Entry: PS01227

General information about the entry
Entry name UPF0012
Accession number PS01227
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00943
Name and characterization of the entry
DescriptionUncharacterized protein family UPF0012 signature.
Pattern [GTAL]-x(2)-[IVT]-C-Y-D-[LIVM]-x-F-P-x(9)-[GD].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 19 hits in 19 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 19 hits in 19 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 63.33 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
NFT1_CAEEL  (O76463), NIT1_BOVIN  (Q32LH4), NIT1_DICDI  (Q557J5), 
NIT1_HUMAN  (Q86X76), NIT1_MOUSE  (Q8VDK1), NIT1_RAT    (Q7TQ94), 
NIT2_DICDI  (Q54JM9), NIT2_YEAST  (P47016), NIT3_YEAST  (P49954), 
Y480_MYCTU  (Q11146), Y601_SYNY3  (P55175), YAFV_ECOLI  (Q47679), 
YAG5_STAAU  (P55177), YAG5_STALU  (P55178), YAUB_SCHPO  (Q10166), 
YBEM_ECO57  (P58054), YBEM_ECOLI  (P39874), YHCX_BACSU  (P54608), 
YPQQ_PSEFL  (P55176)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
MTNU_BACSU  (O31664), NIT2A_XENLA (Q6IR61), NIT2B_XENLA (Q6INI7), 
NIT2_BOVIN  (Q2T9R6), NIT2_DANRE  (Q4VBV9), NIT2_HUMAN  (Q9NQR4), 
NIT2_MOUSE  (Q9JHW2), NIT2_PONAB  (Q5R4L6), NIT2_RAT    (Q497B0), 
NIT2_XENTR  (Q28IE5), RSAM_PSESP  (Q75SP7)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1EMS; 1F89;

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