J3), MANC_EMENI  (Q5AZ53), MAND_EMENI  (Q5AVP1), 
MANF_ASPCL  (A1C8U0), MANF_ASPFC  (B0Y9E7), MANF_ASPFN  (B8NIV9), 
MANF_ASPFU  (Q4WBS1), MANF_ASPOR  (Q2U2I3), MANF_EMENI  (Q5AR04), 
MANF_NEOFI  (A1DBV1), MANP_ARATH  (Q9LW44), YBQ6_YEAST  (P38081)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
EXG_PSEMZ   (P85924), GUN1_ACRSP  (P82288), GUNA_GLOTR  (P84194), 
GUNB_GLOTR  (P84196), GUN_SCHCO   (P81190)
False positive hits (sequences which do not belong to the set under consideration):
AGAR_ALTAT  (P13734), AL4A1_DANRE (Q7SY23), AMPA_HELHP  (Q7VGF0), 
ARCA_PSEPK  (Q88P52), ARCA_PSEPU  (P41142), ASPL2_ARATH (Q9S9K4), 
ATG4_ASHGO  (Q75E61), ATPF1_NITHX (Q1QRI1), CO041_BOVIN (Q5E9S8), 
CO041_HUMAN (Q9Y2V0), CO041_MOUSE (Q3U4G0), CO041_XENLA (Q6NRW5), 
CO041_XENTR (Q28HL3), COX1_BACP3  (P16262), CYAA_SCHPO  (P14605), 
EXOC6_ARATH (Q9LXX6), F16A1_BURP8 (B2JEJ7), F16A1_BURXL (Q13V64), 
F16A3_PSEHT (Q3ICJ5), F16PA_ACIAD (Q6F982), F16PA_ACISJ (A1W9H6), 
F16PA_BURPP (B2T699), F16PA_BURS3 (Q39IJ4), F16PA_CAUSK (B0T0R1), 
F16PA_CELJU (B3PGC8), F16PA_HERAR (A4G2P0), F16PA_HERSE (A2RQ29), 
F16PA_IDILO (Q5QVR9), F16PA_PSYA2 (Q4FUA6), F16PA_PSYCK (Q1QDE0), 
F16PA_RALPJ (B2U8C4), F16PA_RALSO (Q8XXI7), F16PA_SHEAM (A1S351), 
F16PA_SHEB9 (A9L375), F16PA_SHEDO (Q12JW2), F16PA_SHEFN (Q088C3), 
F16PA_SHEHH (B0TTL6), F16PA_SHELP (A3QAZ7), F16PA_SHEON (Q8EAB6), 
F16PA_SHEPA (A8H0H1), F16PA_SHESA (A0KSW7), F16PA_SHESH (A8FRF1), 
F16PA_SHESM (Q0HMI8), F16PA_SHESR (Q0HRA0), F16PA_SHESW (A1RNR2), 
G6PI_PSEFL  (Q848I4), G6PI_PSEPF  (Q3K6Q4), GCSP_BACFN  (Q5LDN2), 
GCSP_BACFR  (Q64UQ7), ILVB2_BRANA (P14874), JHD1_SCHPO  (O94603), 
MACF1_HUMAN (Q9UPN3), MACF1_MOUSE (Q9QXZ0), MACF1_RAT   (D3ZHV2), 
MICA1_DANRE (E7F9T0), MYOD_TOXGO  (Q9XYF6), NADL2_HUMAN (Q58DX5), 
OBSCN_HUMAN (Q5VST9), PAC_ARTVI   (P31956), PAC_BACME   (Q60136), 
PNPT1_HUMAN (Q8TCS8), PNPT1_MOUSE (Q8K1R3), PNPT1_PONAB (Q5RCW2), 
PROB_CLOAB  (Q97E63), PRUNE_BOVIN (Q5E9Y6), PRUNE_HUMAN (Q86TP1), 
PRUNE_MOUSE (Q8BIW1), PRUNE_RAT   (Q6AYG3), PSA_NAKMY   (C8XAQ3), 
PTCD3_DANRE (Q32LU7), PURL_SULSO  (Q9UX24), RECR_AZOC5  (A8IGX4), 
RFT1_CANGA  (Q6FPE8), RL25_RUEPO  (Q5LV90), RNH2_THEPD  (A1RYM0), 
RPPH_BORBR  (Q7WFP0), RPPH_BORPA  (Q7W482), RPPH_BORPE  (Q7VTZ7), 
RPPH_NITMU  (Q2YBW4), RUVC_THIDA  (Q3SGT0), SDK2_MOUSE  (Q6V4S5), 
SP100_MUSCR (O35893), SYFB_PROMP  (Q7V1J8), TEGU_HHV7J  (P52362), 
Y1530_RUBXD (Q1AVT6), Y2148_CALS8 (A4XLE5), Y2677_OCEIH (Q8EN13), 
Y526_SYNWW  (Q0AZJ4), Y5392_ARATH (Q9FID6), YB0G_SCHPO  (P87157), 
YBX7_SCHPO  (Q10201), YCSF_BACSU  (P42963), YL786_MIMIV (Q5UPR9)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1A3H; 1CEC; 1CZ1; 1E5J; 1ECE; 1EDG; 1EGZ; 1EQC; 1EQP; 1G01; 1G0C; 1H11; 1H2J; 1H4P; 1H5V; 1HF6; 1OCQ; 1QHZ; 1QI0; 1QI2; 1VRX; 1W3K; 1W3L; 2A3H; 2CKR; 2CKS; 2PB1; 2PBO; 2PC8; 2PF0; 2V38; 3A3H; 3N9K; 3NDY; 3NDZ; 3O6A; 3PZT; 3PZU; 3PZV; 3QR3; 4A3H; 5A3H; 6A3H; 7A3H; 8A3H;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission


If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or