Entry: PS01214

General information about the entry
Entry name UPF0016
Accession number PS01214
Entry type PATTERN
Date NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00934
Name and characterization of the entry
DescriptionUncharacterized protein family UPF0016 signature.
Pattern E-[LIVM]-G-D-K-T-F-[LIVMF](2)-A.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 9 hits in 9 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 9 hits in 9 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 45.00 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
GDT11_ARATH (Q94AX5), GDT12_ARATH (Q9T0H9), GDT12_ORYSJ (Q2R2Z4), 
GDT1_YEAST  (P38301), TM165_HUMAN (Q9HC07), TM165_MOUSE (P52875), 
TM165_RAT   (Q4V899), Y615_SYNY3  (P52876), YD68_SCHPO  (Q10320)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
GDT11_ORYSI (B8AAM2), GDT11_ORYSJ (Q5NAY7), GDT13_ARATH (Q93Y38), 
GDT13_ORYSI (A2ZE50), GDT13_ORYSJ (Q2R4J1), GDT14_ARATH (Q9C6M1), 
GDT14_ORYSI (A2YXC7), GDT14_ORYSJ (Q6ZIB9), GDT15_ARATH (Q9SX28), 
GDT15_ORYSJ (B9G125), YLY5_SCHPO  (Q9P7Q0)
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