Entry: PS01112

General information about the entry
Entry name RNA_POL_N_8KD
Accession number PS01112
Entry type PATTERN
Date NOV-1995 (CREATED); MAR-2002 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00856
Name and characterization of the entry
DescriptionRNA polymerases N / 8 Kd subunits signature.
Pattern [LIVMFD]-[LIVMFP]-P-[LIVM]-x-C-[FL]-[ST]-C-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 72 hits in 72 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 72 hits in 72 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 98.63 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 6,zinc
  • `Interesting' site in the pattern: 9,zinc
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RPAB5_ARATH (Q9SYA6), RPAB5_ASHGO (Q75BV8), RPAB5_BOVIN (Q32P78), 
RPAB5_BRANA (Q39290), RPAB5_CAEBR (A8Y1E9), RPAB5_CAEEL (Q9GR61), 
RPAB5_CHILA (Q6QN04), RPAB5_DICDI (Q55AB6), RPAB5_DROME (Q9VC49), 
RPAB5_ENCCU (Q8SRS6), RPAB5_HUMAN (P62875), RPAB5_MOUSE (P62876), 
RPAB5_SCHPO (O13877), RPAB5_YEAST (P22139), RPB10_ASFB7 (P42488), 
RPB10_ASFK5 (P0C982), RPB10_ASFM2 (P0C980), RPB10_ASFP4 (P0C979), 
RPB10_ASFWA (P0C981), RPON_AERPE  (Q9YB47), RPON_ARCFU  (O29135), 
RPON_HALLT  (B9LPW4), RPON_HALMA  (P29199), RPON_HALS3  (B0R4Y6), 
RPON_HALSA  (Q9HQJ1), RPON_HALWD  (Q18G60), RPON_HYPBU  (A2BK83), 
RPON_METAC  (Q8TT41), RPON_METB6  (A7IAH1), RPON_METBF  (Q46CK8), 
RPON_METBU  (Q12TI4), RPON_METHJ  (Q2FTN7), RPON_METJA  (Q57649), 
RPON_METKA  (Q8TVB4), RPON_METLZ  (A2SSV3), RPON_METM5  (A4FWK8), 
RPON_METM6  (A9A9Y7), RPON_METM7  (A6VGR3), RPON_METMA  (Q8PW43), 
RPON_METMJ  (A3CWI3), RPON_METMP  (Q6LXM4), RPON_METPE  (B8GEG1), 
RPON_METS5  (A4YIM8), RPON_METTH  (O26147), RPON_METTP  (A0B6E7), 
RPON_METVS  (A6UPX1), RPON_NANEQ  (Q74MB5), RPON_NATPD  (Q3IQT2), 
RPON_PICTO  (Q6L292), RPON_PYRAB  (P60291), RPON_PYRAE  (Q8ZYP9), 
RPON_PYRAR  (A4WNA8), RPON_PYRCJ  (A3MXZ9), RPON_PYRFU  (P60292), 
RPON_PYRHO  (O59298), RPON_PYRIL  (A1RSD9), RPON_PYRKO  (Q5JJC9), 
RPON_PYRNV  (B1YC34), RPON_STAMF  (A3DMR0), RPON_SULAC  (P39472), 
RPON_SULIA  (C3N058), RPON_SULIK  (C4KJ97), RPON_SULIL  (C3MJQ1), 
RPON_SULIM  (C3MZ09), RPON_SULIN  (C3NMP6), RPON_SULIY  (C3N8S2), 
RPON_SULSO  (Q980Z8), RPON_SULTO  (Q96YW4), RPON_THEAC  (Q9HL09), 
RPON_THEON  (B6YSQ7), RPON_THEVO  (Q979K0), RPON_UNCMA  (Q0W8C7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RPON_CALMQ  (A8M9S4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1EF4; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS;

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