Entry: PS00730

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General information about the entry

Entry name [info] AP_NUCLEASE_F2_2
Accession [info] PS00730
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00599

Name and characterization of the entry

Description [info] AP endonucleases family 2 signature 2.
Pattern [info]
[GSARY]-[LIVMF]-[CT]-[LIVMFY]-D-T-C-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 252 in 252 different sequences
Number of true positive hits 252 in 252 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 23
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.64 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 5
Site [info] zinc at position 8
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
252 sequences

APN1_CAEEL  (Q10002), APN1_SCHPO  (P50525), APN1_YEAST  (P22936), 
END4_ACHLI  (A9NFH1), END4_ACTP2  (A3MZ76), END4_ACTP7  (B3H0M0), 
END4_ACTPJ  (B0BTA9), END4_AERHH  (A0KK26), END4_AERS4  (A4SMZ0), 
END4_AKKM8  (B2UQE3), END4_ALKOO  (A8ML82), END4_ANOFW  (B7GH81), 
END4_AQUAE  (O67551), END4_ARCB4  (A8EWW1), END4_AYWBP  (Q2NJF9), 
END4_BACA2  (A7Z6S8), END4_BACAA  (C3P8J1), END4_BACAC  (C3LKW3), 
END4_BACAH  (A0RIQ8), END4_BACAN  (Q81LV1), END4_BACC0  (B7JN09), 
END4_BACC2  (B7IYD6), END4_BACC3  (C1ES07), END4_BACC4  (B7HCQ9), 
END4_BACC7  (B7HPI4), END4_BACCN  (A7GSY1), END4_BACCQ  (B9IY53), 
END4_BACCR  (Q818H3), END4_BACCZ  (Q634Q3), END4_BACFN  (Q5LG28), 
END4_BACFR  (Q64WY5), END4_BACHD  (Q9KD33), END4_BACHK  (Q6HDN3), 
END4_BACLD  (Q65HA0), END4_BACSK  (Q5WHC2), END4_BACSU  (P54476), 
END4_BACTN  (Q89YT0), END4_BACV8  (A6L330), END4_BACWK  (A9VHR4), 
END4_BIFLD  (B3DS13), END4_BIFLO  (Q8G689), END4_BIFLS  (B7GRN1), 
END4_BUCA5  (B8D8T8), END4_BUCAI  (P57237), END4_BUCAP  (P59058), 
END4_BUCAT  (B8D742), END4_BUCBP  (P59496), END4_CAMC1  (A8Z6D9), 
END4_CAMC5  (A7GW36), END4_CAMFF  (A0RRG4), END4_CAMHC  (A7I010), 
END4_CARHZ  (Q3ABA7), END4_CENSY  (A0RYW7), END4_CHLAA  (A9WII8), 
END4_CHLAB  (Q5L798), END4_CHLAD  (B8G418), END4_CHLCH  (Q3AT74), 
END4_CHLCV  (Q824X6), END4_CHLL2  (B3EEJ7), END4_CHLMU  (Q9PJB8), 
END4_CHLP8  (B3QQA9), END4_CHLPB  (B3ELV8), END4_CHLPN  (Q9Z7H3), 
END4_CHLSY  (B9LAM9), END4_CHLT2  (B0B8K0), END4_CHLTA  (Q3KL70), 
END4_CHLTB  (B0BA79), END4_CHLTE  (Q8KFL0), END4_CHLTR  (O84630), 
END4_CITK8  (A8AE66), END4_CLOB8  (A6LQV9), END4_CLOBA  (B2V158), 
END4_CLOBB  (B2TL64), END4_CLOPH  (A9KNS9), END4_CROS8  (A7MLL2), 
END4_DESAH  (C0QMG1), END4_DESOH  (A8ZSE7), END4_DESPS  (Q6ASE4), 
END4_DICDI  (Q966U0), END4_ECO24  (A7ZNY3), END4_ECO27  (B7UFH5), 
END4_ECO45  (B7MF74), END4_ECO55  (B7LAI2), END4_ECO57  (P0A6C2), 
END4_ECO5E  (B5YWV0), END4_ECO7I  (B7NMX3), END4_ECO81  (B7MX24), 
END4_ECO8A  (B7M507), END4_ECOBW  (C4ZU09), END4_ECODH  (B1X857), 
END4_ECOHS  (A8A222), END4_ECOK1  (A1AD18), END4_ECOL5  (Q0TFT1), 
END4_ECOL6  (Q8FFU0), END4_ECOLC  (B1IYB0), END4_ECOLI  (P0A6C1), 
END4_ECOLU  (B7N5C2), END4_ECOSE  (B6I8L0), END4_ECOSM  (B1LKQ6), 
END4_ECOUT  (Q1R9R2), END4_EDWI9  (C5BCN2), END4_ENT38  (A4WCJ5), 
END4_ENTFA  (Q834D0), END4_ERWT9  (B2VIH1), END4_ESCF3  (B7LVB9), 
END4_EXIS2  (B1YL88), END4_FINM2  (B0S196), END4_GEOBB  (B5EAS8), 
