Entry: PS00903

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General information about the entry

Entry name [info] CYT_DCMP_DEAMINASES
Accession [info] PS00903
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); NOV-1997 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00702

Name and characterization of the entry

Description [info] Cytidine and deoxycytidylate deaminases zinc-binding region signature.
Pattern [info]
[CH]-[AGV]-E-x(2)-[LIVMFGAT]-[LIVM]-x(17,33)-P-C-x(2,8)-C-x(3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 252 in 244 different sequences
Number of true positive hits 247 in 239 different sequences
Number of 'unknown' hits
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 24
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.02 %
Recall (true positives / (true positives + false negatives)) 91.14 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] zinc at position 1
Site [info] zinc at position 9
Site [info] zinc at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
239 sequences

ABC3A_HUMAN (P31941), ABC3B_HUMAN (Q9UH17), ABC3C_GORGO (Q694B5), 
ABC3C_HUMAN (Q9NRW3), ABC3D_HUMAN (Q96AK3), ABC3F_HUMAN (Q8IUX4), 
ABC3G_CHLAE (Q7YR25), ABC3G_ERYPA (Q694C5), ABC3G_GORGO (Q694C1), 
ABC3G_HUMAN (Q9HC16), ABC3G_LAGLA (Q694B8), ABC3G_MACFA (Q694C2), 
ABC3G_MACMU (Q7YR23), ABC3G_MACNG (Q694C4), ABC3G_PANPA (Q694B6), 
ABC3G_PANTR (Q7YR24), ABC3G_PAPAN (Q694B7), ABC3G_PONPY (Q694C0), 
ABC3G_SAGLB (Q694B9), ABC3H_HUMAN (Q6NTF7), ABC3H_MACMU (Q19Q52), 
ABC3H_PONPY (Q1WBT4), ABEC1_HUMAN (P41238), ABEC1_MESAU (Q9EQP0), 
ABEC1_MONDO (Q9TUI7), ABEC1_MOUSE (P51908), ABEC1_PONPY (Q694B3), 
ABEC1_RABIT (P47855), ABEC1_RAT   (P38483), ABEC3_CRILO (P60704), 
ABEC3_MOUSE (Q99J72), ABEC3_RAT   (P60705), ADAT2_BOVIN (Q5E9J7), 
ADAT2_DANRE (Q5RIV4), ADAT2_HUMAN (Q7Z6V5), ADAT2_MOUSE (Q6P6J0), 
ADAT2_XENLA (Q4V7V8), ADAT2_XENTR (Q0P4H0), AICDA_BOVIN (Q2PT36), 
AICDA_CANFA (Q75W64), AICDA_HUMAN (Q9GZX7), AICDA_MOUSE (Q9WVE0), 
BSD_ASPTE   (P0C2P0), BSD_ASPTN   (P0C2P1), BSD_COCIM   (P0CI02), 
BSR_BACCE   (P33967), CDA1_ARATH  (O65896), CDA2_ARATH  (O65571), 
CDA3_ARATH  (Q9S847), CDA5_ARATH  (Q9S7L8), CDA8_ARATH  (Q9XEX4), 
CDAC1_DANRE (Q5U3U4), CDAC1_HUMAN (Q9BWV3), CDAC1_MACFA (Q4R683), 
CDAC1_MOUSE (Q8BMD5), CDAC1_PONAB (Q5RAX4), CDD_ACTP2   (A3N1Z1), 
CDD_ACTP7   (B3GYC3), CDD_ACTPJ   (B0BQT2), CDD_ACTSZ   (A6VLF5), 
CDD_AERHH   (A0KJH4), CDD_AERS4   (A4SNI2), CDD_BACHD   (Q9KD53), 
CDD_BACSU   (P19079), CDD_CITK8   (A8AE87), CDD_CROS8   (A7MLJ4), 
CDD_ECO24   (A7ZNW5), CDD_ECO27   (B7UFF9), CDD_ECO45   (B7MF55), 
CDD_ECO55   (B7LA09), CDD_ECO57   (Q8X648), CDD_ECO5E   (B5YW75), 
CDD_ECO7I   (B7NMA8), CDD_ECO81   (B7MXF5), CDD_ECO8A   (B7M4Y8), 
CDD_ECOBW   (C4ZSM3), CDD_ECODH   (B1X7N2), CDD_ECOHS   (A8A204), 
CDD_ECOK1   (A1AD04), CDD_ECOL5   (Q0TFU8), CDD_ECOL6   (Q8FFV3), 
CDD_ECOLC   (B1IYC6), CDD_ECOLI   (P0ABF6), CDD_ECOLU   (B7NCH2), 
CDD_ECOSE   (B6I8J3), CDD_ECOSM   (B1LKP0), CDD_ECOUT   (Q1R9T0), 
CDD_EDWI9   (C5BCM4), CDD_ENT38   (A4WCI1), CDD_ERWT9   (B2VIF3), 
CDD_ESCF3   (B7LVA3), CDD_HAEDU   (Q7VMJ6), CDD_HAEI8   (Q4QK60), 
CDD_HAEIE   (A5UBV9), CDD_HAEIG   (A5UEI7), CDD_HAEIN   (P44325), 
