Entry: PS01326

Forthcoming changes to the profile format
General information about the entry

Entry name [info] DAP_EPIMERASE
Accession [info] PS01326
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); APR-2006 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC01029
Associated ProRule [info] PRU10125

Name and characterization of the entry

Description [info] Diaminopimelate epimerase signature.
Pattern [info]
N-x-[DN]-[GS]-[SENGFT]-x(4)-C-[GI]-N-[GA]-x-R.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 412 in 412 different sequences
Number of true positive hits 412 in 412 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.63 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 7
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
412 sequences

DAPF2_NOSS1 (Q8YVD0), DAPF_ACAM1  (B0C312), DAPF_ACIAC  (A1TKA9), 
DAPF_ACIAD  (Q6F950), DAPF_ACIB3  (B7GY71), DAPF_ACIB5  (B7I5Y5), 
DAPF_ACIBC  (B2HX82), DAPF_ACIBS  (B0VT30), DAPF_ACIBT  (A3M804), 
DAPF_ACIBY  (B0VDN4), DAPF_ACIC1  (A0LUZ5), DAPF_ACICJ  (A5G1F7), 
DAPF_ACIET  (B9MFT0), DAPF_ACTP2  (A3N2H9), DAPF_ACTP7  (B3GYL3), 
DAPF_ACTPJ  (B0BRC5), DAPF_ACTSZ  (A6VQR8), DAPF_AERHH  (A0KFI1), 
DAPF_AERS4  (A4SRW9), DAPF_AGRRK  (B9JCL3), DAPF_AGRT5  (Q8UC03), 
DAPF_AGRVS  (B9JUB9), DAPF_ALCBS  (Q0VM18), DAPF_ALISL  (B6EP85), 
DAPF_ALKEH  (Q0ACL9), DAPF_ALKMQ  (A6TRX5), DAPF_ALKOO  (A8MH77), 
DAPF_AQUAE  (O67693), DAPF_ARATH  (Q9LFG2), DAPF_ARCFU  (O29511), 
DAPF_AROAE  (Q5P2V2), DAPF_AZOPC  (B6YS11), DAPF_AZOSB  (A1K306), 
DAPF_AZOVD  (C1DJ56), DAPF_BACA2  (A7Z8D3), DAPF_BACAA  (C3PDH0), 
DAPF_BACAC  (C3LC72), DAPF_BACAH  (A0RKC7), DAPF_BACAN  (Q81XR2), 
DAPF_BACC0  (B7JDJ2), DAPF_BACC1  (Q72YE7), DAPF_BACC2  (B7IMV5), 
DAPF_BACC3  (C1EX98), DAPF_BACC4  (B7HBI0), DAPF_BACC7  (B7HUS8), 
DAPF_BACCN  (A7GUE1), DAPF_BACCR  (Q816D1), DAPF_BACCZ  (Q632C7), 
DAPF_BACFR  (Q64SY7), DAPF_BACHD  (Q9K7F0), DAPF_BACHK  (Q6HBW8), 
DAPF_BACLD  (Q65FD6), DAPF_BACP2  (A8FH15), DAPF_BACSU  (O32114), 
DAPF_BACTN  (Q8AAB7), DAPF_BACV8  (A6L7E5), DAPF_BACWK  (A9VN01), 
