Entry: PS01039

General information about the entry

Entry name [info] SBP_BACTERIAL_3
Accession [info] PS01039
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00798

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 3 signature.
Pattern [info]
G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}-
{GL}-[LIVMAGN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 67 in 67 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits 0
Number of false positive hits 29 in 29 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 56.72 %
Recall (true positives / (true positives + false negatives)) 84.44 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

AABA_DICNO  (P39906), AAPJ_RHIL3  (Q52812), ARGT_ECOLI  (P09551), 
ARGT_SALTY  (P02911), ARTI_ECOLI  (P30859), ARTI_HAEIN  (P45091), 
ARTJ_ECOLI  (P30860), ARTP_BACSU  (P54535), FLIY_ECOL6  (P0AEN0), 
FLIY_ECOLI  (P0AEM9), GLNH_BACSU  (O34563), GLNH_ECO57  (P0AEQ5), 
GLNH_ECOL6  (P0AEQ4), GLNH_ECOLI  (P0AEQ3), GLNH_GEOSE  (P27676), 
GLUB_COREF  (Q8RQL6), GLUB_CORGL  (P48242), HISJ_CAMJE  (Q46125), 
HISJ_ECO57  (P0AEU2), HISJ_ECOL6  (P0AEU1), HISJ_ECOLI  (P0AEU0), 
HISJ_NEIGO  (Q06758), HISJ_SALTY  (P02910), LAPT_MANHA  (P49618), 
NOCT_AGRFC  (P35120), OCCT_AGRT4  (P0A4F9), OCCT_RHIML  (P72298), 
OCCT_RHIRD  (P0A4F8), PATH_VIBHA  (P52626), PEB1A_CAMJE (Q0P9X8), 
PEB1A_CAMJJ (A1VZQ4), PHEC_PSEAE  (Q01269), TCYA_BACSU  (P42199), 
Y1080_HAEIN (P45024), YCKB_BACSU  (P42400), YHDW_ECO57  (P58068), 
YHDW_ECOLI  (P45766), YXEM_BACSU  (P54952)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

ARTJ_CHLTR  (O84385), BZTA_RHOCB  (Q52663), GLTI_ECOLI  (P37902), 
GLTI_SALTY  (Q9ZF60), TCYJ_BACSU  (O34406), TCYK_BACSU  (O34852), 
Y4TE_RHISN  (P55659)
» More

UniProtKB/Swiss-Prot
False positive sequences
29 sequences

DCL3_ARATH  (Q9LXW7), ECHD2_BOVIN (Q2TBT3), HIS61_PROMM (Q7V8Q8), 
HIS6_ANAVT  (Q3MEF5), HIS6_CARHZ  (Q3AD48), HIS6_METKA  (Q8TYW8), 
HIS6_NOSS1  (Q8YT31), HIS6_PROMT  (Q46GY9), HIS6_PYRAE  (Q8ZY16), 
HIS6_SULSO  (O33774), HIS6_SYNP6  (Q5N0H4), HIS6_THEEB  (Q8DJN7), 
HIS6_ZYMMO  (Q5NMD6), HP251_BOVIN (Q2KIX7), MDTB_XENBS  (D3V7P3), 
MURG_PSYIN  (A1SU19), MUTS_BRADU  (Q89VX1), MUTS_NITHX  (Q1QQJ4), 
MUTS_NITWN  (Q3SVD4), MUTS_RHOPS  (Q13ED0), PHNN_SALAR  (A9MGI9), 
SSUB2_XANAC (Q8PHQ3), SYA_NITHX   (Q1QMV7), SYFB_METAC  (Q8TPF7), 
SYFB_METMA  (Q8PTA5), Y2481_CLOTE (Q891A0), Y3156_SHESM (Q0HFE0), 
Y3815_SHEON (Q8EAS7), Y811_SHESR  (Q0HYJ5)
» More

PDB
[Detailed view]
15 PDB

1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25; 4P0I; 4POW; 4POX; 4PP0
» More

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