PROSITE entry PS01326
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General information about the entry
Entry name [info] | DAP_EPIMERASE |
Accession [info] | PS01326 |
Entry type [info] | PATTERN |
Date [info] |
01-JUL-1999 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC01029 |
Associated ProRule [info] | PRU10125 |
Name and characterization of the entry
Description [info] | Diaminopimelate epimerase signature. |
Pattern [info] |
N-x-[DN]-[GS]-[SENGFT]-x(4)-C-[GI]-N-[GA]-x-R. |
Numerical results [info]
Total number of hits | 413 in 413 different sequences |
Number of true positive hits | 413 in 413 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 10 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 97.64 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | active_site at position 7 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
413 sequences
DAPF1_NOSS1 (Q8YVD0), DAPF_ACAM1 (B0C312), DAPF_ACET2 (A3DK16), DAPF_ACIAD (Q6F950), DAPF_ACIB3 (B7GY71), DAPF_ACIB5 (B7I5Y5), DAPF_ACIBC (B2HX82), DAPF_ACIBS (B0VT30), DAPF_ACIBT (A3M804), DAPF_ACIBY (B0VDN4), DAPF_ACIC1 (A0LUZ5), DAPF_ACICJ (A5G1F7), DAPF_ACIET (B9MFT0), DAPF_ACTP2 (A3N2H9), DAPF_ACTP7 (B3GYL3), DAPF_ACTPJ (B0BRC5), DAPF_ACTSZ (A6VQR8), DAPF_AERHH (A0KFI1), DAPF_AERS4 (A4SRW9), DAPF_AFIC5 (B6JAP3), DAPF_AGARV (C4Z900), DAPF_AGRFC (Q8UC03), DAPF_ALCBS (Q0VM18), DAPF_ALIF1 (Q5E1W7), DAPF_ALISL (B6EP85), DAPF_ALKEH (Q0ACL9), DAPF_ALKMQ (A6TRX5), DAPF_ALKOO (A8MH77), DAPF_ALLAM (B9JUB9), DAPF_AQUAE (O67693), DAPF_ARATH (Q9LFG2), DAPF_ARCFU (O29511), DAPF_AROAE (Q5P2V2), DAPF_AZOPC (B6YS11), DAPF_AZOSB (A1K306), DAPF_AZOVD (C1DJ56), DAPF_BACAA (C3PDH0), DAPF_BACAC (C3LC72), DAPF_BACAH (A0RKC7), DAPF_BACAN (Q81XR2), DAPF_BACC0 (B7JDJ2), DAPF_BACC1 (Q72YE7), DAPF_BACC2 (B7IMV5), DAPF_BACC3 (C1EX98), DAPF_BACC4 (B7HBI0), DAPF_BACC7 (B7HUS8), DAPF_BACCN (A7GUE1), DAPF_BACCR (Q816D1), DAPF_BACCZ (Q632C7), DAPF_BACFR (Q64SY7), DAPF_BACHK (Q6HBW8), DAPF_BACLD (Q65FD6), DAPF_BACMK (A9VN01), DAPF_BACP2 (A8FH15), DAPF_BACSU (O32114), DAPF_BACTN (Q8AAB7), DAPF_BACVZ (A7Z8D3), DAPF_BARBK (A1UQV5), DAPF_BARHE (Q6G1L7), DAPF_BARQU (Q6FYC7), DAPF_BART1 (A9IZW1), DAPF_BAUCH (Q1LTX0), DAPF_BEII9 (B2IEM1), DAPF_BLOFL (Q7VRM5), DAPF_BLOPB (Q491Z7), DAPF_BRADU (Q89X45), DAPF_BRAHW (C0QZX1), DAPF_BRASB (A5E915), DAPF_BRASO (A4YKA5), DAPF_BRUA1 (B2S885), DAPF_BRUA2 (Q2YLR4), DAPF_BRUA4 (A6WXE4), DAPF_BRUAB (Q57AW6), DAPF_BRUC2 (A9M8R8), DAPF_BRUMB (C0RFH7), DAPF_BRUME (Q8YJF0), DAPF_BRUO2 (A5VSQ7), DAPF_BRUSI (B0CIT6), DAPF_BRUSU (Q8FYF0), DAPF_BUCA5 (B8D8F1), DAPF_BUCAI (P57649), DAPF_BUCAP (Q8K901), DAPF_BUCAT (B8D8A8), DAPF_BUCBP (P59582), DAPF_BURCM (Q0BAY6), DAPF_BURM7 (A3MRQ6), DAPF_BURM9 (A2S862), DAPF_BURMA (Q62EZ3), DAPF_BURMS (A1V7L3), DAPF_BURP0 (A3NQ71), DAPF_BURP6 (A3N4H9), DAPF_BURPS (Q63YH7), DAPF_BURTA (Q2T269), DAPF_BURVG (A4JIQ6), DAPF_CALS4 (Q8R9S4), DAPF_CAMJ8 (A8FNJ1), DAPF_CAMJD (A7H5P5), DAPF_CAMJE (Q9PMD8), DAPF_CAMJJ (A1W1D0), DAPF_CAMJR (Q5HSQ5), DAPF_CAMLR (B9KED6), DAPF_CARHZ (Q3AC09), DAPF_CAUSK (B0T542), DAPF_CAUVC (Q9A280), DAPF_CAUVN (B8GVW2), DAPF_CELJU (B3PEI8), DAPF_CERS4 (Q3IZB6), DAPF_CHESB (Q11CW3), DAPF_CHLMU (Q9PJW2), DAPF_CHLPN (Q9Z833), DAPF_CHLT2 (B0B802), DAPF_CHLTA (Q3KLS0), DAPF_CHLTB (B0BC67), DAPF_CHLTE (Q8KAX9), DAPF_CHLTR (O84437), DAPF_CHRSD (Q1QSV1), DAPF_CHRVO (Q7NV18), DAPF_CLAM3 (A5CSL3), DAPF_CLASE (B0RHB0), DAPF_CLOAB (Q97FV2), DAPF_CLOPE (Q46185), DAPF_COLP3 (Q48AR8), DAPF_CORA7 (C3PGX6), DAPF_COREF (Q8FPE1), DAPF_CORGB (A4QEV1), DAPF_CORGL (Q8NP73), DAPF_COXB1 (B6J630), DAPF_COXB2 (B6J395), DAPF_COXBN (A9KGY8), DAPF_COXBR (A9N9J6), DAPF_COXBU (Q83AD4), DAPF_CROS8 (A7MQK2), DAPF_CUPMC (Q1LS37), DAPF_CUPNH (Q0KF42), DAPF_CUPPJ (Q476V3), DAPF_CUPTR (B2AGE5), DAPF_CYAP4 (B8HU20), DAPF_DECAR (Q47JN0), DAPF_DESAH (C0QAP3), DAPF_DESAP (B1I545), DAPF_DESDA (B8IZX7), DAPF_DESHD (B8FSD4), DAPF_DESRM (A4J568), DAPF_ECO24 (A7ZU14), DAPF_ECO27 (B7UNC6), DAPF_ECO45 (B7MH73), DAPF_ECO55 (B7L969), DAPF_ECO57 (P0A6K2), DAPF_ECO5E (B5YY56), DAPF_ECO7I (B7NTD3), DAPF_ECO81 (B7MR29), DAPF_ECO8A (B7M611), DAPF_ECOBW (C4ZZ73), DAPF_ECODH (B1XAH6), DAPF_ECOHS (A8A6R7), DAPF_ECOL5 (Q0TAR6), DAPF_ECOL6 (Q8FBN6), DAPF_ECOLC (B1IW95), DAPF_ECOLI (P0A6K1), DAPF_ECOLU (B7NFB1), DAPF_ECOSM (B1LLY0), DAPF_EDWI9 (C5BBD4), DAPF_ELUMP (B2KDH2), DAPF_ENT38 (A4WG08), DAPF_ENTFA (Q838I3), DAPF_ERWT9 (B2VI49), DAPF_ERYLH (Q2NBR6), DAPF_ESCF3 (B7LU47), DAPF_FLAPJ (A6GYX5), DAPF_GEOKA (Q5KVP4), DAPF_GEOSW (C5D729), DAPF_GEOTN (A4ISE8), DAPF_GLAP5 (B8F878), DAPF_GLOC7 (B7KH06), DAPF_GLUOX (Q5FQZ4), DAPF_GRABC (Q0BS04), DAPF_HAEDU (Q7VPN0), DAPF_HAEI8 (Q4QME8), DAPF_HAEIE (A5UDX5), DAPF_HAEIG (A5UHQ4), DAPF_HAEIN (P44859), DAPF_HAHCH (Q2SQ64), DAPF_HALH5 (Q9K7F0), DAPF_HALHL (A1WWB3), DAPF_HALOH (B8CX90), DAPF_HELMI (B0TGR9), DAPF_HELP2 (B6JLE8), DAPF_HELPG (B5Z6T7), DAPF_HELPH (Q1CTW0), DAPF_HELPJ (Q9ZLR5), DAPF_HELPS (B2UTR2), DAPF_HELPY (O25290), DAPF_HERAR (A4G980), DAPF_HISS1 (Q0I572), DAPF_HISS2 (B0UWU6), DAPF_HYDS0 (B4U9P0), DAPF_IDILO (Q5QUS6), DAPF_LACPL (Q88V90), DAPF_LARHH (C1D8Q0), DAPF_LEIXX (Q6AE05), DAPF_LEPBA (B0SC36), DAPF_LEPBJ (Q04W97), DAPF_LEPBL (Q04X60), DAPF_LEPIC (Q72W63), DAPF_LEPIN (Q8F9V5), DAPF_LIGS1 (Q1WTU5), DAPF_LISIN (Q929Z7), DAPF_LISMC (C1KWW2), DAPF_LISMF (Q71Y02), DAPF_LISMH (B8DBR3), DAPF_LISMO (Q8Y5N9), DAPF_LISW6 (A0AKC4), DAPF_MAGMM (A0LE31), DAPF_MANSM (Q65RL9), DAPF_META3 (A6UTH4), DAPF_METAR (Q0W3B6), DAPF_METC4 (B7KQM2), DAPF_METEP (A9W6A5), DAPF_METJA (Q58519), DAPF_METKA (Q8TY71), DAPF_METM5 (A4FXV0), DAPF_METM6 (A9AB27), DAPF_METM7 (A6VFK8), DAPF_METMP (Q6LYS1), DAPF_METNO (B8I9H6), DAPF_METPB (B1ZDT1), DAPF_METPP (A2SKV9), DAPF_METS4 (B0UCI8), DAPF_METSB (B8EM14), DAPF_METTH (O27389), DAPF_MICAN (B0JJ58), DAPF_MOOTA (Q2RK34), DAPF_MYCA1 (A0QIQ8), DAPF_MYCA9 (B1MD00), DAPF_MYCBO (P63898), DAPF_MYCBP (A1KM64), DAPF_MYCBT (C1AFI5), DAPF_MYCGI (A4TCN3), DAPF_MYCLB (B8ZQU1), DAPF_MYCLE (P46814), DAPF_MYCMM (B2HL16), DAPF_MYCPA (Q73W21), DAPF_MYCS2 (A0QVY0), DAPF_MYCSJ (A3PYF9), DAPF_MYCSK (A1UEZ9), DAPF_MYCTA (A5U678), DAPF_MYCTO (P9WP18), DAPF_MYCTU (P9WP19), DAPF_MYCUA (A0PT80), DAPF_MYCVP (A1T7U8), DAPF_NATTJ (B2A663), DAPF_NEIMA (Q9JV69), DAPF_NEIMB (Q9K060), DAPF_NITEC (Q0AIP0), DAPF_NITEU (Q82U84), DAPF_NITHX (Q1QHJ3), DAPF_NITMU (Q2Y5Z0), DAPF_NITOC (Q3JEA2), DAPF_NITSB (A6Q160), DAPF_NOSP7 (B2J3A7), DAPF_OCEIH (Q8ENX2), DAPF_ORYSI (A2ZLS4), DAPF_ORYSJ (Q2QNF7), DAPF_PARC0 (A1TKA9), DAPF_PARD8 (A6L8U3), DAPF_PARP8 (B2JJY4), DAPF_PARPJ (B2T1P5), DAPF_PARXL (Q146W2), DAPF_PASMU (P57962), DAPF_PECAS (Q6CZG8), DAPF_PECCP (C6DHB7), DAPF_PELTS (A5D193), DAPF_PELUB (Q4FP10), DAPF_PHEZH (B4RCE2), DAPF_PHOLL (Q7MYN5), DAPF_PHOPR (Q6LLN5), DAPF_PHOV8 (A6L7E5), DAPF_PICP2 (B1XP39), DAPF_PROM1 (A2C243), DAPF_PROMH (B4F1X7), DAPF_PROMM (Q7V7M5), DAPF_PROMT (Q46L14), DAPF_PSE14 (Q48C02), DAPF_PSEA6 (Q15NG5), DAPF_PSEA7 (A6VE52), DAPF_PSEA8 (B7V5G9), DAPF_PSEAB (Q02E84), DAPF_PSEAE (Q51564), DAPF_PSEE4 (Q1I303), DAPF_PSEFL (O05322), DAPF_PSEMY (A4XNX4), DAPF_PSEPF (Q3K4R8), DAPF_PSEPG (B0KQ41), DAPF_PSEPK (Q88CF3), DAPF_PSEPW (B1J1W0), DAPF_PSESM (Q88B09), DAPF_PSET1 (Q3IEW3), DAPF_PSEU2 (Q500B6), DAPF_PSYA2 (Q4FV85), DAPF_PSYCK (Q1QE99), DAPF_PSYIN (A1SQZ9), DAPF_PSYWF (A5WCB3), DAPF_RALN1 (Q8Y344), DAPF_RALPJ (B2UD25), DAPF_RHIEC (Q2K386), DAPF_RHILO (Q98EB6), DAPF_RHILW (B5ZTH4), DAPF_RHIME (Q92L46), DAPF_RHIR8 (B9JCL3), DAPF_RHIWR (A5VAG4), DAPF_RHOCS (B6IP82), DAPF_RHOE4 (C0ZYN8), DAPF_RHOJR (Q0S1N7), DAPF_RHOOB (C1B393), DAPF_RHOP2 (Q2J390), DAPF_RHOP5 (Q07UV4), DAPF_RHOPA (Q6ND59), DAPF_RHOPB (Q21CU6), DAPF_RHOPS (Q13DT7), DAPF_RHOPT (B3Q862), DAPF_RICAE (C3PNE1), DAPF_RICAH (A8GND7), DAPF_RICB8 (A8GWH4), DAPF_RICBR (Q1RIT1), DAPF_RICCK (A8EZ08), DAPF_RICCN (Q92I41), DAPF_RICFE (Q4ULS7), DAPF_RICM5 (A8F1I9), DAPF_RICPR (Q9ZDB7), DAPF_RICPU (C4K2A3), DAPF_RICRO (B0BXH3), DAPF_RICRS (A8GS10), DAPF_RICTY (Q68WW4), DAPF_RIPO1 (B7K1E7), DAPF_SACD2 (Q21P78), DAPF_SALA4 (B5EZS3), DAPF_SALDC (B5FNU5), DAPF_SALHS (B4TB37), DAPF_SALNS (B4SZ51), DAPF_SALPA (Q5PKM6), DAPF_SALPB (A9MY70), DAPF_SALPK (B5BIV6), DAPF_SALSV (B4TNV9), DAPF_SALTI (P0A1F3), DAPF_SALTY (P0A1F2), DAPF_SERP5 (A8G852), DAPF_SHEAM (A1SAP5), DAPF_SHEB2 (B8E690), DAPF_SHEB5 (A3D9Q0), DAPF_SHEB8 (A6WTF5), DAPF_SHEB9 (A9L5F5), DAPF_SHEDO (Q12S90), DAPF_SHEFN (Q088K8), DAPF_SHELP (A3Q9P7), DAPF_SHEON (Q8E9H5), DAPF_SHEPC (A4YBF7), DAPF_SHESA (A0KS65), DAPF_SHESH (A8G0W0), DAPF_SHESM (Q0HN95), DAPF_SHESR (Q0HQJ2), DAPF_SHESW (A1RPD2), DAPF_SHEWM (B1KQD0), DAPF_SHIB3 (B2TUW5), DAPF_SHIF8 (Q0SZ00), DAPF_SODGM (Q2NQF4), DAPF_SPHAL (Q1GPI7), DAPF_STRCO (O69969), DAPF_STUS1 (A4VGW5), DAPF_SYNE7 (Q31LW2), DAPF_SYNJA (Q2JUV6), DAPF_SYNJB (Q2JLR0), DAPF_SYNP6 (Q5N013), DAPF_SYNY3 (P74667), DAPF_TERTT (C5BUL6), DAPF_THEFY (Q47RR3), DAPF_THEMA (Q9X1L0), DAPF_THEVB (Q8DGM2), DAPF_THISH (B8GT89), DAPF_TOLAT (C4LDU8), DAPF_TRIEI (Q116P1), DAPF_VARPS (C5CND4), DAPF_VESOH (A5CWN5), DAPF_VIBA3 (B7VMD4), DAPF_VIBC1 (A7N0W0), DAPF_VIBC3 (A5F4I6), DAPF_VIBCH (Q9KVL6), DAPF_VIBPA (Q87KJ4), DAPF_VIBVU (Q8DD81), DAPF_VIBVY (Q7MQC1), DAPF_WIGBR (Q8D2T4), DAPF_WOLTR (Q5GSB8), DAPF_WOLWR (C0R4N2), DAPF_XANAC (Q8PPQ1), DAPF_XANC8 (Q4UYY2), DAPF_XANCB (B0RNK1), DAPF_XANCP (Q8P548), DAPF_XANE5 (Q3BXU3), DAPF_XANOM (Q2NYV5), DAPF_XYLF2 (B2IA16), DAPF_XYLFA (Q9PD98), DAPF_XYLFM (B0U6U5), DAPF_XYLFT (Q87DI4), DAPF_YERE8 (A1JI90), DAPF_YERP3 (A7FD74), DAPF_YERPA (Q1CBM6), DAPF_YERPB (B2K072), DAPF_YERPE (P46357), DAPF_YERPG (A9R8K5), DAPF_YERPN (Q1CNH8), DAPF_YERPP (A4TRA3), DAPF_YERPS (Q66FZ5), DAPF_YERPY (B1JPE1), DAPF_ZYMMO (Q5NNL4)» more
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UniProtKB/Swiss-Prot False negative sequences |
10 sequences
DAPF2_NOSS1 (P54897), DAPF_ALBFT (Q21SV0), DAPF_GEMAT (C1A8U3), DAPF_LEGPA (Q5X822), DAPF_LEGPC (A5IHM9), DAPF_LEGPH (Q5ZYK6), DAPF_LEGPL (Q5WZH5), DAPF_LEPCP (B1Y6S6), DAPF_METTP (A0B6C1), DAPF_RUTMC (A1AWJ5)» more |
PDB [Detailed view] |
22 PDB
1BWZ; 1GQZ; 2GKE; 2GKJ; 2OTN; 2Q9J; 3EJX; 3EKM; 3FVE; 4IJZ; 4IK0; 5H2G; 5H2Y; 5HA4; 5M47; 5YGU; 6D13; 6D1Q; 6D1V; 6VCK; 6VCL; 6VCM » more |