END4_GEODF  (B9M4N1), END4_GEOKA  (Q5KX27), END4_GEOLS  (B3E325), 
END4_GEOSL  (Q74FS7), END4_GEOSM  (C6DYE3), END4_GEOSW  (C5D4R0), 
END4_GEOTN  (A4IR02), END4_HAEDU  (Q7VMC4), END4_HAEPS  (B8F7D1), 
END4_HALOH  (B8CW79), END4_HERA2  (A9B5N7), END4_KLEP3  (B5XP51), 
END4_KLEP7  (A6TBP4), END4_LACPL  (Q88VR2), END4_LACSS  (Q38XB2), 
END4_LISIN  (Q92BR0), END4_LISMC  (C1KV96), END4_LISMF  (Q71ZM1), 
END4_LISMO  (Q8Y756), END4_LISW6  (A0AIQ1), END4_LYSSC  (B1HTF6), 
END4_MAGSM  (A0L901), END4_MESFL  (Q6F1D3), END4_METLZ  (A2SPZ6), 
END4_METMJ  (A3CT71), END4_METPE  (B8GKX5), END4_METST  (Q2NFM3), 
END4_MIMIV  (Q5UPY4), END4_MYCA5  (B3PMH1), END4_MYCAP  (A5IYT8), 
END4_MYCBO  (P63536), END4_MYCBP  (A1KGF0), END4_MYCBT  (C1AL03), 
END4_MYCCT  (Q2ST57), END4_MYCGA  (Q7NBA9), END4_MYCGE  (P47477), 
END4_MYCH2  (Q601Y6), END4_MYCH7  (Q4A8V0), END4_MYCHJ  (Q4AAX4), 
END4_MYCLB  (B8ZSC5), END4_MYCLE  (P30770), END4_MYCMM  (B2HSJ8), 
END4_MYCMO  (Q6KH96), END4_MYCMS  (Q6MUC7), END4_MYCPE  (Q8EWT2), 
END4_MYCPN  (P75457), END4_MYCS5  (Q4A6S5), END4_MYCTA  (A5U056), 
END4_MYCTO  (P9WQ12), END4_MYCTU  (P9WQ13), END4_MYCUA  (A0PM27), 
END4_NITMS  (A9A555), END4_OCEIH  (Q8EPZ2), END4_ONYPE  (Q6YQC1), 
END4_PARUW  (Q6MED0), END4_PECAS  (Q6D3L8), END4_PECCP  (C6DEL1), 
END4_PEDPA  (Q03F56), END4_PELLD  (Q3B5R5), END4_PELPB  (B4SE58), 
END4_PEPD6  (Q189A4), END4_PERMH  (C0QRI1), END4_PETMO  (A9BJ15), 
END4_PHOLL  (Q7N364), END4_PHOPR  (Q6LUP5), END4_PROA2  (B4S3I3), 
END4_PROMH  (B4ETA5), END4_PROVI  (A4SDE2), END4_SALA4  (B5EYQ5), 
END4_SALAR  (A9MK49), END4_SALCH  (Q57MD6), END4_SALDC  (B5FNK8), 
END4_SALEP  (B5R173), END4_SALG2  (B5RC42), END4_SALHS  (B4TAM6), 
END4_SALNS  (B4SY37), END4_SALPA  (Q5PE50), END4_SALPB  (A9N6I5), 
END4_SALPC  (C0Q0T7), END4_SALPK  (B5BE34), END4_SALSV  (B4TNR0), 
END4_SALTI  (Q8Z593), END4_SALTY  (Q8ZNK6), END4_SERP5  (A8GGT5), 
END4_SHIB3  (B2TVT4), END4_SHIBS  (Q31YW6), END4_SHIDS  (Q32EQ7), 
END4_SHIF8  (Q0T2W5), END4_SHIFL  (Q83QW6), END4_SHISS  (Q3Z047), 
END4_STAA1  (A7X2V2), END4_STAA2  (A6U229), END4_STAA3  (Q2FGG6), 
END4_STAA8  (Q2FY16), END4_STAA9  (A5IT85), END4_STAAB  (Q2YT22), 
END4_STAAC  (Q5HFK3), END4_STAAE  (A6QHA0), END4_STAAM  (P63537), 
END4_STAAN  (P63538), END4_STAAR  (Q6GGE2), END4_STAAS  (Q6G909), 
END4_STAAT  (A8Z497), END4_STAAW  (P63539), END4_STACT  (B9DNM8), 
END4_STAEQ  (Q5HNZ1), END4_STAES  (Q8CP25), END4_STAHJ  (Q4L6Q7), 
END4_STAS1  (Q49Y00), END4_STRAW  (Q82AG6), END4_STRCO  (Q9S2N2), 
END4_SULDN  (Q30PH2), END4_SULNB  (A6QCI0), END4_SULSY  (B2V7A4), 
END4_SYMTH  (Q67S99), END4_THEAB  (B7IDS7), END4_THEAC  (Q9HJS3), 
END4_THEM4  (A6LMU8), END4_THEMA  (Q9WYJ7), END4_THENN  (B9KBS2), 
END4_THEP1  (A5IK54), END4_THESQ  (B1L9C6), END4_THEVO  (Q97A09), 
END4_TOLAT  (C4LD49), END4_UREPA  (Q9PQI5), END4_UREU1  (B5ZBB4), 
END4_VIBC3  (A5F5R6), END4_VIBCB  (A7MS84), END4_VIBCH  (Q9KPK7), 
END4_VIBCM  (C3LQD2), END4_VIBPA  (Q87SC6), END4_VIBVU  (Q8DEP6), 
END4_VIBVY  (Q7MNR1), END4_WOLSU  (Q7M8B4), END4_YERE8  (A1JLX8), 
END4_YERP3  (A7FK62), END4_YERPA  (Q1C982), END4_YERPB  (B2K9J1), 
END4_YERPE  (Q8ZGJ1), END4_YERPG  (A9R4S1), END4_YERPN  (Q1CG79), 
END4_YERPP  (A4TNA4), END4_YERPS  (Q66CR5), END4_YERPY  (B1JRM5)
» More

