Entry: PS00709

General information about the entry
Entry name RIBOSOMAL_L30E_1
Accession number PS00709
Entry type PATTERN
Date DEC-1992 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00588
Name and characterization of the entry
DescriptionRibosomal protein L30e signature 1.
Pattern [STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-[GS]-x(2)-[KQ]-x- [LIVM](3).
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 47 hits in 47 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 46 hits in 46 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 17
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 97.87 %
  • Recall (true hits / (true hits + false negatives)): 73.02 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RL301_ARATH (Q9C8F7), RL302_ARATH (Q8VZ19), RL303_ARATH (Q9LSA3), 
RL30A_SCHPO (P52808), RL30B_SCHPO (Q9UTP0), RL30E_AERPE (Q9YAU3), 
RL30E_ARCFU (O28389), RL30E_METJA (P54061), RL30E_METKA (Q8TXJ0), 
RL30E_METM5 (A4FWF4), RL30E_METM6 (A9A9U8), RL30E_METM7 (A6VGV1), 
RL30E_METMP (Q6LXI6), RL30E_METTH (O27127), RL30E_METVS (P14025), 
RL30E_PYRAB (Q9V112), RL30E_PYRFU (Q8U0M6), RL30E_PYRHO (O74018), 
RL30E_SULAC (P11522), RL30E_SULSO (Q980R3), RL30E_SULTO (P58376), 
RL30E_THECE (P29160), RL30E_THESM (C6A1G2), RL30_ASHGO  (Q752U5), 
RL30_BOVIN  (Q3T0D5), RL30_BRABE  (P58374), RL30_CANGA  (Q6FXZ0), 
RL30_CHICK  (P67883), RL30_DICDI  (Q55BS9), RL30_HUMAN  (P62888), 
RL30_ICTPU  (P58372), RL30_KLULA  (P38664), RL30_LEIMA  (P39095), 
RL30_LUPLU  (O49884), RL30_MACFA  (Q76KA2), RL30_MAIZE  (O48558), 
RL30_MOUSE  (P62889), RL30_NEUCR  (Q7S7F1), RL30_OPHHA  (P67884), 
RL30_ORYSJ  (Q9SDG6), RL30_RAT    (P62890), RL30_SPOFR  (P58375), 
RL30_TRYBB  (P49153), RL30_WHEAT  (Q5I7K9), RL30_YARLI  (Q6C4U7), 
RL30_YEAST  (P14120)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RL30E_CALMQ (A8MB78), RL30E_METAC (Q8TRB9), RL30E_METB6 (A7I9N4), 
RL30E_METHJ (Q2FPJ8), RL30E_METMA (Q8PUR3), RL30E_METPE (B8GDW0), 
RL30E_METS3 (A5ULN4), RL30E_METST (Q2NEK6), RL30E_METTP (A0B560), 
RL30E_PYRAE (Q8ZYQ6), RL30E_PYRCJ (A3MXZ2), RL30E_PYRIL (A1RSE6), 
RL30E_PYRKO (Q5JE35), RL30E_PYRNV (B1YC27), RL30E_THEGJ (C5A206), 
RL30_EUPES  (Q9M5M6), RL30_TETTS  (P0DJ59)
False positive hits (sequences which do not belong to the set under consideration):
RXL7_BACSU  (P46350)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1CK2; 1CN7; 1GO0; 1GO1; 1H7M; 1NMU; 1T0K; 1W3E; 1W40; 1W41; 1W42; 1YSH; 2BO1; 3CPQ; 3IZR; 3IZS; 3J21; 3LFO; 3N4Y; 3N4Z; 3O58; 3O5H; 3RA5; 3RA6; 3U5E; 3U5I; 3VI6; 4B6A;

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