Entry: PS00903

General information about the entry

Entry name [info] CYT_DCMP_DEAMINASES_1
Accession [info] PS00903
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); NOV-1997 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00702

Name and characterization of the entry

Description [info] Cytidine and deoxycytidylate deaminases zinc-binding region signature.
Pattern [info]
[CH]-[AGV]-E-x(2)-[LIVMFGAT]-[LIVM]-x(17,33)-P-C-x(2,8)-C-x(3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 252 in 244 different sequences
Number of true positive hits 247 in 239 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 24
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.02 %
Recall (true positives / (true positives + false negatives)) 91.14 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] zinc at position 1
Site [info] zinc at position 9
Site [info] zinc at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
239 sequences

ABC3A_HUMAN (P31941    ), ABC3B_HUMAN (Q9UH17    ), ABC3C_GORGO (Q694B5    ), 
ABC3C_HUMAN (Q9NRW3    ), ABC3D_HUMAN (Q96AK3    ), ABC3F_HUMAN (Q8IUX4    ), 
ABC3G_CHLAE (Q7YR25    ), ABC3G_ERYPA (Q694C5    ), ABC3G_GORGO (Q694C1    ), 
ABC3G_HUMAN (Q9HC16    ), ABC3G_LAGLA (Q694B8    ), ABC3G_MACFA (Q694C2    ), 
ABC3G_MACMU (Q7YR23    ), ABC3G_MACNG (Q694C4    ), ABC3G_PANPA (Q694B6    ), 
ABC3G_PANTR (Q7YR24    ), ABC3G_PAPAN (Q694B7    ), ABC3G_PONPY (Q694C0    ), 
ABC3G_SAGLB (Q694B9    ), ABC3H_HUMAN (Q6NTF7    ), ABC3H_MACMU (Q19Q52    ), 
ABC3H_PONPY (Q1WBT4    ), ABEC1_HUMAN (P41238    ), ABEC1_MESAU (Q9EQP0    ), 
ABEC1_MONDO (Q9TUI7    ), ABEC1_MOUSE (P51908    ), ABEC1_PONPY (Q694B3    ), 
ABEC1_RABIT (P47855    ), ABEC1_RAT   (P38483    ), ABEC3_CRILO (P60704    ), 
ABEC3_MOUSE (Q99J72    ), ABEC3_RAT   (P60705    ), ADAT2_BOVIN (Q5E9J7    ), 
ADAT2_DANRE (Q5RIV4    ), ADAT2_HUMAN (Q7Z6V5    ), ADAT2_MOUSE (Q6P6J0    ), 
ADAT2_XENLA (Q4V7V8    ), ADAT2_XENTR (Q0P4H0    ), AICDA_BOVIN (Q2PT36    ), 
AICDA_CANLF (Q75W64    ), AICDA_HUMAN (Q9GZX7    ), AICDA_MOUSE (Q9WVE0    ), 
BSD_ASPTE   (P0C2P0    ), BSD_ASPTN   (P0C2P1    ), BSD_COCIM   (P0CI02    ), 
BSR_BACCE   (P33967    ), CDA1_ARATH  (O65896    ), CDA2_ARATH  (O65571    ), 
CDA3_ARATH  (Q9S847    ), CDA5_ARATH  (Q9S7L8    ), CDA8_ARATH  (Q9XEX4    ), 
CDAC1_DANRE (Q5U3U4    ), CDAC1_HUMAN (Q9BWV3    ), CDAC1_MACFA (Q4R683    ), 
CDAC1_MOUSE (Q8BMD5    ), CDAC1_PONAB (Q5RAX4    ), CDD_ACTP2   (A3N1Z1    ), 
CDD_ACTP7   (B3GYC3    ), CDD_ACTPJ   (B0BQT2    ), CDD_ACTSZ   (A6VLF5    ), 
CDD_AERHH   (A0KJH4    ), CDD_AERS4   (A4SNI2    ), CDD_BACHD   (Q9KD53    ), 
CDD_BACSU   (P19079    ), CDD_CITK8   (A8AE87    ), CDD_CROS8   (A7MLJ4    ), 
CDD_ECO24   (A7ZNW5    ), CDD_ECO27   (B7UFF9    ), CDD_ECO45   (B7MF55    ), 
CDD_ECO55   (B7LA09    ), CDD_ECO57   (Q8X648    ), CDD_ECO5E   (B5YW75    ), 
CDD_ECO7I   (B7NMA8    ), CDD_ECO81   (B7MXF5    ), CDD_ECO8A   (B7M4Y8    ), 
CDD_ECOBW   (C4ZSM3    ), CDD_ECODH   (B1X7N2    ), CDD_ECOHS   (A8A204    ), 
CDD_ECOK1   (A1AD04    ), CDD_ECOL5   (Q0TFU8    ), CDD_ECOL6   (Q8FFV3    ), 
CDD_ECOLC   (B1IYC6    ), CDD_ECOLI   (P0ABF6    ), CDD_ECOLU   (B7NCH2    ), 
CDD_ECOSE   (B6I8J3    ), CDD_ECOSM   (B1LKP0    ), CDD_ECOUT   (Q1R9T0    ), 
CDD_EDWI9   (C5BCM4    ), CDD_ENT38   (A4WCI1    ), CDD_ERWT9   (B2VIF3    ), 
CDD_ESCF3   (B7LVA3    ), CDD_HAEDU   (Q7VMJ6    ), CDD_HAEI8   (Q4QK60    ), 
CDD_HAEIE   (A5UBV9    ), CDD_HAEIG   (A5UEI7    ), CDD_HAEIN   (P44325    ), 
CDD_HAES1   (Q0I4X6    ), CDD_HISS2   (B0USP2    ), CDD_HUMAN   (P32320    ), 
CDD_KLEP3   (B5XP65    ), CDD_KLEP7   (A6TBN1    ), CDD_MANSM   (Q65RG8    ), 