CDD_HISS1   (Q0I4X6), CDD_HISS2   (B0USP2), CDD_HUMAN   (P32320), 
CDD_KLEP3   (B5XP65), CDD_KLEP7   (A6TBN1), CDD_MANSM   (Q65RG8), 
CDD_MOUSE   (P56389), CDD_MYCGE   (P47298), CDD_MYCPI   (P47718), 
CDD_MYCPN   (P75051), CDD_MYCTO   (P9WPH2), CDD_MYCTU   (P9WPH3), 
CDD_PASMU   (Q9CP11), CDD_PECAS   (Q6D3B4), CDD_PECCP   (C6DDS7), 
CDD_PHOLL   (Q7N6K3), CDD_PHOPR   (Q6LRI0), CDD_PROMH   (B4ESY3), 
CDD_PSEHT   (Q3IBX5), CDD_SALA4   (B5EYN3), CDD_SALAR   (A9MKS5), 
CDD_SALCH   (Q57MF5), CDD_SALDC   (B5FMZ9), CDD_SALEP   (B5R153), 
CDD_SALG2   (B5RC22), CDD_SALHS   (B4TAK5), CDD_SALNS   (B4SY15), 
CDD_SALPA   (Q5PE68), CDD_SALPB   (A9N6L3), CDD_SALPC   (C0Q0V4), 
CDD_SALPK   (B5BE52), CDD_SALSV   (B4TNP0), CDD_SALTI   (Q8Z5A8), 
CDD_SALTY   (Q8ZNM0), CDD_SCHPO   (Q09190), CDD_SERP5   (A8GC32), 
CDD_SHEAM   (A1S723), CDD_SHEB2   (B8EF35), CDD_SHEB5   (A3D392), 
CDD_SHEB8   (A6WLY5), CDD_SHEB9   (A9KXF0), CDD_SHEFN   (Q083S7), 
CDD_SHEHH   (B0TQV3), CDD_SHELP   (A3QDC9), CDD_SHEON   (Q8EDG1), 
CDD_SHEPA   (A8H5H1), CDD_SHEPC   (A4Y5R0), CDD_SHEPW   (B8CR83), 
CDD_SHESA   (A0KYD1), CDD_SHESH   (A8FWK2), CDD_SHESM   (Q0HHI5), 
CDD_SHESR   (Q0HTT9), CDD_SHESW   (A1RL10), CDD_SHEWM   (B1KRC5), 
CDD_SHIB3   (B2TVV2), CDD_SHIBS   (Q322V3), CDD_SHIDS   (Q32EM3), 
CDD_SHIF8   (Q0T2Y0), CDD_SHIFL   (P0ABF7), CDD_SHISS   (Q3Z062), 
CDD_SODGM   (Q2NUD2), CDD_VIBC3   (A5F1V7), CDD_VIBCB   (A7MVH6), 
CDD_VIBCH   (Q9KSM5), CDD_VIBCM   (C3LLS7), CDD_VIBF1   (Q5E4R6), 
CDD_VIBFM   (B5FEN2), CDD_VIBPA   (Q87Q52), CDD_VIBSL   (B7VPF1), 
CDD_VIBVU   (Q8DA31), CDD_VIBVY   (Q7MK48), CDD_YEAST   (Q06549), 
CDD_YERP3   (A7FJK3), CDD_YERPA   (Q1C9U7), CDD_YERPB   (B2JZJ6), 
CDD_YERPE   (Q8ZG08), CDD_YERPG   (A9R1B9), CDD_YERPN   (Q1CGT5), 
CDD_YERPP   (A4TKN7), CDD_YERPS   (Q66C79), CDD_YERPY   (B1JPZ5), 
COMEB_BACSU (P32393), DCTD_BPMD2  (O22000), DCTD_BPT2   (P00814), 
DCTD_BPT4   (P16006), DCTD_CAEEL  (P30648), DCTD_DROME  (Q9VWA2), 
DCTD_HUMAN  (P32321), DCTD_MOUSE  (Q8K2D6), DCTD_PONAB  (Q5RC69), 
DCTD_RAT    (Q5M9G0), DCTD_SCHPO  (O43012), DCTD_YEAST  (P06773), 
FCA1_CANAX  (P78594), FCY1_YEAST  (Q12178), FCYS_SCHPO  (O59834), 
GUAD_BACSU  (O34598), RIBD1_BUCAI (P57533), RIBD1_BUCAP (Q8K9A4), 
RIBD_ACTPL  (P50853), RIBD_AQUAE  (O66534), RIBD_ARATH  (Q8GWP5), 
RIBD_BACAM  (P70814), RIBD_BACSU  (P17618), RIBD_BUCBP  (Q89AB0), 
RIBD_CHLPN  (Q9Z735), RIBD_CHLTR  (O84735), RIBD_CORAM  (O24750), 
RIBD_ECOLI  (P25539), RIBD_HAEIN  (P44326), RIBD_MAIZE  (B6TRH4), 
RIBD_MYCTO  (P9WPH0), RIBD_MYCTU  (P9WPH1), RIBD_SYNY3  (Q55158), 
TAD2_SCHPO  (O94642), TAD2_YEAST  (P47058), TADA_AGRT5  (A9CK16), 
TADA_AQUAE  (O67050), TADA_BACSU  (P21335), TADA_BUCAI  (P57343), 
TADA_BUCAP  (Q8K9R4), TADA_BUCBP  (Q89AM8), TADA_ECO57  (Q8XA44), 
TADA_ECOL6  (Q8FF24), TADA_ECOLI  (P68398), TADA_HAEIN  (P44931), 
TADA_RICBR  (Q1RGK7), TADA_RICCN  (Q92G39), TADA_RICFE  (Q4UJW9), 
TADA_RICPR  (Q9ZCC6), TADA_RICTY  (Q68Y02), TADA_SALTI  (Q8XGY4), 
TADA_SALTY  (Q7CQ08), TADA_SHIFL  (P68397), TADA_STAAM  (Q99W51), 
TADA_STRP1  (P68999), TADA_STRP3  (P0DA20), TADA_STRP6  (Q5XE14), 
TADA_STRP8  (Q8P2R7), TADA_STRPQ  (P0DA21), TILS_THET2  (Q72IF6), 
TILS_THET8  (Q5SI38), YLXG_ALIFS  (P33968)
» More

