Entry: PS01073

General information about the entry
Entry name RIBOSOMAL_L24E
Accession number PS01073
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00824
Name and characterization of the entry
DescriptionRibosomal protein L24e signature.
Pattern [FY]-x-[GSHE]-x(2)-[IVLF]-x-P-[GA]-x-G-x(2)-[FYV]-x-[KRHE]-x-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 86 hits in 86 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 86 hits in 86 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.66 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RL241_ARATH (Q42347), RL242_ARATH (P38666), RL24A_SCHPO (Q92354), 
RL24A_YEAST (P04449), RL24B_SCHPO (O74884), RL24B_YEAST (P24000), 
RL24E_ARCFU (O29492), RL24E_CALMQ (A8MB69), RL24E_HALMA (P14116), 
RL24E_HALS3 (B0R501), RL24E_HALSA (P61120), RL24E_HYPBU (A2BK96), 
RL24E_META3 (A6UT49), RL24E_METAC (Q8TQL7), RL24E_METBU (Q12Z95), 
RL24E_METJA (P54064), RL24E_METKA (Q8TVE8), RL24E_METM5 (A4FYI7), 
RL24E_METM6 (A9A7E7), RL24E_METM7 (A6VJU5), RL24E_METMA (Q8PU76), 
RL24E_METMP (P61123), RL24E_METTH (O26357), RL24E_METVS (A6USH5), 
RL24E_PICTO (Q6KZI5), RL24E_PYRAB (Q9V0W3), RL24E_PYRAE (Q8ZTA6), 
RL24E_PYRAR (A4WLP2), RL24E_PYRCJ (A3MTA8), RL24E_PYRFU (Q8U158), 
RL24E_PYRHO (P61124), RL24E_PYRIL (A1RS34), RL24E_PYRKO (Q5JGR5), 
RL24E_PYRNV (B1Y9V3), RL24E_STAMF (A3DMR8), RL24E_SULAC (Q4JAV2), 
RL24E_SULIA (C3MZM3), RL24E_SULIK (C4KIV3), RL24E_SULIL (C3MRJ8), 
RL24E_SULIM (C3MY94), RL24E_SULIN (C3NFS8), RL24E_SULIY (C3N7P5), 
RL24E_SULSO (Q980Q6), RL24E_SULTO (Q975Z9), RL24E_THEAC (Q9HJ58), 
RL24E_THEGJ (C5A1V7), RL24E_THEON (B6YWH7), RL24E_THEPD (A1RXH7), 
RL24E_THESM (C6A1J2), RL24E_THEVO (Q97BK6), RL24_ASHGO  (Q752U6), 
RL24_BOVIN  (Q862I1), RL24_BRABE  (Q8ISQ3), RL24_CANGA  (Q6FXY9), 
RL24_CICAR  (O65743), RL24_DANRE  (Q8JGR4), RL24_DEBHA  (Q6BNC2), 
RL24_DICDI  (Q54VN6), RL24_FELCA  (Q66WF5), RL24_GILMI  (Q9DFQ7), 
RL24_HORVU  (P50888), RL24_HUMAN  (P83731), RL24_ICTPU  (Q90YU3), 
RL24_KLULA  (P38665), RL24_MACFA  (P61122), RL24_MOUSE  (Q8BP67), 
RL24_NEUCR  (Q7SDU2), RL24_PAGMA  (Q6Y263), RL24_PRUAV  (Q9FUL4), 
RL24_RAT    (P83732), RL24_SCHJA  (Q7Z0T8), RL24_YARLI  (Q6C4U6), 
RLP24_ARATH (O22165), RLP24_ASHGO (Q759D1), RLP24_BOVIN (Q3SZ12), 
RLP24_CAEEL (Q17606), RLP24_CANGA (Q6FPU0), RLP24_DANRE (Q7ZTZ2), 
RLP24_DICDI (Q86B05), RLP24_DROME (Q9VGN9), RLP24_HUMAN (Q9UHA3), 
RLP24_MOUSE (Q99L28), RLP24_PONAB (Q5RF04), RLP24_RAT   (Q6P6G7), 
RLP24_SCHPO (Q10353), RLP24_YARLI (Q6CF69)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RL24E_AERPE (Q9Y9A7), RL24E_METS3 (A5UJN1), RL24E_METS5 (A4YCQ3), 
RL24E_METTP (A0B603), RL24_CAEEL  (O01868), RL24_DROME  (Q9VJY6), 
RL24_PLUXY  (Q6F444), RL24_TETTS  (P0DJ54), RLP24_DEBHA (Q6BH34), 
RLP24_ENCCU (Q8SSF6), RLP24_KLULA (Q6CNW3)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1FFK; 1JJ2; 1K5Y; 1K73; 1K8A; 1K9M; 1KC8; 1KD1; 1KQS; 1M1K; 1M90; 1N8R; 1NJI; 1Q7Y; 1Q81; 1Q82; 1Q86; 1QVF; 1QVG; 1S1I; 1S72; 1VQ4; 1VQ5; 1VQ6; 1VQ7; 1VQ8; 1VQ9; 1VQK; 1VQL; 1VQM; 1VQN; 1VQO; 1VQP; 1W2B; 1YHQ; 1YI2; 1YIJ; 1YIT; 1YJ9; 1YJN; 1YJW; 2OTJ; 2OTL; 2QA4; 2QEX; 2X7N; 3CC2; 3CC4; 3CC7; 3CCE; 3CCJ; 3CCL; 3CCM; 3CCQ; 3CCR; 3CCS; 3CCU; 3CCV; 3CD6; 3CMA; 3CME; 3CPW; 3CXC; 3G4S; 3G6E; 3G71; 3I55; 3I56; 3IZS; 3J21; 3O58; 3O5H; 3OW2; 3U5E; 3U5I; 4B6A;

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