Entry: PS00709

General information about the entry

Entry name [info] RIBOSOMAL_L30E_1
Accession [info] PS00709
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); APR-2006 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00588

Name and characterization of the entry

Description [info] Ribosomal protein L30e signature 1.
Pattern [info]
[STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-[GS]-x(2)-[KQ]-x-
[LIVM](3).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 47 in 47 different sequences
Number of true positive hits 46 in 46 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 17
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.87 %
Recall (true positives / (true positives + false negatives)) 73.02 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
46 sequences

RL301_ARATH (Q9C8F7    ), RL302_ARATH (Q8VZ19    ), RL303_ARATH (Q9LSA3    ), 
RL30A_SCHPO (P52808    ), RL30B_SCHPO (Q9UTP0    ), RL30E_AERPE (Q9YAU3    ), 
RL30E_ARCFU (O28389    ), RL30E_METJA (P54061    ), RL30E_METKA (Q8TXJ0    ), 
RL30E_METM5 (A4FWF4    ), RL30E_METM6 (A9A9U8    ), RL30E_METM7 (A6VGV1    ), 
RL30E_METMP (Q6LXI6    ), RL30E_METTH (O27127    ), RL30E_METVS (P14025    ), 
RL30E_PYRAB (Q9V112    ), RL30E_PYRFU (Q8U0M6    ), RL30E_PYRHO (O74018    ), 
RL30E_SULAC (P11522    ), RL30E_SULSO (Q980R3    ), RL30E_SULTO (P58376    ), 
RL30E_THECE (P29160    ), RL30E_THESM (C6A1G2    ), RL30_ASHGO  (Q752U5    ), 
RL30_BOVIN  (Q3T0D5    ), RL30_BRABE  (P58374    ), RL30_CANGA  (Q6FXZ0    ), 
RL30_CHICK  (P67883    ), RL30_DICDI  (Q55BS9    ), RL30_HUMAN  (P62888    ), 
RL30_ICTPU  (P58372    ), RL30_KLULA  (P38664    ), RL30_LEIMA  (P39095    ), 
RL30_LUPLU  (O49884    ), RL30_MACFA  (Q76KA2    ), RL30_MAIZE  (O48558    ), 
RL30_MOUSE  (P62889    ), RL30_NEUCR  (Q7S7F1    ), RL30_OPHHA  (P67884    ), 
RL30_ORYSJ  (Q9SDG6    ), RL30_RAT    (P62890    ), RL30_SPOFR  (P58375    ), 
RL30_TRYBB  (P49153    ), RL30_WHEAT  (Q5I7K9    ), RL30_YARLI  (Q6C4U7    ), 
RL30_YEAST  (P14120    )
» more

UniProtKB/Swiss-Prot
False negative sequences
17 sequences

RL30E_CALMQ (A8MB78    ), RL30E_METAC (Q8TRB9    ), RL30E_METB6 (A7I9N4    ), 
RL30E_METHJ (Q2FPJ8    ), RL30E_METMA (Q8PUR3    ), RL30E_METPE (B8GDW0    ), 
RL30E_METS3 (A5ULN4    ), RL30E_METST (Q2NEK6    ), RL30E_METTP (A0B560    ), 
RL30E_PYRAE (Q8ZYQ6    ), RL30E_PYRCJ (A3MXZ2    ), RL30E_PYRIL (A1RSE6    ), 
RL30E_PYRNV (B1YC27    ), RL30E_THEGJ (C5A206    ), RL30E_THEKO (Q5JE35    ), 
RL30_EUPES  (Q9M5M6    ), RL30_TETTS  (P0DJ59    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

RXL7_BACSU  (P46350    )

		
PDB
[Detailed view]
20 PDB

1CK2; 1CN7; 1GO0; 1GO1; 1H7M; 1NMU; 1T0K; 1W3E; 1W40; 1W41; 1W42; 1YSH; 2BO1; 3CPQ; 3LFO; 3N4Y; 3N4Z; 3RA5; 3RA6; 3VI6
» more

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