CDD_MOUSE   (P56389    ), CDD_MYCGE   (P47298    ), CDD_MYCPI   (P47718    ), 
CDD_MYCPN   (P75051    ), CDD_MYCTO   (P9WPH2    ), CDD_MYCTU   (P9WPH3    ), 
CDD_PASMU   (Q9CP11    ), CDD_PECAS   (Q6D3B4    ), CDD_PECCP   (C6DDS7    ), 
CDD_PHOLL   (Q7N6K3    ), CDD_PHOPR   (Q6LRI0    ), CDD_PROMH   (B4ESY3    ), 
CDD_PSEHT   (Q3IBX5    ), CDD_SALA4   (B5EYN3    ), CDD_SALAR   (A9MKS5    ), 
CDD_SALCH   (Q57MF5    ), CDD_SALDC   (B5FMZ9    ), CDD_SALEP   (B5R153    ), 
CDD_SALG2   (B5RC22    ), CDD_SALHS   (B4TAK5    ), CDD_SALNS   (B4SY15    ), 
CDD_SALPA   (Q5PE68    ), CDD_SALPB   (A9N6L3    ), CDD_SALPC   (C0Q0V4    ), 
CDD_SALPK   (B5BE52    ), CDD_SALSV   (B4TNP0    ), CDD_SALTI   (Q8Z5A8    ), 
CDD_SALTY   (Q8ZNM0    ), CDD_SCHPO   (Q09190    ), CDD_SERP5   (A8GC32    ), 
CDD_SHEAM   (A1S723    ), CDD_SHEB2   (B8EF35    ), CDD_SHEB5   (A3D392    ), 
CDD_SHEB8   (A6WLY5    ), CDD_SHEB9   (A9KXF0    ), CDD_SHEFN   (Q083S7    ), 
CDD_SHEHH   (B0TQV3    ), CDD_SHELP   (A3QDC9    ), CDD_SHEON   (Q8EDG1    ), 
CDD_SHEPA   (A8H5H1    ), CDD_SHEPC   (A4Y5R0    ), CDD_SHEPW   (B8CR83    ), 
CDD_SHESA   (A0KYD1    ), CDD_SHESH   (A8FWK2    ), CDD_SHESM   (Q0HHI5    ), 
CDD_SHESR   (Q0HTT9    ), CDD_SHESW   (A1RL10    ), CDD_SHEWM   (B1KRC5    ), 
CDD_SHIB3   (B2TVV2    ), CDD_SHIBS   (Q322V3    ), CDD_SHIDS   (Q32EM3    ), 
CDD_SHIF8   (Q0T2Y0    ), CDD_SHIFL   (P0ABF7    ), CDD_SHISS   (Q3Z062    ), 
CDD_SODGM   (Q2NUD2    ), CDD_VIBC3   (A5F1V7    ), CDD_VIBCB   (A7MVH6    ), 
CDD_VIBCH   (Q9KSM5    ), CDD_VIBCM   (C3LLS7    ), CDD_VIBF1   (Q5E4R6    ), 
CDD_VIBFM   (B5FEN2    ), CDD_VIBPA   (Q87Q52    ), CDD_VIBTL   (B7VPF1    ), 
CDD_VIBVU   (Q8DA31    ), CDD_VIBVY   (Q7MK48    ), CDD_YEAST   (Q06549    ), 
CDD_YERP3   (A7FJK3    ), CDD_YERPA   (Q1C9U7    ), CDD_YERPB   (B2JZJ6    ), 
CDD_YERPE   (Q8ZG08    ), CDD_YERPG   (A9R1B9    ), CDD_YERPN   (Q1CGT5    ), 
CDD_YERPP   (A4TKN7    ), CDD_YERPS   (Q66C79    ), CDD_YERPY   (B1JPZ5    ), 
COMEB_BACSU (P32393    ), DCTD_BPMD2  (O22000    ), DCTD_BPT2   (P00814    ), 
DCTD_BPT4   (P16006    ), DCTD_CAEEL  (P30648    ), DCTD_DROME  (Q9VWA2    ), 
DCTD_HUMAN  (P32321    ), DCTD_MOUSE  (Q8K2D6    ), DCTD_PONAB  (Q5RC69    ), 
DCTD_RAT    (Q5M9G0    ), DCTD_SCHPO  (O43012    ), DCTD_YEAST  (P06773    ), 
FCA1_CANAX  (P78594    ), FCY1_YEAST  (Q12178    ), FCYS_SCHPO  (O59834    ), 
GUAD_BACSU  (O34598    ), RIBD1_BUCAI (P57533    ), RIBD1_BUCAP (Q8K9A4    ), 
RIBD_ACTPL  (P50853    ), RIBD_AQUAE  (O66534    ), RIBD_ARATH  (Q8GWP5    ), 
RIBD_BACAM  (P70814    ), RIBD_BACSU  (P17618    ), RIBD_BUCBP  (Q89AB0    ), 
RIBD_CHLPN  (Q9Z735    ), RIBD_CHLTR  (O84735    ), RIBD_CORAM  (O24750    ), 
RIBD_ECOLI  (P25539    ), RIBD_HAEIN  (P44326    ), RIBD_MAIZE  (B6TRH4    ), 
RIBD_MYCTO  (P9WPH0    ), RIBD_MYCTU  (P9WPH1    ), RIBD_SYNY3  (Q55158    ), 
TAD2_SCHPO  (O94642    ), TAD2_YEAST  (P47058    ), TADA_AGRFC  (A9CK16    ), 
TADA_AQUAE  (O67050    ), TADA_BACSU  (P21335    ), TADA_BUCAI  (P57343    ), 
TADA_BUCAP  (Q8K9R4    ), TADA_BUCBP  (Q89AM8    ), TADA_ECO57  (Q8XA44    ), 
TADA_ECOL6  (Q8FF24    ), TADA_ECOLI  (P68398    ), TADA_HAEIN  (P44931    ), 
TADA_RICBR  (Q1RGK7    ), TADA_RICCN  (Q92G39    ), TADA_RICFE  (Q4UJW9    ), 
TADA_RICPR  (Q9ZCC6    ), TADA_RICTY  (Q68Y02    ), TADA_SALTI  (Q8XGY4    ), 
TADA_SALTY  (Q7CQ08    ), TADA_SHIFL  (P68397    ), TADA_STAAM  (Q99W51    ), 
TADA_STRP1  (P68999    ), TADA_STRP3  (P0DA20    ), TADA_STRP6  (Q5XE14    ), 
TADA_STRP8  (Q8P2R7    ), TADA_STRPQ  (P0DA21    ), TILS_THET2  (Q72IF6    ), 
TILS_THET8  (Q5SI38    ), YLXG_ALIFS  (P33968    )
» more

