Entry: PS01039

General information about the entry
Entry name SBP_BACTERIAL_3
Accession number PS01039
Entry type PATTERN
Date NOV-1995 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00798
Name and characterization of the entry
DescriptionBacterial extracellular solute-binding proteins, family 3 signature.
Pattern G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}- {GL}-[LIVMAGN].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 67 hits in 67 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 38 hits in 38 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 29 hits in 29 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 56.72 %
  • Recall (true hits / (true hits + false negatives)): 84.44 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AABA_DICNO  (P39906), AAPJ_RHIL3  (Q52812), ARGT_ECOLI  (P09551), 
ARGT_SALTY  (P02911), ARTI_ECOLI  (P30859), ARTI_HAEIN  (P45091), 
ARTJ_ECOLI  (P30860), ARTP_BACSU  (P54535), FLIY_ECOL6  (P0AEN0), 
FLIY_ECOLI  (P0AEM9), GLNH_BACSU  (O34563), GLNH_ECO57  (P0AEQ5), 
GLNH_ECOL6  (P0AEQ4), GLNH_ECOLI  (P0AEQ3), GLNH_GEOSE  (P27676), 
GLUB_COREF  (Q8RQL6), GLUB_CORGL  (P48242), HISJ_CAMJE  (Q46125), 
HISJ_ECO57  (P0AEU2), HISJ_ECOL6  (P0AEU1), HISJ_ECOLI  (P0AEU0), 
HISJ_NEIGO  (Q06758), HISJ_SALTY  (P02910), LAPT_PASHA  (P49618), 
NOCT_AGRT5  (P35120), OCCT_AGRT4  (P0A4F9), OCCT_RHIML  (P72298), 
OCCT_RHIRD  (P0A4F8), PATH_VIBHA  (P52626), PEB1A_CAMJE (Q0P9X8), 
PEB1A_CAMJJ (A1VZQ4), PHEC_PSEAE  (Q01269), TCYA_BACSU  (P42199), 
Y1080_HAEIN (P45024), YCKB_BACSU  (P42400), YHDW_ECO57  (P58068), 
YHDW_ECOLI  (P45766), YXEM_BACSU  (P54952)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ARTJ_CHLTR  (O84385), BZTA_RHOCB  (Q52663), GLTI_ECOLI  (P37902), 
GLTI_SALTY  (Q9ZF60), TCYJ_BACSU  (O34406), TCYK_BACSU  (O34852), 
Y4TE_RHISN  (P55659)
False positive hits (sequences which do not belong to the set under consideration):
DCL3_ARATH  (Q9LXW7), ECHD2_BOVIN (Q2TBT3), HIS61_PROMM (Q7V8Q8), 
HIS6_ANAVT  (Q3MEF5), HIS6_CARHZ  (Q3AD48), HIS6_METKA  (Q8TYW8), 
HIS6_NOSS1  (Q8YT31), HIS6_PROMT  (Q46GY9), HIS6_PYRAE  (Q8ZY16), 
HIS6_SULSO  (O33774), HIS6_SYNP6  (Q5N0H4), HIS6_THEEB  (Q8DJN7), 
HIS6_ZYMMO  (Q5NMD6), HP251_BOVIN (Q2KIX7), MDTB_XENBS  (D3V7P3), 
MURG_PSYIN  (A1SU19), MUTS_BRAJA  (Q89VX1), MUTS_NITHX  (Q1QQJ4), 
MUTS_NITWN  (Q3SVD4), MUTS_RHOPS  (Q13ED0), PHNN_SALAR  (A9MGI9), 
SSUB2_XANAC (Q8PHQ3), SYA_NITHX   (Q1QMV7), SYFB_METAC  (Q8TPF7), 
SYFB_METMA  (Q8PTA5), Y2481_CLOTE (Q891A0), Y3156_SHESM (Q0HFE0), 
Y3815_SHEON (Q8EAS7), Y811_SHESR  (Q0HYJ5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25;

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