Entry: PS01227

Forthcoming changes to the profile format
General information about the entry

Entry name [info] UPF0012
Accession [info] PS01227
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00943

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0012 signature.
Pattern [info]
[GTAL]-x(2)-[IVT]-C-Y-D-[LIVM]-x-F-P-x(9)-[GD].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 21 in 21 different sequences
Number of true positive hits 21 in 21 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 65.62 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
21 sequences

NFT1_CAEEL  (O76463), NIT1_BOVIN  (Q32LH4), NIT1_DICDI  (Q557J5), 
NIT1_HUMAN  (Q86X76), NIT1_MOUSE  (Q8VDK1), NIT1_RAT    (Q7TQ94), 
NIT2_DICDI  (Q54JM9), NIT2_YEAST  (P47016), NIT3_YEAST  (P49954), 
NIT_ARTNI   (Q93NG1), Y480_MYCTO  (P9WJ00), Y480_MYCTU  (P9WJ01), 
Y601_SYNY3  (P55175), YAFV_ECOLI  (Q47679), YAG5_STAAU  (P55177), 
YAG5_STALU  (P55178), YAUB_SCHPO  (Q10166), YBEM_ECO57  (P58054), 
YBEM_ECOLI  (P39874), YHCX_BACSU  (P54608), YPQQ_PSEPH  (P55176)
» More

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

MTNU_BACSU  (O31664), NIT2A_XENLA (Q6IR61), NIT2B_XENLA (Q6INI7), 
NIT2_BOVIN  (Q2T9R6), NIT2_DANRE  (Q4VBV9), NIT2_HUMAN  (Q9NQR4), 
NIT2_MOUSE  (Q9JHW2), NIT2_PONAB  (Q5R4L6), NIT2_RAT    (Q497B0), 
NIT2_XENTR  (Q28IE5), RSAM_PSESP  (Q75SP7)
» More

PDB
[Detailed view]
4 PDB

1EMS; 1F89; 4HG3; 4HG5

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission