Entry: PS00966

General information about the entry
Entry name PMI_I_2
Accession number PS00966
Entry type PATTERN
Date JUN-1994 (CREATED); JUN-1994 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00746
Name and characterization of the entry
DescriptionPhosphomannose isomerase type I signature 2.
Pattern H-A-Y-[LIVM]-x-G-x(2)-[LIVM]-E-x-M-A-x-S-D-N-x-[LIVM]-R-A-G-x-T-P-K.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 22 hits in 22 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 22 hits in 22 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 5
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 81.48 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,zinc
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
MANA_ECOLI  (P00946), MANA_SALTY  (P25081), MANA_SHIFL  (Q83KZ1), 
MPI2_ARATH  (Q9FZH5), MPI_ASHGO   (Q75AB5), MPI_ASPFU   (Q66WM4), 
MPI_BOVIN   (Q3SZI0), MPI_CAEEL   (P34650), MPI_CANAL   (P34948), 
MPI_CANGA   (Q76IQ2), MPI_CRYNJ   (Q9HFU4), MPI_DICDI   (Q54PA0), 
MPI_ECHMU   (Q9GP38), MPI_EMENI   (P29951), MPI_HUMAN   (P34949), 
MPI_MACFA   (Q8HXX2), MPI_MOUSE   (Q924M7), MPI_NEUCR   (Q870Y1), 
MPI_PANTR   (A5A6K3), MPI_PICAD   (Q8J093), MPI_RAT     (Q68FX1), 
MPI_YEAST   (P29952)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
MANA1_BACSU (O31646), MANA2_BACSU (O05511), MANA3_BACSU (P39841), 
MANA_STRMU  (Q59935), MPI1_ARATH  (Q9M884)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1PMI; 2WFP; 3H1M; 3H1W; 3H1Y;

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