DAPF_BARBK  (A1UQV5), DAPF_BARHE  (Q6G1L7), DAPF_BARQU  (Q6FYC7), 
DAPF_BART1  (A9IZW1), DAPF_BAUCH  (Q1LTX0), DAPF_BEII9  (B2IEM1), 
DAPF_BLOFL  (Q7VRM5), DAPF_BLOPB  (Q491Z7), DAPF_BRADU  (Q89X45), 
DAPF_BRAHW  (C0QZX1), DAPF_BRASB  (A5E915), DAPF_BRASO  (A4YKA5), 
DAPF_BRUA1  (B2S885), DAPF_BRUA2  (Q2YLR4), DAPF_BRUAB  (Q57AW6), 
DAPF_BRUC2  (A9M8R8), DAPF_BRUMB  (C0RFH7), DAPF_BRUME  (Q8YJF0), 
DAPF_BRUO2  (A5VSQ7), DAPF_BRUSI  (B0CIT6), DAPF_BRUSU  (Q8FYF0), 
DAPF_BUCA5  (B8D8F1), DAPF_BUCAI  (P57649), DAPF_BUCAP  (Q8K901), 
DAPF_BUCAT  (B8D8A8), DAPF_BUCBP  (P59582), DAPF_BURCM  (Q0BAY6), 
DAPF_BURM7  (A3MRQ6), DAPF_BURM9  (A2S862), DAPF_BURMA  (Q62EZ3), 
DAPF_BURMS  (A1V7L3), DAPF_BURP0  (A3NQ71), DAPF_BURP6  (A3N4H9), 
DAPF_BURP8  (B2JJY4), DAPF_BURPP  (B2T1P5), DAPF_BURPS  (Q63YH7), 
DAPF_BURTA  (Q2T269), DAPF_BURVG  (A4JIQ6), DAPF_BURXL  (Q146W2), 
DAPF_CAMJ8  (A8FNJ1), DAPF_CAMJD  (A7H5P5), DAPF_CAMJE  (Q9PMD8), 
DAPF_CAMJJ  (A1W1D0), DAPF_CAMJR  (Q5HSQ5), DAPF_CAMLR  (B9KED6), 
DAPF_CARHZ  (Q3AC09), DAPF_CAUCN  (B8GVW2), DAPF_CAUCR  (Q9A280), 
DAPF_CAUSK  (B0T542), DAPF_CELJU  (B3PEI8), DAPF_CHESB  (Q11CW3), 
DAPF_CHLMU  (Q9PJW2), DAPF_CHLPN  (Q9Z833), DAPF_CHLT2  (B0B802), 
DAPF_CHLTA  (Q3KLS0), DAPF_CHLTB  (B0BC67), DAPF_CHLTE  (Q8KAX9), 
DAPF_CHLTR  (O84437), DAPF_CHRSD  (Q1QSV1), DAPF_CHRVO  (Q7NV18), 
DAPF_CLAM3  (A5CSL3), DAPF_CLAMS  (B0RHB0), DAPF_CLOAB  (Q97FV2), 
DAPF_CLOPE  (Q46185), DAPF_CLOTH  (A3DK16), DAPF_COLP3  (Q48AR8), 
DAPF_CORA7  (C3PGX6), DAPF_COREF  (Q8FPE1), DAPF_CORGB  (A4QEV1), 
DAPF_CORGL  (Q8NP73), DAPF_COXB1  (B6J630), DAPF_COXB2  (B6J395), 
DAPF_COXBN  (A9KGY8), DAPF_COXBR  (A9N9J6), DAPF_COXBU  (Q83AD4), 
DAPF_CROS8  (A7MQK2), DAPF_CUPNH  (Q0KF42), DAPF_CUPPJ  (Q476V3), 
DAPF_CUPTR  (B2AGE5), DAPF_CYAP4  (B8HU20), DAPF_CYAP7  (B7KH06), 
DAPF_CYAP8  (B7K1E7), DAPF_DECAR  (Q47JN0), DAPF_DESAH  (C0QAP3), 
DAPF_DESAP  (B1I545), DAPF_DESDA  (B8IZX7), DAPF_DESHD  (B8FSD4), 
DAPF_DESRM  (A4J568), DAPF_ECO24  (A7ZU14), DAPF_ECO27  (B7UNC6), 
DAPF_ECO45  (B7MH73), DAPF_ECO55  (B7L969), DAPF_ECO57  (P0A6K2), 
DAPF_ECO5E  (B5YY56), DAPF_ECO7I  (B7NTD3), DAPF_ECO81  (B7MR29), 
