Due to maintenance work, this service will not be available Thursday August 21st between 7am and 8am CEST.
Entry: PS01326

Forthcoming changes to the profile format
General information about the entry

Entry name [info] DAP_EPIMERASE
Accession [info] PS01326
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC01029
Associated ProRule [info] PRU10125

Name and characterization of the entry

Description [info] Diaminopimelate epimerase signature.
Pattern [info]
N-x-[DN]-[GS]-[SENGFT]-x(4)-C-[GI]-N-[GA]-x-R.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 412 in 412 different sequences
Number of true positive hits 412 in 412 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.63 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 7
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
412 sequences

DAPF2_NOSS1 (Q8YVD0), DAPF_ACAM1  (B0C312), DAPF_ACIAC  (A1TKA9), 
DAPF_ACIAD  (Q6F950), DAPF_ACIB3  (B7GY71), DAPF_ACIB5  (B7I5Y5), 
DAPF_ACIBC  (B2HX82), DAPF_ACIBS  (B0VT30), DAPF_ACIBT  (A3M804), 
DAPF_ACIBY  (B0VDN4), DAPF_ACIC1  (A0LUZ5), DAPF_ACICJ  (A5G1F7), 
DAPF_ACIET  (B9MFT0), DAPF_ACTP2  (A3N2H9), DAPF_ACTP7  (B3GYL3), 
DAPF_ACTPJ  (B0BRC5), DAPF_ACTSZ  (A6VQR8), DAPF_AERHH  (A0KFI1), 
DAPF_AERS4  (A4SRW9), DAPF_AGRRK  (B9JCL3), DAPF_AGRT5  (Q8UC03), 
DAPF_AGRVS  (B9JUB9), DAPF_ALCBS  (Q0VM18), DAPF_ALISL  (B6EP85), 
DAPF_ALKEH  (Q0ACL9), DAPF_ALKMQ  (A6TRX5), DAPF_ALKOO  (A8MH77), 
DAPF_AQUAE  (O67693), DAPF_ARATH  (Q9LFG2), DAPF_ARCFU  (O29511), 
DAPF_AROAE  (Q5P2V2), DAPF_AZOPC  (B6YS11), DAPF_AZOSB  (A1K306), 
DAPF_AZOVD  (C1DJ56), DAPF_BACA2  (A7Z8D3), DAPF_BACAA  (C3PDH0), 
DAPF_BACAC  (C3LC72), DAPF_BACAH  (A0RKC7), DAPF_BACAN  (Q81XR2), 
DAPF_BACC0  (B7JDJ2), DAPF_BACC1  (Q72YE7), DAPF_BACC2  (B7IMV5), 
DAPF_BACC3  (C1EX98), DAPF_BACC4  (B7HBI0), DAPF_BACC7  (B7HUS8), 
DAPF_BACCN  (A7GUE1), DAPF_BACCR  (Q816D1), DAPF_BACCZ  (Q632C7), 
DAPF_BACFR  (Q64SY7), DAPF_BACHD  (Q9K7F0), DAPF_BACHK  (Q6HBW8), 
DAPF_BACLD  (Q65FD6), DAPF_BACP2  (A8FH15), DAPF_BACSU  (O32114), 
DAPF_BACTN  (Q8AAB7), DAPF_BACV8  (A6L7E5), DAPF_BACWK  (A9VN01), 