UniProtKB/Swiss-Prot
False negative sequences
24 sequences

ABEC2_BOVIN (Q3SYR3    ), ABEC2_HUMAN (Q9Y235    ), ABEC2_MOUSE (Q9WV35    ), 
ABEC2_PONPY (Q694B4    ), ABEC4_HUMAN (Q8WW27    ), ABEC4_MACFA (Q8WP22    ), 
ABEC4_MOUSE (Q497M3    ), ABEC4_RAT   (Q6AXX9    ), ADAT3_DANRE (Q8JFW4    ), 
ADAT3_HUMAN (Q96EY9    ), ADAT3_MOUSE (Q6PAT0    ), ADAT3_RAT   (Q561R2    ), 
CDA4_ARATH  (Q9S7S2    ), CDA6_ARATH  (Q9SU86    ), CDA7_ARATH  (Q9SU87    ), 
CDA9_ARATH  (Q9S789    ), CDAT8_METKA (Q8TWU6    ), CDD_DICDI   (Q54I82    ), 
CDD_SPOPS   (Q9S3M0    ), RIB2_SCHPO  (P87241    ), RIBD_CHLMU  (Q9PLJ6    ), 
TAD3_SCHPO  (Q9P7N4    ), TAD3_YEAST  (Q9URQ3    ), TADA_ARATH  (Q9S7I0    )
» more

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

SECA_COXBU  (Q83F06    ), SECA_PSEMY  (A4XQT3    ), SECA_PSEU5  (A4VPA3    ), 
SECA_SHELP  (A3QIL3    ), Y949_METJA  (Q58359    )
» more

PDB
[Detailed view]
66 PDB

1AF2; 1ALN; 1CTT; 1CTU; 1JTK; 1MQ0; 1OX7; 1P6O; 1R5T; 1RB7; 1TIY; 1UAQ; 1UWZ; 1UX0; 1UX1; 1VQ2; 1WKQ; 1WN5; 1WN6; 1WWR; 1YSB; 1YSD; 1Z3A; 1ZAB; 2A8N; 2B3J; 2B3Z; 2D5N; 2FR5; 2FR6; 2JYW; 2KBO; 2KEM; 2M65; 2NBQ; 2NX8; 2O3K; 2W4L; 2Z3G; 2Z3H; 2Z3J; 3DH1; 3E1U; 3EX8; 3IJF; 3IQS; 3IR2; 3OJ6; 3V4J; 3V4K; 3VM8; 3VOW; 3WUS; 4G3M; 4IOU; 4J4J; 4ROV; 4ROW; 4WIF; 4WIG; 5CQD; 5CQH; 5CQI; 5CQK; 5HX4; 5HX5
» more

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