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| PROSITE documentation PDOC00588 |
Ribosomal protein L30e signatures
Description:
A number of eukaryotic and archaebacterial ribosomal proteins can be grouped
on the basis of sequence similarities. One of these families consists of:
- Mammalian L30 [1].
- Leishmania major L30.
- Yeast YL32 [2].
- Bacillus subtilis hypothetical protein ybxF.
- Thermococcus celer L30 [3].
- A probable ribosomal protein (ORF 1) from Methanococcus vannielii [4].
- A probable ribosomal protein (ORF 104) from Sulfolobus acidocaldarius [5].
These proteins have 82 to 114 amino-acid residues. As signature patterns, we
selected two conserved regions; one located in the N-terminal region, the
other in the C-terminal.
Last update:
April 2006 / Pattern revised.
Technical section:
PROSITE methods (with tools and information) covered by this documentation:
| RIBOSOMAL_L30E_1, PS00709; Ribosomal protein L30e signature 1 (PATTERN) |
| Consensus pattern: |
[STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-[GS]-x(2)-[KQ]-x-[LIVM](3)
|
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
|
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| Matching PDB structures:
1CK2 1CN7 1GO0 1GO1 ... [ALL] |
| RIBOSOMAL_L30E_2, PS00993; Ribosomal protein L30e signature 2 (PATTERN) |
| Consensus pattern: |
[DE]-[LM]-G-[STALPD]-x(2)-[GK]-[KR]-x(6)-[LIVM]-x-[LIVM]-x-[DEN]-x-[GI]
|
| Sequences known to belong to this class detected by the pattern: |
ALL, except for Bacillus subtilis ybxF |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
|
|
|
| Matching PDB structures:
1CK2 1CN7 1GO0 1GO1 ... [ALL] |
References:
| 1 |
Authors | Nakanishi O., Oyanagi M., Kuwano Y., Tanaka T., Nakayama T., Mitsui H., Nabeshima Y., Ogata K. |
| Title | Molecular cloning and nucleotide sequences of cDNAs specific for rat liver ribosomal proteins S17 and L30. |
| Source | Gene 35:289-296(1985). |
| PubMed ID | 3840111 |
| 2 |
Authors | Dabeva M.D., Warner J.R. |
| Title | The yeast ribosomal protein L32 and its gene. |
| Source | J. Biol. Chem. 262:16055-16059(1987). |
| PubMed ID | 3316213 |
| 3 |
Authors | Klenk H.-P., Schwass V., Zillig W. |
| Title | Nucleotide sequence of the genes encoding the L30, S12 and S7 equivalent ribosomal proteins from the archaeum Thermococcus celer. |
| Source | Nucleic Acids Res. 19:6047-6047(1991). |
| PubMed ID | 1840672 |
| 4 |
Authors | Lechner K., Heller G., Boeck A. |
| Title | Organization and nucleotide sequence of a transcriptional unit of Methanococcus vannielii comprising genes for protein synthesis elongation factors and ribosomal proteins. |
| Source | J. Mol. Evol. 29:20-27(1989). |
| PubMed ID | 2475640 |
| 5 |
Authors | Puehler G., Lottspeich F., Zillig W. |
| Source | Nucleic Acids Res. 17:4517-4534(1989). |
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