DAPF_BARBK  (A1UQV5), DAPF_BARHE  (Q6G1L7), DAPF_BARQU  (Q6FYC7), 
DAPF_BART1  (A9IZW1), DAPF_BAUCH  (Q1LTX0), DAPF_BEII9  (B2IEM1), 
DAPF_BLOFL  (Q7VRM5), DAPF_BLOPB  (Q491Z7), DAPF_BRADU  (Q89X45), 
DAPF_BRAHW  (C0QZX1), DAPF_BRASB  (A5E915), DAPF_BRASO  (A4YKA5), 
DAPF_BRUA1  (B2S885), DAPF_BRUA2  (Q2YLR4), DAPF_BRUAB  (Q57AW6), 
DAPF_BRUC2  (A9M8R8), DAPF_BRUMB  (C0RFH7), DAPF_BRUME  (Q8YJF0), 
DAPF_BRUO2  (A5VSQ7), DAPF_BRUSI  (B0CIT6), DAPF_BRUSU  (Q8FYF0), 
DAPF_BUCA5  (B8D8F1), DAPF_BUCAI  (P57649), DAPF_BUCAP  (Q8K901), 
DAPF_BUCAT  (B8D8A8), DAPF_BUCBP  (P59582), DAPF_BURCM  (Q0BAY6), 
DAPF_BURM7  (A3MRQ6), DAPF_BURM9  (A2S862), DAPF_BURMA  (Q62EZ3), 
DAPF_BURMS  (A1V7L3), DAPF_BURP0  (A3NQ71), DAPF_BURP6  (A3N4H9), 
DAPF_BURP8  (B2JJY4), DAPF_BURPP  (B2T1P5), DAPF_BURPS  (Q63YH7), 
DAPF_BURTA  (Q2T269), DAPF_BURVG  (A4JIQ6), DAPF_BURXL  (Q146W2), 
DAPF_CAMJ8  (A8FNJ1), DAPF_CAMJD  (A7H5P5), DAPF_CAMJE  (Q9PMD8), 
DAPF_CAMJJ  (A1W1D0), DAPF_CAMJR  (Q5HSQ5), DAPF_CAMLR  (B9KED6), 
DAPF_CARHZ  (Q3AC09), DAPF_CAUCN  (B8GVW2), DAPF_CAUCR  (Q9A280), 
DAPF_CAUSK  (B0T542), DAPF_CELJU  (B3PEI8), DAPF_CHESB  (Q11CW3), 
DAPF_CHLMU  (Q9PJW2), DAPF_CHLPN  (Q9Z833), DAPF_CHLT2  (B0B802), 
DAPF_CHLTA  (Q3KLS0), DAPF_CHLTB  (B0BC67), DAPF_CHLTE  (Q8KAX9), 
DAPF_CHLTR  (O84437), DAPF_CHRSD  (Q1QSV1), DAPF_CHRVO  (Q7NV18), 
DAPF_CLAM3  (A5CSL3), DAPF_CLAMS  (B0RHB0), DAPF_CLOAB  (Q97FV2), 
DAPF_CLOPE  (Q46185), DAPF_CLOTH  (A3DK16), DAPF_COLP3  (Q48AR8), 
DAPF_CORA7  (C3PGX6), DAPF_COREF  (Q8FPE1), DAPF_CORGB  (A4QEV1), 
DAPF_CORGL  (Q8NP73), DAPF_COXB1  (B6J630), DAPF_COXB2  (B6J395), 
DAPF_COXBN  (A9KGY8), DAPF_COXBR  (A9N9J6), DAPF_COXBU  (Q83AD4), 
DAPF_CROS8  (A7MQK2), DAPF_CUPNH  (Q0KF42), DAPF_CUPPJ  (Q476V3), 
DAPF_CUPTR  (B2AGE5), DAPF_CYAP4  (B8HU20), DAPF_CYAP7  (B7KH06), 
DAPF_CYAP8  (B7K1E7), DAPF_DECAR  (Q47JN0), DAPF_DESAH  (C0QAP3), 
DAPF_DESAP  (B1I545), DAPF_DESDA  (B8IZX7), DAPF_DESHD  (B8FSD4), 
DAPF_DESRM  (A4J568), DAPF_ECO24  (A7ZU14), DAPF_ECO27  (B7UNC6), 
DAPF_ECO45  (B7MH73), DAPF_ECO55  (B7L969), DAPF_ECO57  (P0A6K2), 
