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Entry: PS00820
General information about the entry
Entry nameGLUCOAMYLASE
Accession numberPS00820
Entry typePATTERN
DateOCT-1993 (CREATED); NOV-1995 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00646
Associated ProRulePRU10051
Name and characterization of the entry
DescriptionGlucoamylase active site region signature.
Pattern[STN]-[GP]-x(1,2)-[DE]-x-W-E-E-x(2)-[GS].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 16 hits in 16 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 15 hits in 15 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 93.75 %
  • Recall (true hits / (true hits + false negatives)): 93.75 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 4,active_site
  • `Interesting' site in the pattern: 7,active_site
  • `Interesting' site in the pattern: 8,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
AMYG_ASPAW  (P69327), AMYG_ASPKA  (P23176), AMYG_ASPNG  (P69328), 
AMYG_ASPOR  (P36914), AMYG_ASPSH  (P22832), AMYG_BLAAD  (P42042), 
AMYG_CLOS0  (P29761), AMYG_NEUCR  (P14804), AMYG_RHIOR  (P07683), 
AMYG_SACFI  (P08017), AMYG_YEAST  (P08019), AMYH_SACFI  (P26989), 
AMYH_YEASX  (P04065), AMYI_YEASX  (P29760), Y1610_METJA (Q59005)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AMYG_HORRE  (Q03045)
False positive hits (sequences which do not belong to the set under consideration):
VPR_HV2D2   (P15837)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1AGM; 1AYX; 1DOG; 1GAH; 1GAI; 1GLM; 2F6D; 2FBA; 3EQA; 3GLY;

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