UniProtKB/Swiss-Prot
False negative sequences
23 sequences

APE_ASFB7   (Q65202), APE_ASFK5   (P0C9C8), APE_ASFM2   (Q65246), 
APE_ASFP4   (P0C9C6), APE_ASFWA   (P0C9C7), END4_DESAG  (Q30YP7), 
END4_DESVH  (Q72CQ9), END4_DESVV  (A1VEI5), END4_HALHL  (A1WXM0), 
END4_HALMA  (Q5V0S8), END4_HALS3  (B0R2U6), END4_HALSA  (Q9HSK7), 
END4_HALWD  (Q18KA6), END4_HELMI  (B0TD39), END4_MOOTA  (Q2RJF1), 
END4_MYCPU  (Q98PU8), END4_NATPD  (Q3IMK8), END4_NATTJ  (B2A499), 
END4_NAUPA  (B9L9K0), END4_NITSB  (A6Q1P1), END4_PARD8  (A6LB99), 
END4_SOLUE  (Q01TU5), END4_THET2  (Q72KH8)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

END4_THENE  (O86954), END4_YEREN  (P42691)

		
PDB
[Detailed view]
11 PDB

1QTW; 1QUM; 1XP3; 2NQ9; 2NQH; 2NQJ; 2X7V; 2X7W; 3AAL; 4HNO; 4K1G

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