Entry: PS01039

General information about the entry

Entry name [info] SBP_BACTERIAL_3
Accession [info] PS01039
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00798

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 3 signature.
Pattern [info]
G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}-
{GL}-[LIVMAGN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 67 in 67 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits 0
Number of false positive hits 29 in 29 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 56.72 %
Recall (true positives / (true positives + false negatives)) 84.44 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

AABA_DICNO  (P39906    ), AAPJ_RHIL3  (Q52812    ), ARGT_ECOLI  (P09551    ), 
ARGT_SALTY  (P02911    ), ARTI_ECOLI  (P30859    ), ARTI_HAEIN  (P45091    ), 
ARTJ_ECOLI  (P30860    ), ARTP_BACSU  (P54535    ), FLIY_ECOL6  (P0AEN0    ), 
FLIY_ECOLI  (P0AEM9    ), GLNH_BACSU  (O34563    ), GLNH_ECO57  (P0AEQ5    ), 
GLNH_ECOL6  (P0AEQ4    ), GLNH_ECOLI  (P0AEQ3    ), GLNH_GEOSE  (P27676    ), 
GLUB_COREF  (Q8RQL6    ), GLUB_CORGL  (P48242    ), HISJ_CAMJE  (Q46125    ), 
HISJ_ECO57  (P0AEU2    ), HISJ_ECOL6  (P0AEU1    ), HISJ_ECOLI  (P0AEU0    ), 
HISJ_NEIGO  (Q06758    ), HISJ_SALTY  (P02910    ), LAPT_MANHA  (P49618    ), 
NOCT_AGRFC  (P35120    ), OCCT_AGRT4  (P0A4F9    ), OCCT_RHIML  (P72298    ), 
OCCT_RHIRD  (P0A4F8    ), PATH_VIBHA  (P52626    ), PEB1A_CAMJE (Q0P9X8    ), 
PEB1A_CAMJJ (A1VZQ4    ), PHEC_PSEAE  (Q01269    ), TCYA_BACSU  (P42199    ), 
Y1080_HAEIN (P45024    ), YCKB_BACSU  (P42400    ), YHDW_ECO57  (P58068    ), 
YHDW_ECOLI  (P45766    ), YXEM_BACSU  (P54952    )
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

ARTJ_CHLTR  (O84385    ), BZTA_RHOCB  (Q52663    ), GLTI_ECOLI  (P37902    ), 
GLTI_SALTY  (Q9ZF60    ), TCYJ_BACSU  (O34406    ), TCYK_BACSU  (O34852    ), 
Y4TE_SINFN  (P55659    )
» more

UniProtKB/Swiss-Prot
False positive sequences
29 sequences

DCL3_ARATH  (Q9LXW7    ), ECHD2_BOVIN (Q2TBT3    ), HIS61_PROMM (Q7V8Q8    ), 
HIS6_ANAVT  (Q3MEF5    ), HIS6_CARHZ  (Q3AD48    ), HIS6_METKA  (Q8TYW8    ), 
HIS6_NOSS1  (Q8YT31    ), HIS6_PROMT  (Q46GY9    ), HIS6_PYRAE  (Q8ZY16    ), 
HIS6_SULSO  (O33774    ), HIS6_SYNP6  (Q5N0H4    ), HIS6_THEEB  (Q8DJN7    ), 
HIS6_ZYMMO  (Q5NMD6    ), HP251_BOVIN (Q2KIX7    ), MDTB_XENBS  (D3V7P3    ), 
MURG_PSYIN  (A1SU19    ), MUTS_BRADU  (Q89VX1    ), MUTS_NITHX  (Q1QQJ4    ), 
MUTS_NITWN  (Q3SVD4    ), MUTS_RHOPS  (Q13ED0    ), PHNN_SALAR  (A9MGI9    ), 
SSUB2_XANAC (Q8PHQ3    ), SYA_NITHX   (Q1QMV7    ), SYFB_METAC  (Q8TPF7    ), 
SYFB_METMA  (Q8PTA5    ), Y2481_CLOTE (Q891A0    ), Y3156_SHESM (Q0HFE0    ), 
Y3815_SHEON (Q8EAS7    ), Y811_SHESR  (Q0HYJ5    )
» more

PDB
[Detailed view]
15 PDB

1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25; 4P0I; 4POW; 4POX; 4PP0
» more

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