DAPF_ECO8A  (B7M611), DAPF_ECOBW  (C4ZZ73), DAPF_ECODH  (B1XAH6), 
DAPF_ECOHS  (A8A6R7), DAPF_ECOL5  (Q0TAR6), DAPF_ECOL6  (Q8FBN6), 
DAPF_ECOLC  (B1IW95), DAPF_ECOLI  (P0A6K1), DAPF_ECOLU  (B7NFB1), 
DAPF_ECOSM  (B1LLY0), DAPF_EDWI9  (C5BBD4), DAPF_ELUMP  (B2KDH2), 
DAPF_ENT38  (A4WG08), DAPF_ENTFA  (Q838I3), DAPF_ERWT9  (B2VI49), 
DAPF_ERYLH  (Q2NBR6), DAPF_ESCF3  (B7LU47), DAPF_EUBR3  (C4Z900), 
DAPF_FLAPJ  (A6GYX5), DAPF_GEOKA  (Q5KVP4), DAPF_GEOSW  (C5D729), 
DAPF_GEOTN  (A4ISE8), DAPF_GLUOX  (Q5FQZ4), DAPF_GRABC  (Q0BS04), 
DAPF_HAEDU  (Q7VPN0), DAPF_HAEI8  (Q4QME8), DAPF_HAEIE  (A5UDX5), 
DAPF_HAEIG  (A5UHQ4), DAPF_HAEIN  (P44859), DAPF_HAEPS  (B8F878), 
DAPF_HAHCH  (Q2SQ64), DAPF_HALHL  (A1WWB3), DAPF_HALOH  (B8CX90), 
DAPF_HELMI  (B0TGR9), DAPF_HELP2  (B6JLE8), DAPF_HELPG  (B5Z6T7), 
DAPF_HELPH  (Q1CTW0), DAPF_HELPJ  (Q9ZLR5), DAPF_HELPS  (B2UTR2), 
DAPF_HELPY  (O25290), DAPF_HERAR  (A4G980), DAPF_HISS1  (Q0I572), 
DAPF_HISS2  (B0UWU6), DAPF_HYDS0  (B4U9P0), DAPF_IDILO  (Q5QUS6), 
DAPF_LACPL  (Q88V90), DAPF_LACS1  (Q1WTU5), DAPF_LARHH  (C1D8Q0), 
DAPF_LEIXX  (Q6AE05), DAPF_LEPBA  (B0SC36), DAPF_LEPBJ  (Q04W97), 
DAPF_LEPBL  (Q04X60), DAPF_LEPIC  (Q72W63), DAPF_LEPIN  (Q8F9V5), 
DAPF_LISIN  (Q929Z7), DAPF_LISMC  (C1KWW2), DAPF_LISMF  (Q71Y02), 
DAPF_LISMH  (B8DBR3), DAPF_LISMO  (Q8Y5N9), DAPF_LISW6  (A0AKC4), 
DAPF_MAGSM  (A0LE31), DAPF_MANSM  (Q65RL9), DAPF_META3  (A6UTH4), 
DAPF_METC4  (B7KQM2), DAPF_METEP  (A9W6A5), DAPF_METJA  (Q58519), 
DAPF_METKA  (Q8TY71), DAPF_METM5  (A4FXV0), DAPF_METM6  (A9AB27), 
DAPF_METM7  (A6VFK8), DAPF_METMP  (Q6LYS1), DAPF_METNO  (B8I9H6), 
DAPF_METPB  (B1ZDT1), DAPF_METPP  (A2SKV9), DAPF_METS4  (B0UCI8), 
DAPF_METSB  (B8EM14), DAPF_METTH  (O27389), DAPF_MICAN  (B0JJ58), 
DAPF_MOOTA  (Q2RK34), DAPF_MYCA1  (A0QIQ8), DAPF_MYCA9  (B1MD00), 
DAPF_MYCBO  (P63898), DAPF_MYCBP  (A1KM64), DAPF_MYCBT  (C1AFI5), 
DAPF_MYCGI  (A4TCN3), DAPF_MYCLB  (B8ZQU1), DAPF_MYCLE  (P46814), 
DAPF_MYCMM  (B2HL16), DAPF_MYCPA  (Q73W21), DAPF_MYCS2  (A0QVY0), 
DAPF_MYCSJ  (A3PYF9), DAPF_MYCSK  (A1UEZ9), DAPF_MYCTA  (A5U678), 