DAPF_ECO5E  (B5YY56), DAPF_ECO7I  (B7NTD3), DAPF_ECO81  (B7MR29), 
DAPF_ECO8A  (B7M611), DAPF_ECOBW  (C4ZZ73), DAPF_ECODH  (B1XAH6), 
DAPF_ECOHS  (A8A6R7), DAPF_ECOL5  (Q0TAR6), DAPF_ECOL6  (Q8FBN6), 
DAPF_ECOLC  (B1IW95), DAPF_ECOLI  (P0A6K1), DAPF_ECOLU  (B7NFB1), 
DAPF_ECOSM  (B1LLY0), DAPF_EDWI9  (C5BBD4), DAPF_ELUMP  (B2KDH2), 
DAPF_ENT38  (A4WG08), DAPF_ENTFA  (Q838I3), DAPF_ERWT9  (B2VI49), 
DAPF_ERYLH  (Q2NBR6), DAPF_ESCF3  (B7LU47), DAPF_EUBR3  (C4Z900), 
DAPF_FLAPJ  (A6GYX5), DAPF_GEOKA  (Q5KVP4), DAPF_GEOSW  (C5D729), 
DAPF_GEOTN  (A4ISE8), DAPF_GLUOX  (Q5FQZ4), DAPF_GRABC  (Q0BS04), 
DAPF_HAEDU  (Q7VPN0), DAPF_HAEI8  (Q4QME8), DAPF_HAEIE  (A5UDX5), 
DAPF_HAEIG  (A5UHQ4), DAPF_HAEIN  (P44859), DAPF_HAEPS  (B8F878), 
DAPF_HAHCH  (Q2SQ64), DAPF_HALHL  (A1WWB3), DAPF_HALOH  (B8CX90), 
DAPF_HELMI  (B0TGR9), DAPF_HELP2  (B6JLE8), DAPF_HELPG  (B5Z6T7), 
DAPF_HELPH  (Q1CTW0), DAPF_HELPJ  (Q9ZLR5), DAPF_HELPS  (B2UTR2), 
DAPF_HELPY  (O25290), DAPF_HERAR  (A4G980), DAPF_HISS1  (Q0I572), 
DAPF_HISS2  (B0UWU6), DAPF_HYDS0  (B4U9P0), DAPF_IDILO  (Q5QUS6), 
DAPF_LACPL  (Q88V90), DAPF_LACS1  (Q1WTU5), DAPF_LARHH  (C1D8Q0), 
DAPF_LEIXX  (Q6AE05), DAPF_LEPBA  (B0SC36), DAPF_LEPBJ  (Q04W97), 
DAPF_LEPBL  (Q04X60), DAPF_LEPIC  (Q72W63), DAPF_LEPIN  (Q8F9V5), 
DAPF_LISIN  (Q929Z7), DAPF_LISMC  (C1KWW2), DAPF_LISMF  (Q71Y02), 
DAPF_LISMH  (B8DBR3), DAPF_LISMO  (Q8Y5N9), DAPF_LISW6  (A0AKC4), 
DAPF_MAGSM  (A0LE31), DAPF_MANSM  (Q65RL9), DAPF_META3  (A6UTH4), 
DAPF_METC4  (B7KQM2), DAPF_METEP  (A9W6A5), DAPF_METJA  (Q58519), 
DAPF_METKA  (Q8TY71), DAPF_METM5  (A4FXV0), DAPF_METM6  (A9AB27), 
DAPF_METM7  (A6VFK8), DAPF_METMP  (Q6LYS1), DAPF_METNO  (B8I9H6), 
DAPF_METPB  (B1ZDT1), DAPF_METPP  (A2SKV9), DAPF_METS4  (B0UCI8), 
DAPF_METSB  (B8EM14), DAPF_METTH  (O27389), DAPF_MICAN  (B0JJ58), 
DAPF_MOOTA  (Q2RK34), DAPF_MYCA1  (A0QIQ8), DAPF_MYCA9  (B1MD00), 
DAPF_MYCBO  (P63898), DAPF_MYCBP  (A1KM64), DAPF_MYCBT  (C1AFI5), 
DAPF_MYCGI  (A4TCN3), DAPF_MYCLB  (B8ZQU1), DAPF_MYCLE  (P46814), 
DAPF_MYCMM  (B2HL16), DAPF_MYCPA  (Q73W21), DAPF_MYCS2  (A0QVY0), 
DAPF_MYCSJ  (A3PYF9), DAPF_MYCSK  (A1UEZ9), DAPF_MYCTA  (A5U678), 
DAPF_MYCTO  (P9WP18), DAPF_MYCTU  (P9WP19), DAPF_MYCUA  (A0PT80), 
DAPF_MYCVP  (A1T7U8), DAPF_NATTJ  (B2A663), DAPF_NEIMA  (Q9JV69), 
DAPF_NEIMB  (Q9K060), DAPF_NITEC  (Q0AIP0), DAPF_NITEU  (Q82U84), 
DAPF_NITHX  (Q1QHJ3), DAPF_NITMU  (Q2Y5Z0), DAPF_NITOC  (Q3JEA2), 
DAPF_NITSB  (A6Q160), DAPF_NOSP7  (B2J3A7), DAPF_OCEIH  (Q8ENX2), 
DAPF_OCHA4  (A6WXE4), DAPF_OLICO  (B6JAP3), DAPF_ORYSI  (A2ZLS4), 
DAPF_ORYSJ  (Q2QNF7), DAPF_PARD8  (A6L8U3), DAPF_PASMU  (P57962), 
DAPF_PECAS  (Q6CZG8), DAPF_PECCP  (C6DHB7), DAPF_PELTS  (A5D193), 
DAPF_PELUB  (Q4FP10), DAPF_PHEZH  (B4RCE2), DAPF_PHOLL  (Q7MYN5), 
DAPF_PHOPR  (Q6LLN5), DAPF_PROM1  (A2C243), DAPF_PROMH  (B4F1X7), 
DAPF_PROMM  (Q7V7M5), DAPF_PROMT  (Q46L14), DAPF_PSE14  (Q48C02), 
DAPF_PSEA6  (Q15NG5), DAPF_PSEA7  (A6VE52), DAPF_PSEA8  (B7V5G9), 
DAPF_PSEAB  (Q02E84), DAPF_PSEAE  (Q51564), DAPF_PSEE4  (Q1I303), 
DAPF_PSEFL  (O05322), DAPF_PSEHT  (Q3IEW3), DAPF_PSEMY  (A4XNX4), 
DAPF_PSEPF  (Q3K4R8), DAPF_PSEPG  (B0KQ41), DAPF_PSEPK  (Q88CF3), 
DAPF_PSEPW  (B1J1W0), DAPF_PSESM  (Q88B09), DAPF_PSEU2  (Q500B6), 
DAPF_PSEU5  (A4VGW5), DAPF_PSYA2  (Q4FV85), DAPF_PSYCK  (Q1QE99), 
DAPF_PSYIN  (A1SQZ9), DAPF_PSYWF  (A5WCB3), DAPF_RALME  (Q1LS37), 
DAPF_RALPJ  (B2UD25), DAPF_RALSO  (Q8Y344), DAPF_RHIEC  (Q2K386), 
DAPF_RHILO  (Q98EB6), DAPF_RHILW  (B5ZTH4), DAPF_RHIME  (Q92L46), 
DAPF_RHOCS  (B6IP82), DAPF_RHOE4  (C0ZYN8), DAPF_RHOOB  (C1B393), 
DAPF_RHOP2  (Q2J390), DAPF_RHOP5  (Q07UV4), DAPF_RHOPA  (Q6ND59), 
DAPF_RHOPB  (Q21CU6), DAPF_RHOPS  (Q13DT7), DAPF_RHOPT  (B3Q862), 
DAPF_RHOS4  (Q3IZB6), DAPF_RHOSR  (Q0S1N7), DAPF_RICAE  (C3PNE1), 
DAPF_RICAH  (A8GND7), DAPF_RICB8  (A8GWH4), DAPF_RICBR  (Q1RIT1), 
DAPF_RICCK  (A8EZ08), DAPF_RICCN  (Q92I41), DAPF_RICFE  (Q4ULS7), 
DAPF_RICM5  (A8F1I9), DAPF_RICPR  (Q9ZDB7), DAPF_RICPU  (C4K2A3), 
DAPF_RICRO  (B0BXH3), DAPF_RICRS  (A8GS10), DAPF_RICTY  (Q68WW4), 
DAPF_SACD2  (Q21P78), DAPF_SALA4  (B5EZS3), DAPF_SALDC  (B5FNU5), 
DAPF_SALHS  (B4TB37), DAPF_SALNS  (B4SZ51), DAPF_SALPA  (Q5PKM6), 
DAPF_SALPB  (A9MY70), DAPF_SALPK  (B5BIV6), DAPF_SALSV  (B4TNV9), 
DAPF_SALTI  (P0A1F3), DAPF_SALTY  (P0A1F2), DAPF_SERP5  (A8G852), 
DAPF_SHEAM  (A1SAP5), DAPF_SHEB2  (B8E690), DAPF_SHEB5  (A3D9Q0), 
DAPF_SHEB8  (A6WTF5), DAPF_SHEB9  (A9L5F5), DAPF_SHEDO  (Q12S90), 
DAPF_SHEFN  (Q088K8), DAPF_SHELP  (A3Q9P7), DAPF_SHEON  (Q8E9H5), 
DAPF_SHEPC  (A4YBF7), DAPF_SHESA  (A0KS65), DAPF_SHESH  (A8G0W0), 
DAPF_SHESM  (Q0HN95), DAPF_SHESR  (Q0HQJ2), DAPF_SHESW  (A1RPD2), 
DAPF_SHEWM  (B1KQD0), DAPF_SHIB3  (B2TUW5), DAPF_SHIF8  (Q0SZ00), 
DAPF_SODGM  (Q2NQF4), DAPF_SPHAL  (Q1GPI7), DAPF_SPHWW  (A5VAG4), 
DAPF_STRCO  (O69969), DAPF_SYNE7  (Q31LW2), DAPF_SYNJA  (Q2JUV6), 
DAPF_SYNJB  (Q2JLR0), DAPF_SYNP2  (B1XP39), DAPF_SYNP6  (Q5N013), 
DAPF_SYNY3  (P74667), DAPF_TERTT  (C5BUL6), DAPF_THEEB  (Q8DGM2), 
DAPF_THEFY  (Q47RR3), DAPF_THETN  (Q8R9S4), DAPF_THISH  (B8GT89), 
DAPF_TOLAT  (C4LDU8), DAPF_TRIEI  (Q116P1), DAPF_UNCMA  (Q0W3B6), 
DAPF_VARPS  (C5CND4), DAPF_VESOH  (A5CWN5), DAPF_VIBC3  (A5F4I6), 
DAPF_VIBCB  (A7N0W0), DAPF_VIBCH  (Q9KVL6), DAPF_VIBF1  (Q5E1W7), 
DAPF_VIBPA  (Q87KJ4), DAPF_VIBSL  (B7VMD4), DAPF_VIBVU  (Q8DD81), 
DAPF_VIBVY  (Q7MQC1), DAPF_WIGBR  (Q8D2T4), DAPF_WOLTR  (Q5GSB8), 
DAPF_WOLWR  (C0R4N2), DAPF_XANAC  (Q8PPQ1), DAPF_XANC5  (Q3BXU3), 
DAPF_XANC8  (Q4UYY2), DAPF_XANCB  (B0RNK1), DAPF_XANCP  (Q8P548), 
DAPF_XANOM  (Q2NYV5), DAPF_XYLF2  (B2IA16), DAPF_XYLFA  (Q9PD98), 
DAPF_XYLFM  (B0U6U5), DAPF_XYLFT  (Q87DI4), DAPF_YERE8  (A1JI90), 
DAPF_YERP3  (A7FD74), DAPF_YERPA  (Q1CBM6), DAPF_YERPB  (B2K072), 
DAPF_YERPE  (P46357), DAPF_YERPG  (A9R8K5), DAPF_YERPN  (Q1CNH8), 
DAPF_YERPP  (A4TRA3), DAPF_YERPS  (Q66FZ5), DAPF_YERPY  (B1JPE1), 
DAPF_ZYMMO  (Q5NNL4)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

DAPF1_NOSS1 (P54897), DAPF_ALBFT  (Q21SV0), DAPF_GEMAT  (C1A8U3), 
DAPF_LEGPA  (Q5X822), DAPF_LEGPC  (A5IHM9), DAPF_LEGPH  (Q5ZYK6), 
DAPF_LEGPL  (Q5WZH5), DAPF_LEPCP  (B1Y6S6), DAPF_METTP  (A0B6C1), 
DAPF_RUTMC  (A1AWJ5)
» More

PDB
[Detailed view]
10 PDB

1BWZ; 1GQZ; 2GKE; 2GKJ; 2OTN; 3EJX; 3EKM; 3FVE; 4IJZ; 4IK0

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission