PROSITE logo

PROSITE entry PS00848


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] COX5B_1
Accession [info] PS00848
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-OCT-1993 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00663

Name and characterization of the entry

Description [info] Cytochrome c oxidase subunit Vb, zinc binding region signature.
Pattern [info] 
[LIVM](2)-[FYW]-x(10)-C-x(2)-C-G-x(2)-[FY]-K-L.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 13 in 13 different sequences
Number of true positive hits 10 in 10 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 76.92 %
Recall (true positives / (true positives + false negatives)) 76.92 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] zinc(?) at position 4
Site [info] zinc(?) at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 10 sequences 

COX4_SCHPO  (P79010), COX4_YEAST  (P04037), COX5B_BOVIN (P00428), 

COX5B_HUMAN (P10606), COX5B_MOUSE (P19536), COX5B_PIG   (Q5S3G4), 
COX5B_PONAB (Q5REG2), COX5B_RAT   (P12075), COX5B_VULVU (Q710D6), 
COX5_DICDI  (P29505)
» more

UniProtKB/Swiss-Prot
False negative sequences		 3 sequences 

COX4_NEUCR  (P06809), CX5B1_ARATH (Q9LW15), CX5B2_ARATH (Q9SSB8)


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			4 sequences
			


			
COX5B_SOLTU (P80499), COX5B_THUOB (P80974), CX5B1_ONCMY (P80329), 

			
CX5B2_ONCMY (P80330)


			
			» more
			


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			3 sequences
			


			
ACCD_CLOP1  (Q0TRG3), ACCD_CLOPE  (Q8XLG6), ACCD_CLOPS  (Q0STU2)


				
	

	

		PDB
[Detailed view]		
		
			109 PDB
			


			1OCC; 1OCO; 1OCR; 1OCZ; 1V54; 1V55; 2DYR; 2DYS; 2EIJ; 2EIK; 2EIL; 2EIM; 
			
				2EIN; 2OCC; 2ODX; 2Y69; 2YBB; 2ZXW; 3ABK; 3ABL; 3ABM; 3AG1; 3AG2; 3AG3; 
				3AG4; 3ASN; 3ASO; 3WG7; 3X2Q; 5B1A; 5B1B; 5B3S; 5GPN; 5IY5; 5LUF; 5W97; 
				5WAU; 5X19; 5X1B; 5X1F; 5XDQ; 5XDX; 5XTH; 5XTI; 5Z62; 5Z84; 5Z85; 5Z86; 
				5ZCO; 5ZCP; 5ZCQ; 6GIQ; 6HU9; 6J8M; 6JUW; 6JY3; 6JY4; 6NKN; 6NMF; 6NMP; 
				6T0B; 6T15; 6YMX; 6YMY; 7COH; 7CP5; 7D5W; 7D5X; 7DGQ; 7DGR; 7DGS; 7DKF; 
				7EV7; 7O37; 7O3C; 7O3E; 7THU; 7TIE; 7TIH; 7TII; 7VUW; 7VVR; 7W3E; 7XMA; 
				7XMB; 7Y44; 7YPY; 7Z10; 8C8Q; 8D4T; 8DH6; 8E7S; 8EC0; 8GBT; 8GCQ; 8GVM; 
				8H8R; 8H8S; 8IJN; 8PW5; 8PW6; 8PW7; 8Q1B; 8UGH; 8UGI; 8UGJ; 8UGL; 8UGN; 
				8UGR
			
			

			» more