DAPF_MYCTO  (P9WP18), DAPF_MYCTU  (P9WP19), DAPF_MYCUA  (A0PT80), 
DAPF_MYCVP  (A1T7U8), DAPF_NATTJ  (B2A663), DAPF_NEIMA  (Q9JV69), 
DAPF_NEIMB  (Q9K060), DAPF_NITEC  (Q0AIP0), DAPF_NITEU  (Q82U84), 
DAPF_NITHX  (Q1QHJ3), DAPF_NITMU  (Q2Y5Z0), DAPF_NITOC  (Q3JEA2), 
DAPF_NITSB  (A6Q160), DAPF_NOSP7  (B2J3A7), DAPF_OCEIH  (Q8ENX2), 
DAPF_OCHA4  (A6WXE4), DAPF_OLICO  (B6JAP3), DAPF_ORYSI  (A2ZLS4), 
DAPF_ORYSJ  (Q2QNF7), DAPF_PARD8  (A6L8U3), DAPF_PASMU  (P57962), 
DAPF_PECAS  (Q6CZG8), DAPF_PECCP  (C6DHB7), DAPF_PELTS  (A5D193), 
DAPF_PELUB  (Q4FP10), DAPF_PHEZH  (B4RCE2), DAPF_PHOLL  (Q7MYN5), 
DAPF_PHOPR  (Q6LLN5), DAPF_PROM1  (A2C243), DAPF_PROMH  (B4F1X7), 
DAPF_PROMM  (Q7V7M5), DAPF_PROMT  (Q46L14), DAPF_PSE14  (Q48C02), 
DAPF_PSEA6  (Q15NG5), DAPF_PSEA7  (A6VE52), DAPF_PSEA8  (B7V5G9), 
DAPF_PSEAB  (Q02E84), DAPF_PSEAE  (Q51564), DAPF_PSEE4  (Q1I303), 
DAPF_PSEFL  (O05322), DAPF_PSEHT  (Q3IEW3), DAPF_PSEMY  (A4XNX4), 
DAPF_PSEPF  (Q3K4R8), DAPF_PSEPG  (B0KQ41), DAPF_PSEPK  (Q88CF3), 
DAPF_PSEPW  (B1J1W0), DAPF_PSESM  (Q88B09), DAPF_PSEU2  (Q500B6), 
DAPF_PSEU5  (A4VGW5), DAPF_PSYA2  (Q4FV85), DAPF_PSYCK  (Q1QE99), 
DAPF_PSYIN  (A1SQZ9), DAPF_PSYWF  (A5WCB3), DAPF_RALME  (Q1LS37), 
DAPF_RALPJ  (B2UD25), DAPF_RALSO  (Q8Y344), DAPF_RHIEC  (Q2K386), 
DAPF_RHILO  (Q98EB6), DAPF_RHILW  (B5ZTH4), DAPF_RHIME  (Q92L46), 
DAPF_RHOCS  (B6IP82), DAPF_RHOE4  (C0ZYN8), DAPF_RHOOB  (C1B393), 
DAPF_RHOP2  (Q2J390), DAPF_RHOP5  (Q07UV4), DAPF_RHOPA  (Q6ND59), 
DAPF_RHOPB  (Q21CU6), DAPF_RHOPS  (Q13DT7), DAPF_RHOPT  (B3Q862), 
DAPF_RHOS4  (Q3IZB6), DAPF_RHOSR  (Q0S1N7), DAPF_RICAE  (C3PNE1), 
DAPF_RICAH  (A8GND7), DAPF_RICB8  (A8GWH4), DAPF_RICBR  (Q1RIT1), 
DAPF_RICCK  (A8EZ08), DAPF_RICCN  (Q92I41), DAPF_RICFE  (Q4ULS7), 
DAPF_RICM5  (A8F1I9), DAPF_RICPR  (Q9ZDB7), DAPF_RICPU  (C4K2A3), 
DAPF_RICRO  (B0BXH3), DAPF_RICRS  (A8GS10), DAPF_RICTY  (Q68WW4), 
DAPF_SACD2  (Q21P78), DAPF_SALA4  (B5EZS3), DAPF_SALDC  (B5FNU5), 
DAPF_SALHS  (B4TB37), DAPF_SALNS  (B4SZ51), DAPF_SALPA  (Q5PKM6), 
DAPF_SALPB  (A9MY70), DAPF_SALPK  (B5BIV6), DAPF_SALSV  (B4TNV9), 
