Entry: PS00903

General information about the entry

Entry name [info] CYT_DCMP_DEAMINASES_1
Accession [info] PS00903
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); NOV-1997 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00702

Name and characterization of the entry

Description [info] Cytidine and deoxycytidylate deaminases zinc-binding region signature.
Pattern [info]
[CH]-[AGV]-E-x(2)-[LIVMFGAT]-[LIVM]-x(17,33)-P-C-x(2,8)-C-x(3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 252 in 244 different sequences
Number of true positive hits 247 in 239 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 24
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.02 %
Recall (true positives / (true positives + false negatives)) 91.14 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] zinc at position 1
Site [info] zinc at position 9
Site [info] zinc at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
239 sequences

ABC3A_HUMAN (P31941), ABC3B_HUMAN (Q9UH17), ABC3C_GORGO (Q694B5), 
ABC3C_HUMAN (Q9NRW3), ABC3D_HUMAN (Q96AK3), ABC3F_HUMAN (Q8IUX4), 
ABC3G_CHLAE (Q7YR25), ABC3G_ERYPA (Q694C5), ABC3G_GORGO (Q694C1), 
ABC3G_HUMAN (Q9HC16), ABC3G_LAGLA (Q694B8), ABC3G_MACFA (Q694C2), 
ABC3G_MACMU (Q7YR23), ABC3G_MACNG (Q694C4), ABC3G_PANPA (Q694B6), 
ABC3G_PANTR (Q7YR24), ABC3G_PAPAN (Q694B7), ABC3G_PONPY (Q694C0), 
ABC3G_SAGLB (Q694B9), ABC3H_HUMAN (Q6NTF7), ABC3H_MACMU (Q19Q52), 
ABC3H_PONPY (Q1WBT4), ABEC1_HUMAN (P41238), ABEC1_MESAU (Q9EQP0), 
ABEC1_MONDO (Q9TUI7), ABEC1_MOUSE (P51908), ABEC1_PONPY (Q694B3), 
ABEC1_RABIT (P47855), ABEC1_RAT   (P38483), ABEC3_CRILO (P60704), 
ABEC3_MOUSE (Q99J72), ABEC3_RAT   (P60705), ADAT2_BOVIN (Q5E9J7), 
ADAT2_DANRE (Q5RIV4), ADAT2_HUMAN (Q7Z6V5), ADAT2_MOUSE (Q6P6J0), 
ADAT2_XENLA (Q4V7V8), ADAT2_XENTR (Q0P4H0), AICDA_BOVIN (Q2PT36), 
AICDA_CANFA (Q75W64), AICDA_HUMAN (Q9GZX7), AICDA_MOUSE (Q9WVE0), 
BSD_ASPTE   (P0C2P0), BSD_ASPTN   (P0C2P1), BSD_COCIM   (P0CI02), 
BSR_BACCE   (P33967), CDA1_ARATH  (O65896), CDA2_ARATH  (O65571), 
CDA3_ARATH  (Q9S847), CDA5_ARATH  (Q9S7L8), CDA8_ARATH  (Q9XEX4), 
CDAC1_DANRE (Q5U3U4), CDAC1_HUMAN (Q9BWV3), CDAC1_MACFA (Q4R683), 
CDAC1_MOUSE (Q8BMD5), CDAC1_PONAB (Q5RAX4), CDD_ACTP2   (A3N1Z1), 
CDD_ACTP7   (B3GYC3), CDD_ACTPJ   (B0BQT2), CDD_ACTSZ   (A6VLF5), 
CDD_AERHH   (A0KJH4), CDD_AERS4   (A4SNI2), CDD_BACHD   (Q9KD53), 
CDD_BACSU   (P19079), CDD_CITK8   (A8AE87), CDD_CROS8   (A7MLJ4), 
CDD_ECO24   (A7ZNW5), CDD_ECO27   (B7UFF9), CDD_ECO45   (B7MF55), 
CDD_ECO55   (B7LA09), CDD_ECO57   (Q8X648), CDD_ECO5E   (B5YW75), 
CDD_ECO7I   (B7NMA8), CDD_ECO81   (B7MXF5), CDD_ECO8A   (B7M4Y8), 
CDD_ECOBW   (C4ZSM3), CDD_ECODH   (B1X7N2), CDD_ECOHS   (A8A204), 
CDD_ECOK1   (A1AD04), CDD_ECOL5   (Q0TFU8), CDD_ECOL6   (Q8FFV3), 
CDD_ECOLC   (B1IYC6), CDD_ECOLI   (P0ABF6), CDD_ECOLU   (B7NCH2), 
CDD_ECOSE   (B6I8J3), CDD_ECOSM   (B1LKP0), CDD_ECOUT   (Q1R9T0), 
CDD_EDWI9   (C5BCM4), CDD_ENT38   (A4WCI1), CDD_ERWT9   (B2VIF3), 
CDD_ESCF3   (B7LVA3), CDD_HAEDU   (Q7VMJ6), CDD_HAEI8   (Q4QK60), 
CDD_HAEIE   (A5UBV9), CDD_HAEIG   (A5UEI7), CDD_HAEIN   (P44325), 
CDD_HAES1   (Q0I4X6), CDD_HISS2   (B0USP2), CDD_HUMAN   (P32320), 
CDD_KLEP3   (B5XP65), CDD_KLEP7   (A6TBN1), CDD_MANSM   (Q65RG8), 
CDD_MOUSE   (P56389), CDD_MYCGE   (P47298), CDD_MYCPI   (P47718), 
CDD_MYCPN   (P75051), CDD_MYCTO   (P9WPH2), CDD_MYCTU   (P9WPH3), 
CDD_PASMU   (Q9CP11), CDD_PECAS   (Q6D3B4), CDD_PECCP   (C6DDS7), 
CDD_PHOLL   (Q7N6K3), CDD_PHOPR   (Q6LRI0), CDD_PROMH   (B4ESY3), 
CDD_PSEHT   (Q3IBX5), CDD_SALA4   (B5EYN3), CDD_SALAR   (A9MKS5), 
CDD_SALCH   (Q57MF5), CDD_SALDC   (B5FMZ9), CDD_SALEP   (B5R153), 
CDD_SALG2   (B5RC22), CDD_SALHS   (B4TAK5), CDD_SALNS   (B4SY15), 
CDD_SALPA   (Q5PE68), CDD_SALPB   (A9N6L3), CDD_SALPC   (C0Q0V4), 
CDD_SALPK   (B5BE52), CDD_SALSV   (B4TNP0), CDD_SALTI   (Q8Z5A8), 
CDD_SALTY   (Q8ZNM0), CDD_SCHPO   (Q09190), CDD_SERP5   (A8GC32), 
CDD_SHEAM   (A1S723), CDD_SHEB2   (B8EF35), CDD_SHEB5   (A3D392), 
CDD_SHEB8   (A6WLY5), CDD_SHEB9   (A9KXF0), CDD_SHEFN   (Q083S7), 
CDD_SHEHH   (B0TQV3), CDD_SHELP   (A3QDC9), CDD_SHEON   (Q8EDG1), 
CDD_SHEPA   (A8H5H1), CDD_SHEPC   (A4Y5R0), CDD_SHEPW   (B8CR83), 
CDD_SHESA   (A0KYD1), CDD_SHESH   (A8FWK2), CDD_SHESM   (Q0HHI5), 
CDD_SHESR   (Q0HTT9), CDD_SHESW   (A1RL10), CDD_SHEWM   (B1KRC5), 
CDD_SHIB3   (B2TVV2), CDD_SHIBS   (Q322V3), CDD_SHIDS   (Q32EM3), 
CDD_SHIF8   (Q0T2Y0), CDD_SHIFL   (P0ABF7), CDD_SHISS   (Q3Z062), 
CDD_SODGM   (Q2NUD2), CDD_VIBC3   (A5F1V7), CDD_VIBCB   (A7MVH6), 
CDD_VIBCH   (Q9KSM5), CDD_VIBCM   (C3LLS7), CDD_VIBF1   (Q5E4R6), 
CDD_VIBFM   (B5FEN2), CDD_VIBPA   (Q87Q52), CDD_VIBTL   (B7VPF1), 
CDD_VIBVU   (Q8DA31), CDD_VIBVY   (Q7MK48), CDD_YEAST   (Q06549), 
CDD_YERP3   (A7FJK3), CDD_YERPA   (Q1C9U7), CDD_YERPB   (B2JZJ6), 
CDD_YERPE   (Q8ZG08), CDD_YERPG   (A9R1B9), CDD_YERPN   (Q1CGT5), 
CDD_YERPP   (A4TKN7), CDD_YERPS   (Q66C79), CDD_YERPY   (B1JPZ5), 
COMEB_BACSU (P32393), DCTD_BPMD2  (O22000), DCTD_BPT2   (P00814), 
DCTD_BPT4   (P16006), DCTD_CAEEL  (P30648), DCTD_DROME  (Q9VWA2), 
DCTD_HUMAN  (P32321), DCTD_MOUSE  (Q8K2D6), DCTD_PONAB  (Q5RC69), 
DCTD_RAT    (Q5M9G0), DCTD_SCHPO  (O43012), DCTD_YEAST  (P06773), 
FCA1_CANAX  (P78594), FCY1_YEAST  (Q12178), FCYS_SCHPO  (O59834), 
GUAD_BACSU  (O34598), RIBD1_BUCAI (P57533), RIBD1_BUCAP (Q8K9A4), 
RIBD_ACTPL  (P50853), RIBD_AQUAE  (O66534), RIBD_ARATH  (Q8GWP5), 
RIBD_BACAM  (P70814), RIBD_BACSU  (P17618), RIBD_BUCBP  (Q89AB0), 
RIBD_CHLPN  (Q9Z735), RIBD_CHLTR  (O84735), RIBD_CORAM  (O24750), 
RIBD_ECOLI  (P25539), RIBD_HAEIN  (P44326), RIBD_MAIZE  (B6TRH4), 
RIBD_MYCTO  (P9WPH0), RIBD_MYCTU  (P9WPH1), RIBD_SYNY3  (Q55158), 
TAD2_SCHPO  (O94642), TAD2_YEAST  (P47058), TADA_AGRFC  (A9CK16), 
TADA_AQUAE  (O67050), TADA_BACSU  (P21335), TADA_BUCAI  (P57343), 
TADA_BUCAP  (Q8K9R4), TADA_BUCBP  (Q89AM8), TADA_ECO57  (Q8XA44), 
TADA_ECOL6  (Q8FF24), TADA_ECOLI  (P68398), TADA_HAEIN  (P44931), 
TADA_RICBR  (Q1RGK7), TADA_RICCN  (Q92G39), TADA_RICFE  (Q4UJW9), 
TADA_RICPR  (Q9ZCC6), TADA_RICTY  (Q68Y02), TADA_SALTI  (Q8XGY4), 
TADA_SALTY  (Q7CQ08), TADA_SHIFL  (P68397), TADA_STAAM  (Q99W51), 
TADA_STRP1  (P68999), TADA_STRP3  (P0DA20), TADA_STRP6  (Q5XE14), 
TADA_STRP8  (Q8P2R7), TADA_STRPQ  (P0DA21), TILS_THET2  (Q72IF6), 
TILS_THET8  (Q5SI38), YLXG_ALIFS  (P33968)
» More

