Entry: PS00729

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General information about the entry

Entry name [info] AP_NUCLEASE_F2_1
Accession [info] PS00729
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00599

Name and characterization of the entry

Description [info] AP endonucleases family 2 signature 1.
Pattern [info]
H-[GSAD]-x-Y-[LIF]-[LIMN]-N-[LIVMFCAP]-[AGC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 236 in 236 different sequences
Number of true positive hits 231 in 231 different sequences
Number of 'unknown' hits
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 44
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 97.88 %
Recall (true positives / (true positives + false negatives)) 84.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
231 sequences

APN1_CAEEL  (Q10002), APN1_SCHPO  (P50525), APN1_YEAST  (P22936), 
END4_ACHLI  (A9NFH1), END4_ACTP2  (A3MZ76), END4_ACTP7  (B3H0M0), 
END4_ACTPJ  (B0BTA9), END4_AERHH  (A0KK26), END4_AERS4  (A4SMZ0), 
END4_ANOFW  (B7GH81), END4_AQUAE  (O67551), END4_ARCB4  (A8EWW1), 
END4_AYWBP  (Q2NJF9), END4_BACA2  (A7Z6S8), END4_BACAA  (C3P8J1), 
END4_BACAC  (C3LKW3), END4_BACAH  (A0RIQ8), END4_BACAN  (Q81LV1), 
END4_BACC0  (B7JN09), END4_BACC2  (B7IYD6), END4_BACC3  (C1ES07), 
END4_BACC4  (B7HCQ9), END4_BACC7  (B7HPI4), END4_BACCN  (A7GSY1), 
END4_BACCQ  (B9IY53), END4_BACCR  (Q818H3), END4_BACCZ  (Q634Q3), 
END4_BACFN  (Q5LG28), END4_BACFR  (Q64WY5), END4_BACHD  (Q9KD33), 
END4_BACHK  (Q6HDN3), END4_BACLD  (Q65HA0), END4_BACSK  (Q5WHC2), 
END4_BACSU  (P54476), END4_BACTN  (Q89YT0), END4_BACV8  (A6L330), 
END4_BACWK  (A9VHR4), END4_BUCA5  (B8D8T8), END4_BUCAI  (P57237), 
END4_BUCAP  (P59058), END4_BUCAT  (B8D742), END4_BUCBP  (P59496), 
END4_CAMC1  (A8Z6D9), END4_CAMC5  (A7GW36), END4_CAMHC  (A7I010), 
END4_CHLAA  (A9WII8), END4_CHLAB  (Q5L798), END4_CHLAD  (B8G418), 
END4_CHLCH  (Q3AT74), END4_CHLCV  (Q824X6), END4_CHLL2  (B3EEJ7), 
END4_CHLMU  (Q9PJB8), END4_CHLP8  (B3QQA9), END4_CHLPB  (B3ELV8), 
END4_CHLPN  (Q9Z7H3), END4_CHLSY  (B9LAM9), END4_CHLT2  (B0B8K0), 
END4_CHLTA  (Q3KL70), END4_CHLTB  (B0BA79), END4_CHLTE  (Q8KFL0), 
END4_CHLTR  (O84630), END4_CITK8  (A8AE66), END4_CLOPH  (A9KNS9), 
END4_DESAG  (Q30YP7), END4_DESAH  (C0QMG1), END4_DESOH  (A8ZSE7), 
END4_DESPS  (Q6ASE4), END4_DESVH  (Q72CQ9), END4_DESVV  (A1VEI5), 
END4_DICDI  (Q966U0), END4_ECO24  (A7ZNY3), END4_ECO27  (B7UFH5), 
END4_ECO45  (B7MF74), END4_ECO55  (B7LAI2), END4_ECO57  (P0A6C2), 
END4_ECO5E  (B5YWV0), END4_ECO7I  (B7NMX3), END4_ECO81  (B7MX24), 
END4_ECO8A  (B7M507), END4_ECOBW  (C4ZU09), END4_ECODH  (B1X857), 
END4_ECOHS  (A8A222), END4_ECOK1  (A1AD18), END4_ECOL5  (Q0TFT1), 
END4_ECOL6  (Q8FFU0), END4_ECOLC  (B1IYB0), END4_ECOLI  (P0A6C1), 
END4_ECOLU  (B7N5C2), END4_ECOSE  (B6I8L0), END4_ECOSM  (B1LKQ6), 
END4_ECOUT  (Q1R9R2), END4_EDWI9  (C5BCN2), END4_ENT38  (A4WCJ5), 
END4_ENTFA  (Q834D0), END4_ERWT9  (B2VIH1), END4_ESCF3  (B7LVB9), 
END4_EXIS2  (B1YL88), END4_GEOBB  (B5EAS8), END4_GEODF  (B9M4N1), 