DAPF_SALTI  (P0A1F3), DAPF_SALTY  (P0A1F2), DAPF_SERP5  (A8G852), 
DAPF_SHEAM  (A1SAP5), DAPF_SHEB2  (B8E690), DAPF_SHEB5  (A3D9Q0), 
DAPF_SHEB8  (A6WTF5), DAPF_SHEB9  (A9L5F5), DAPF_SHEDO  (Q12S90), 
DAPF_SHEFN  (Q088K8), DAPF_SHELP  (A3Q9P7), DAPF_SHEON  (Q8E9H5), 
DAPF_SHEPC  (A4YBF7), DAPF_SHESA  (A0KS65), DAPF_SHESH  (A8G0W0), 
DAPF_SHESM  (Q0HN95), DAPF_SHESR  (Q0HQJ2), DAPF_SHESW  (A1RPD2), 
DAPF_SHEWM  (B1KQD0), DAPF_SHIB3  (B2TUW5), DAPF_SHIF8  (Q0SZ00), 
DAPF_SODGM  (Q2NQF4), DAPF_SPHAL  (Q1GPI7), DAPF_SPHWW  (A5VAG4), 
DAPF_STRCO  (O69969), DAPF_SYNE7  (Q31LW2), DAPF_SYNJA  (Q2JUV6), 
DAPF_SYNJB  (Q2JLR0), DAPF_SYNP2  (B1XP39), DAPF_SYNP6  (Q5N013), 
DAPF_SYNY3  (P74667), DAPF_TERTT  (C5BUL6), DAPF_THEEB  (Q8DGM2), 
DAPF_THEFY  (Q47RR3), DAPF_THETN  (Q8R9S4), DAPF_THISH  (B8GT89), 
DAPF_TOLAT  (C4LDU8), DAPF_TRIEI  (Q116P1), DAPF_UNCMA  (Q0W3B6), 
DAPF_VARPS  (C5CND4), DAPF_VESOH  (A5CWN5), DAPF_VIBC3  (A5F4I6), 
DAPF_VIBCB  (A7N0W0), DAPF_VIBCH  (Q9KVL6), DAPF_VIBF1  (Q5E1W7), 
DAPF_VIBPA  (Q87KJ4), DAPF_VIBSL  (B7VMD4), DAPF_VIBVU  (Q8DD81), 
DAPF_VIBVY  (Q7MQC1), DAPF_WIGBR  (Q8D2T4), DAPF_WOLTR  (Q5GSB8), 
DAPF_WOLWR  (C0R4N2), DAPF_XANAC  (Q8PPQ1), DAPF_XANC5  (Q3BXU3), 
DAPF_XANC8  (Q4UYY2), DAPF_XANCB  (B0RNK1), DAPF_XANCP  (Q8P548), 
DAPF_XANOM  (Q2NYV5), DAPF_XYLF2  (B2IA16), DAPF_XYLFA  (Q9PD98), 
DAPF_XYLFM  (B0U6U5), DAPF_XYLFT  (Q87DI4), DAPF_YERE8  (A1JI90), 
DAPF_YERP3  (A7FD74), DAPF_YERPA  (Q1CBM6), DAPF_YERPB  (B2K072), 
DAPF_YERPE  (P46357), DAPF_YERPG  (A9R8K5), DAPF_YERPN  (Q1CNH8), 
DAPF_YERPP  (A4TRA3), DAPF_YERPS  (Q66FZ5), DAPF_YERPY  (B1JPE1), 
DAPF_ZYMMO  (Q5NNL4)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

DAPF1_NOSS1 (P54897), DAPF_ALBFT  (Q21SV0), DAPF_GEMAT  (C1A8U3), 
DAPF_LEGPA  (Q5X822), DAPF_LEGPC  (A5IHM9), DAPF_LEGPH  (Q5ZYK6), 
DAPF_LEGPL  (Q5WZH5), DAPF_LEPCP  (B1Y6S6), DAPF_METTP  (A0B6C1), 
DAPF_RUTMC  (A1AWJ5)
» More

PDB
[Detailed view]
10 PDB

1BWZ; 1GQZ; 2GKE; 2GKJ; 2OTN; 3EJX; 3EKM; 3FVE; 4IJZ; 4IK0

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission