Entry: PS00813

General information about the entry
Entry name IF4E
Accession number PS00813
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00641
Name and characterization of the entry
DescriptionEukaryotic initiation factor 4E signature.
Pattern [DE]-[IFYL]-x(2)-F-[KRL]-x(2)-[LIVM]-x-P-x-W-E-[DVA]-x(5)-G-G-[KR]-W.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 37 hits in 37 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 37 hits in 37 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 8
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.22 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
I4E1B_HUMAN (A6NMX2), I4E1B_MOUSE (Q3UTA9), IF4E1_ARATH (O23252), 
IF4E1_CAEEL (O45551), IF4E1_MAIZE (O81481), IF4E1_ORYSJ (P48599), 
IF4E1_SCHPO (P78954), IF4E1_WHEAT (P29557), IF4E2_ARATH (Q9C7P2), 
IF4E2_CAEEL (Q21693), IF4E2_HUMAN (O60573), IF4E2_MAIZE (O81482), 
IF4E2_MOUSE (Q8BMB3), IF4E2_ORYSJ (P48600), IF4E2_SCHPO (O74743), 
IF4E2_WHEAT (Q03389), IF4E3_ARATH (Q9C7P6), IF4E3_ORYSJ (Q10NQ9), 
IF4E3_WHEAT (A3RCV9), IF4E4_ARATH (O04663), IF4E4_CAEEL (Q22888), 
IF4E5_ARATH (Q9FK59), IF4E5_CAEEL (P56570), IF4EA_DANRE (Q9DFS6), 
IF4EB_DANRE (Q9PW28), IF4E_APLCA  (O77210), IF4E_ASHGO  (Q75AV8), 
IF4E_BOVIN  (Q9N0T5), IF4E_CANAL  (Q9P975), IF4E_CANGA  (Q9P974), 
IF4E_DROME  (P48598), IF4E_HUMAN  (P06730), IF4E_MOUSE  (P63073), 
IF4E_RABIT  (P29338), IF4E_RAT    (P63074), IF4E_XENLA  (P48597), 
IF4E_YEAST  (P07260)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
I4E3A_XENLA (Q6GR08), I4E3B_XENLA (Q6NU27), IF4E3_CAEEL (O61955), 
IF4E3_DANRE (Q66HY7), IF4E3_HUMAN (Q8N5X7), IF4E3_MOUSE (Q9DBB5), 
IF4E3_XENTR (Q28ET8), IF4E_DICDI  (Q55FE0)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AP8; 1EJ1; 1EJ4; 1EJH; 1IPB; 1IPC; 1L8B; 1RF8; 1WKW; 2GPQ; 2IDR; 2IDV; 2JGB; 2JGC; 2V8W; 2V8X; 2V8Y; 2W97; 3AM7; 3TF2; 3U7X; 4AXG; 4AZA; 4DT6; 4DUM;

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