Entry: PS01050

General information about the entry
Entry name YJEF_C_2
Accession number PS01050
Entry type PATTERN
Date NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00806
Name and characterization of the entry
DescriptionYjeF C-terminal domain signature 2.
Pattern [GA]-G-x-G-D-[TV]-[LT]-[STA]-G-x-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 50 hits in 50 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 50 hits in 50 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 40
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 55.56 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
NNRD_AJECG  (C0NFV9), NNRD_ASPFU  (Q4X1F8), NNRD_BACSU  (P94368), 
NNRD_BATDJ  (F4NZ38), NNRD_BORPE  (Q7VU32), NNRD_CAEBR  (A8X354), 
NNRD_CAEEL  (P32740), NNRD_CANAL  (Q59M69), NNRD_CANAW  (C4YSU5), 
NNRD_COPC7  (A8N8Z0), NNRD_EMENI  (Q5B0D6), NNRD_ENTFA  (Q833Y3), 
NNRD_ENTHI  (C4LZV8), NNRD_FLAPJ  (A6GXW4), NNRD_LACLA  (Q9CIU7), 
NNRD_LACPL  (F9UN92), NNRD_LISMO  (Q8Y6R2), NNRD_NECH7  (C7YKN8), 
NNRD_NEUCR  (Q7SHU9), NNRD_NITMS  (A9A498), NNRD_PHANO  (Q0UVK8), 
NNRD_PHATC  (B7FXE8), NNRD_POLPA  (D3BMU4), NNRD_RHOBA  (Q7UFW7), 
NNRD_STAA8  (Q2G2P8), NNRD_STRR6  (Q8DQD2), NNRD_STRTR  (P96051), 
NNRD_USTMA  (Q4P219), NNRD_YEAST  (P36059), NNR_AQUAE   (O67377), 
NNR_DICTD   (B8E2P6), NNR_ECOLI   (P31806), NNR_GLOVI   (Q7NIE6), 
NNR_HELPJ   (Q9ZJM4), NNR_HELPY   (P56176), NNR_KORCO   (B1L3W1), 
NNR_LEIBR   (A4H7T9), NNR_LEIIN   (A4HW65), NNR_LEIMA   (Q4QFL5), 
NNR_METJA   (Q58981), NNR_METKA   (Q8TX67), NNR_MOOTA   (Q2RGI2), 
NNR_MYCLE   (P37391), NNR_MYCTU   (O06250), NNR_PYRAE   (Q8ZV04), 
NNR_SYNY3   (P74217), NNR_THEEB   (Q8DGC3), NNR_THEMA   (Q9X024), 
NNR_THEYD   (B5YIM0), NNR_VIBCH   (Q9KMX5)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
NNRD1_PUCGT (E3LAQ9), NNRD2_PUCGT (E3L9T1), NNRD_AEDAE  (Q17NP0), 
NNRD_ANODA  (E3XDZ8), NNRD_ARATH  (Q94AF2), NNRD_BOVIN  (E1BNQ4), 
NNRD_CANFA  (E2QUI9), NNRD_CENSY  (A0RU82), NNRD_CIOIN  (F6RCC2), 
NNRD_CRYNJ  (Q5K8L4), NNRD_DANRE  (F1Q575), NNRD_DICDI  (Q54FJ9), 
NNRD_DROME  (Q9VVW8), NNRD_DROPS  (B5DHB2), NNRD_HALTV  (D2RXF6), 
NNRD_HUMAN  (Q8IW45), NNRD_IXOSC  (B7PBI5), NNRD_MACMU  (F7E727), 
NNRD_MOUSE  (Q9CZ42), NNRD_NATMM  (D3SQW0), NNRD_NEIG1  (Q5F8G9), 
NNRD_NEIMB  (Q9JRZ9), NNRD_NEMVE  (A7RRZ8), NNRD_PEDHC  (E0VSF4), 
NNRD_PHYPA  (A9RY03), NNRD_PONAB  (Q5R824), NNRD_RAT    (D4AAT7), 
NNRD_SCHPO  (O94347), NNRD_SORBI  (C5Y210), NNRD_VITVI  (F6HDM2), 
NNRD_XANCP  (Q8PBP3), NNR_ARCFU   (O29407), NNR_CORGL   (Q8NSS3), 
NNR_COXBU   (Q83CM5), NNR_HYPBU   (A2BLC0), NNR_METHJ   (Q2FT57), 
NNR_METTH   (O27324), NNR_SALRD   (Q2S580), NNR_THEAS   (D1BAA5), 
NNR_THEPD   (A1S0R2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1KYH; 2AX3; 2R3B; 2R3E; 3K5W; 3RPH; 3RPZ; 3RQ2; 3RQ5; 3RQ6; 3RQ8; 3RQH; 3RQQ; 3RQX; 3RRB; 3RRE; 3RRF; 3RRJ; 3RS8; 3RS9; 3RSF; 3RSG; 3RSQ; 3RSS; 3RT7; 3RT9; 3RTA; 3RTB; 3RTC; 3RTD; 3RTE; 3RTG; 3RU2; 3RU3;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission


If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or