END4_GEOKA  (Q5KX27), END4_GEOLS  (B3E325), END4_GEOSL  (Q74FS7), 
END4_GEOSM  (C6DYE3), END4_GEOSW  (C5D4R0), END4_GEOTN  (A4IR02), 
END4_HAEDU  (Q7VMC4), END4_HAEPS  (B8F7D1), END4_HALHL  (A1WXM0), 
END4_HALOH  (B8CW79), END4_HERA2  (A9B5N7), END4_KLEP3  (B5XP51), 
END4_KLEP7  (A6TBP4), END4_LACPL  (Q88VR2), END4_LISIN  (Q92BR0), 
END4_LISMC  (C1KV96), END4_LISMF  (Q71ZM1), END4_LISMO  (Q8Y756), 
END4_LISW6  (A0AIQ1), END4_LYSSC  (B1HTF6), END4_MAGSM  (A0L901), 
END4_METST  (Q2NFM3), END4_MYCBO  (P63536), END4_MYCBP  (A1KGF0), 
END4_MYCBT  (C1AL03), END4_MYCCT  (Q2ST57), END4_MYCGA  (Q7NBA9), 
END4_MYCGE  (P47477), END4_MYCH2  (Q601Y6), END4_MYCH7  (Q4A8V0), 
END4_MYCHJ  (Q4AAX4), END4_MYCLB  (B8ZSC5), END4_MYCLE  (P30770), 
END4_MYCMM  (B2HSJ8), END4_MYCMS  (Q6MUC7), END4_MYCPE  (Q8EWT2), 
END4_MYCPN  (P75457), END4_MYCPU  (Q98PU8), END4_MYCS5  (Q4A6S5), 
END4_MYCTA  (A5U056), END4_MYCTO  (P9WQ12), END4_MYCTU  (P9WQ13), 
END4_MYCUA  (A0PM27), END4_NAUPA  (B9L9K0), END4_NITSB  (A6Q1P1), 
END4_OCEIH  (Q8EPZ2), END4_ONYPE  (Q6YQC1), END4_PARD8  (A6LB99), 
END4_PARUW  (Q6MED0), END4_PECAS  (Q6D3L8), END4_PECCP  (C6DEL1), 
END4_PELLD  (Q3B5R5), END4_PELPB  (B4SE58), END4_PETMO  (A9BJ15), 
END4_PHOLL  (Q7N364), END4_PHOPR  (Q6LUP5), END4_PROA2  (B4S3I3), 
END4_PROMH  (B4ETA5), END4_PROVI  (A4SDE2), END4_SALA4  (B5EYQ5), 
END4_SALAR  (A9MK49), END4_SALCH  (Q57MD6), END4_SALDC  (B5FNK8), 
END4_SALEP  (B5R173), END4_SALG2  (B5RC42), END4_SALHS  (B4TAM6), 
END4_SALNS  (B4SY37), END4_SALPA  (Q5PE50), END4_SALPB  (A9N6I5), 
END4_SALPC  (C0Q0T7), END4_SALPK  (B5BE34), END4_SALSV  (B4TNR0), 
END4_SALTI  (Q8Z593), END4_SALTY  (Q8ZNK6), END4_SERP5  (A8GGT5), 
END4_SHIB3  (B2TVT4), END4_SHIBS  (Q31YW6), END4_SHIDS  (Q32EQ7), 
END4_SHIF8  (Q0T2W5), END4_SHIFL  (Q83QW6), END4_SHISS  (Q3Z047), 
END4_STAA1  (A7X2V2), END4_STAA2  (A6U229), END4_STAA3  (Q2FGG6), 
END4_STAA8  (Q2FY16), END4_STAA9  (A5IT85), END4_STAAB  (Q2YT22), 
END4_STAAC  (Q5HFK3), END4_STAAE  (A6QHA0), END4_STAAM  (P63537), 
END4_STAAN  (P63538), END4_STAAR  (Q6GGE2), END4_STAAS  (Q6G909), 
END4_STAAT  (A8Z497), END4_STAAW  (P63539), END4_STACT  (B9DNM8), 
END4_STAEQ  (Q5HNZ1), END4_STAES  (Q8CP25), END4_STAHJ  (Q4L6Q7), 
END4_STAS1  (Q49Y00), END4_STRAW  (Q82AG6), END4_STRCO  (Q9S2N2), 
END4_SULDN  (Q30PH2), END4_SULNB  (A6QCI0), END4_THEAB  (B7IDS7), 
END4_THEAC  (Q9HJS3), END4_THEM4  (A6LMU8), END4_THEMA  (Q9WYJ7), 
END4_THEP1  (A5IK54), END4_THESQ  (B1L9C6), END4_THEVO  (Q97A09), 
END4_TOLAT  (C4LD49), END4_UREPA  (Q9PQI5), END4_UREU1  (B5ZBB4), 
END4_VIBC3  (A5F5R6), END4_VIBCB  (A7MS84), END4_VIBCH  (Q9KPK7), 
END4_VIBCM  (C3LQD2), END4_VIBPA  (Q87SC6), END4_VIBVU  (Q8DEP6), 
END4_VIBVY  (Q7MNR1), END4_WOLSU  (Q7M8B4), END4_YERE8  (A1JLX8), 
END4_YERP3  (A7FK62), END4_YERPA  (Q1C982), END4_YERPB  (B2K9J1), 
END4_YERPE  (Q8ZGJ1), END4_YERPG  (A9R4S1), END4_YERPN  (Q1CG79), 
END4_YERPP  (A4TNA4), END4_YERPS  (Q66CR5), END4_YERPY  (B1JRM5)
» More