UniProtKB/Swiss-Prot
False negative sequences
24 sequences

ABEC2_BOVIN (Q3SYR3), ABEC2_HUMAN (Q9Y235), ABEC2_MOUSE (Q9WV35), 
ABEC2_PONPY (Q694B4), ABEC4_HUMAN (Q8WW27), ABEC4_MACFA (Q8WP22), 
ABEC4_MOUSE (Q497M3), ABEC4_RAT   (Q6AXX9), ADAT3_DANRE (Q8JFW4), 
ADAT3_HUMAN (Q96EY9), ADAT3_MOUSE (Q6PAT0), ADAT3_RAT   (Q561R2), 
CDA4_ARATH  (Q9S7S2), CDA6_ARATH  (Q9SU86), CDA7_ARATH  (Q9SU87), 
CDA9_ARATH  (Q9S789), CDAT8_METKA (Q8TWU6), CDD_DICDI   (Q54I82), 
CDD_SPOPS   (Q9S3M0), RIB2_SCHPO  (P87241), RIBD_CHLMU  (Q9PLJ6), 
TAD3_SCHPO  (Q9P7N4), TAD3_YEAST  (Q9URQ3), TADA_ARATH  (Q9S7I0)
» More

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

SECA_COXBU  (Q83F06), SECA_PSEMY  (A4XQT3), SECA_PSEU5  (A4VPA3), 
SECA_SHELP  (A3QIL3), Y949_METJA  (Q58359)
» More

PDB
[Detailed view]
56 PDB

1AF2; 1ALN; 1CTT; 1CTU; 1JTK; 1MQ0; 1OX7; 1P6O; 1R5T; 1RB7; 1TIY; 1UAQ; 1UWZ; 1UX0; 1UX1; 1VQ2; 1WKQ; 1WN5; 1WN6; 1WWR; 1YSB; 1YSD; 1Z3A; 1ZAB; 2A8N; 2B3J; 2B3Z; 2D5N; 2FR5; 2FR6; 2JYW; 2KBO; 2KEM; 2M65; 2NX8; 2O3K; 2W4L; 2Z3G; 2Z3H; 2Z3J; 3DH1; 3E1U; 3EX8; 3IJF; 3IQS; 3IR2; 3OJ6; 3V4J; 3V4K; 3VM8; 3VOW; 4G3M; 4IOU; 4J4J; 4ROV; 4ROW
» More

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