UniProtKB/Swiss-Prot
False negative sequences
24 sequences

ABEC2_BOVIN (Q3SYR3), ABEC2_HUMAN (Q9Y235), ABEC2_MOUSE (Q9WV35), 
ABEC2_PONPY (Q694B4), ABEC4_HUMAN (Q8WW27), ABEC4_MACFA (Q8WP22), 
ABEC4_MOUSE (Q497M3), ABEC4_RAT   (Q6AXX9), ADAT3_DANRE (Q8JFW4), 
ADAT3_HUMAN (Q96EY9), ADAT3_MOUSE (Q6PAT0), ADAT3_RAT   (Q561R2), 
CDA4_ARATH  (Q9S7S2), CDA6_ARATH  (Q9SU86), CDA7_ARATH  (Q9SU87), 
CDA9_ARATH  (Q9S789), CDAT8_METKA (Q8TWU6), CDD_DICDI   (Q54I82), 
CDD_SPOPS   (Q9S3M0), RIB2_SCHPO  (P87241), RIBD_CHLMU  (Q9PLJ6), 
TAD3_SCHPO  (Q9P7N4), TAD3_YEAST  (Q9URQ3), TADA_ARATH  (Q9S7I0)
» More

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

SECA_COXBU  (Q83F06), SECA_PSEMY  (A4XQT3), SECA_PSEU5  (A4VPA3), 
SECA_SHELP  (A3QIL3), Y949_METJA  (Q58359)
» More

PDB
[Detailed view]
54 PDB

1AF2; 1ALN; 1CTT; 1CTU; 1JTK; 1MQ0; 1OX7; 1P6O; 1R5T; 1RB7; 1TIY; 1UAQ; 1UWZ; 1UX0; 1UX1; 1VQ2; 1WKQ; 1WN5; 1WN6; 1WWR; 1YSB; 1YSD; 1Z3A; 1ZAB; 2A8N; 2B3J; 2B3Z; 2D5N; 2FR5; 2FR6; 2JYW; 2KBO; 2KEM; 2M65; 2NX8; 2O3K; 2W4L; 2Z3G; 2Z3H; 2Z3J; 3DH1; 3E1U; 3EX8; 3IJF; 3IQS; 3IR2; 3OJ6; 3V4J; 3V4K; 3VM8; 3VOW; 4G3M; 4IOU; 4J4J
» More

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