Entry: PS01227

General information about the entry

Entry name [info] UPF0012
Accession [info] PS01227
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00943

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0012 signature.
Pattern [info]
[GTAL]-x(2)-[IVT]-C-Y-D-[LIVM]-x-F-P-x(9)-[GD].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 21 in 21 different sequences
Number of true positive hits 21 in 21 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 65.62 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
21 sequences

NFT1_CAEEL  (O76463), NIT1_BOVIN  (Q32LH4), NIT1_DICDI  (Q557J5), 
NIT1_HUMAN  (Q86X76), NIT1_MOUSE  (Q8VDK1), NIT1_RAT    (Q7TQ94), 
NIT2_DICDI  (Q54JM9), NIT2_YEAST  (P47016), NIT3_YEAST  (P49954), 
NIT_ARTNI   (Q93NG1), Y480_MYCTO  (P9WJ00), Y480_MYCTU  (P9WJ01), 
Y601_SYNY3  (P55175), YAFV_ECOLI  (Q47679), YAG5_STAAU  (P55177), 
YAG5_STALU  (P55178), YAUB_SCHPO  (Q10166), YBEM_ECO57  (P58054), 
YBEM_ECOLI  (P39874), YHCX_BACSU  (P54608), YPQQ_PSEPH  (P55176)
» More

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

MTNU_BACSU  (O31664), NIT2A_XENLA (Q6IR61), NIT2B_XENLA (Q6INI7), 
NIT2_BOVIN  (Q2T9R6), NIT2_DANRE  (Q4VBV9), NIT2_HUMAN  (Q9NQR4), 
NIT2_MOUSE  (Q9JHW2), NIT2_PONAB  (Q5R4L6), NIT2_RAT    (Q497B0), 
NIT2_XENTR  (Q28IE5), RSAM_PSESP  (Q75SP7)
» More

PDB
[Detailed view]
4 PDB

1EMS; 1F89; 4HG3; 4HG5

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