UniProtKB/Swiss-Prot
False negative sequences
44 sequences

APE_ASFB7   (Q65202), APE_ASFK5   (P0C9C8), APE_ASFM2   (Q65246), 
APE_ASFP4   (P0C9C6), APE_ASFWA   (P0C9C7), END4_AKKM8  (B2UQE3), 
END4_ALKOO  (A8ML82), END4_BIFLD  (B3DS13), END4_BIFLO  (Q8G689), 
END4_BIFLS  (B7GRN1), END4_CAMFF  (A0RRG4), END4_CARHZ  (Q3ABA7), 
END4_CENSY  (A0RYW7), END4_CLOB8  (A6LQV9), END4_CLOBA  (B2V158), 
END4_CLOBB  (B2TL64), END4_CROS8  (A7MLL2), END4_FINM2  (B0S196), 
END4_HALMA  (Q5V0S8), END4_HALS3  (B0R2U6), END4_HALSA  (Q9HSK7), 
END4_HALWD  (Q18KA6), END4_HELMI  (B0TD39), END4_LACSS  (Q38XB2), 
END4_MESFL  (Q6F1D3), END4_METLZ  (A2SPZ6), END4_METMJ  (A3CT71), 
END4_METPE  (B8GKX5), END4_MIMIV  (Q5UPY4), END4_MOOTA  (Q2RJF1), 
END4_MYCA5  (B3PMH1), END4_MYCAP  (A5IYT8), END4_MYCMO  (Q6KH96), 
END4_NATPD  (Q3IMK8), END4_NATTJ  (B2A499), END4_NITMS  (A9A555), 
END4_PEDPA  (Q03F56), END4_PEPD6  (Q189A4), END4_PERMH  (C0QRI1), 
END4_SOLUE  (Q01TU5), END4_SULSY  (B2V7A4), END4_SYMTH  (Q67S99), 
END4_THENN  (B9KBS2), END4_THET2  (Q72KH8)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

END4_THENE  (O86954), END4_YEREN  (P42691)

		
UniProtKB/Swiss-Prot
False positive sequences
5 sequences

EZH1_BOVIN  (A7E2Z2), EZH1_HUMAN  (Q92800), EZH1_MOUSE  (P70351), 
EZH1_PONAB  (Q5RDS6), GCP4_DROME  (Q9VKU7)
» More

PDB
[Detailed view]
9 PDB

1QTW; 1QUM; 1XP3; 2NQH; 2NQJ; 2X7V; 2X7W; 3AAL; 4HNO

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