Entry: PS01039

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General information about the entry

Entry name [info] SBP_BACTERIAL_3
Accession [info] PS01039
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00798

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 3 signature.
Pattern [info]
G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}-
{GL}-[LIVMAGN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 67 in 67 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits
Number of false positive hits 29 in 29 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 56.72 %
Recall (true positives / (true positives + false negatives)) 84.44 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

AABA_DICNO  (P39906), AAPJ_RHIL3  (Q52812), ARGT_ECOLI  (P09551), 
ARGT_SALTY  (P02911), ARTI_ECOLI  (P30859), ARTI_HAEIN  (P45091), 
ARTJ_ECOLI  (P30860), ARTP_BACSU  (P54535), FLIY_ECOL6  (P0AEN0), 
FLIY_ECOLI  (P0AEM9), GLNH_BACSU  (O34563), GLNH_ECO57  (P0AEQ5), 
GLNH_ECOL6  (P0AEQ4), GLNH_ECOLI  (P0AEQ3), GLNH_GEOSE  (P27676), 
GLUB_COREF  (Q8RQL6), GLUB_CORGL  (P48242), HISJ_CAMJE  (Q46125), 
HISJ_ECO57  (P0AEU2), HISJ_ECOL6  (P0AEU1), HISJ_ECOLI  (P0AEU0), 
HISJ_NEIGO  (Q06758), HISJ_SALTY  (P02910), LAPT_PASHA  (P49618), 
NOCT_AGRT5  (P35120), OCCT_AGRT4  (P0A4F9), OCCT_RHIML  (P72298), 
OCCT_RHIRD  (P0A4F8), PATH_VIBHA  (P52626), PEB1A_CAMJE (Q0P9X8), 
PEB1A_CAMJJ (A1VZQ4), PHEC_PSEAE  (Q01269), TCYA_BACSU  (P42199), 
Y1080_HAEIN (P45024), YCKB_BACSU  (P42400), YHDW_ECO57  (P58068), 
YHDW_ECOLI  (P45766), YXEM_BACSU  (P54952)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

ARTJ_CHLTR  (O84385), BZTA_RHOCB  (Q52663), GLTI_ECOLI  (P37902), 
GLTI_SALTY  (Q9ZF60), TCYJ_BACSU  (O34406), TCYK_BACSU  (O34852), 
Y4TE_RHISN  (P55659)
» More

UniProtKB/Swiss-Prot
False positive sequences
29 sequences

DCL3_ARATH  (Q9LXW7), ECHD2_BOVIN (Q2TBT3), HIS61_PROMM (Q7V8Q8), 
HIS6_ANAVT  (Q3MEF5), HIS6_CARHZ  (Q3AD48), HIS6_METKA  (Q8TYW8), 
HIS6_NOSS1  (Q8YT31), HIS6_PROMT  (Q46GY9), HIS6_PYRAE  (Q8ZY16), 
HIS6_SULSO  (O33774), HIS6_SYNP6  (Q5N0H4), HIS6_THEEB  (Q8DJN7), 
HIS6_ZYMMO  (Q5NMD6), HP251_BOVIN (Q2KIX7), MDTB_XENBS  (D3V7P3), 
MURG_PSYIN  (A1SU19), MUTS_BRADU  (Q89VX1), MUTS_NITHX  (Q1QQJ4), 
MUTS_NITWN  (Q3SVD4), MUTS_RHOPS  (Q13ED0), PHNN_SALAR  (A9MGI9), 
SSUB2_XANAC (Q8PHQ3), SYA_NITHX   (Q1QMV7), SYFB_METAC  (Q8TPF7), 
SYFB_METMA  (Q8PTA5), Y2481_CLOTE (Q891A0), Y3156_SHESM (Q0HFE0), 
Y3815_SHEON (Q8EAS7), Y811_SHESR  (Q0HYJ5)
» More

PDB
[Detailed view]
11 PDB

1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25

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