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PROSITE entry PS01360


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General information about the entry

Entry name [info] ZF_MYND_1
Accession [info] PS01360
Entry type [info] PATTERN
Date [info] 01-JAN-2003 CREATED;
01-JAN-2003 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50865

Name and characterization of the entry

Description [info] Zinc finger MYND-type signature.
Pattern [info] 
[CH]-x(2,4)-C-x(7,17)-C-x(0,2)-C-x(4)-[YFT]-C-x(3)-[CH]-x(6,9)-H-
x(3,4)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 104 in 104 different sequences
Number of true positive hits 101 in 101 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 9
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.12 %
Recall (true positives / (true positives + false negatives)) 91.82 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 101 sequences 

ANKY1_HUMAN (Q9P2S6), ANKY2_BOVIN (Q0VCS9), ANKY2_CHICK (Q5ZMD2), 

ANKY2_HUMAN (Q8IV38), ANKY2_MOUSE (Q3TPE9), ANMY1_MOUSE (Q8C0W1), 
ASHR1_ARATH (Q7XJS0), DEAF1_DROME (Q24180), DEAF1_HUMAN (O75398), 
DEAF1_MOUSE (Q9Z1T5), DEAF1_PANTR (O77562), DEAF1_RAT   (O88450), 
EGL9_CAEEL  (G5EBV0), EGLN1_HUMAN (Q9GZT9), EGLN1_MOUSE (Q91YE3), 
FB342_ARATH (Q9FK27), FB76_ARATH  (Q9FYF9), GACZ_DICDI  (Q55DW9), 
MSS51_HUMAN (Q4VC12), MSS51_MOUSE (Q9D5Z5), MSS51_RAT   (D3ZKV9), 
MTG16_CHICK (Q5F3B1), MTG16_HUMAN (O75081), MTG16_MOUSE (O54972), 
MTG8R_HUMAN (O43439), MTG8R_MOUSE (O70374), MTG8R_XENLA (Q9IAB2), 
MTG8_HUMAN  (Q06455), MTG8_MOUSE  (Q61909), MUB1_ASPCL  (A1CBG9), 
MUB1_ASPFC  (B0Y1D1), MUB1_ASPFN  (B8NKS1), MUB1_ASPFU  (Q4WVI6), 
MUB1_ASPNC  (A2RA63), MUB1_ASPOR  (Q2U685), MUB1_ASPTN  (Q0CW83), 
MUB1_EMENI  (O42631), MUB1_NEOFI  (A1DDX0), MUB1_SCHPO  (P87311), 
MUB1_YEAST  (Q03162), PDCD2_BOVIN (Q2YDC9), PDCD2_HUMAN (Q16342), 
PDCD2_MOUSE (P46718), PDCD2_RAT   (P47816), SET14_CAEEL (Q09415), 
SET6_SCHPO  (O94256), SMY2A_DANRE (Q5BJI7), SMY2A_XENLA (Q7ZXV5), 
SMY2B_DANRE (Q5RGL7), SMY2B_XENLA (Q6GN68), SMYD1_HUMAN (Q8NB12), 
SMYD1_MOUSE (P97443), SMYD2_BOVIN (Q0P585), SMYD2_CHICK (E1C5V0), 
SMYD2_HUMAN (Q9NRG4), SMYD2_MOUSE (Q8R5A0), SMYD2_PIG   (C3RZA1), 
SMYD2_RAT   (Q7M6Z3), SMYD3_HUMAN (Q9H7B4), SMYD3_MOUSE (Q9CWR2), 
SMYD4_CHICK (Q5F3V0), SMYD4_DANRE (Q08C84), SMYD4_HUMAN (Q8IYR2), 
SMYD4_MOUSE (Q8BTK5), SMYD4_PONAB (Q5R5X9), SMYDL_CAEEL (Q8I4F7), 
TDRD1_DANRE (Q58EK5), TDRD1_HUMAN (Q9BXT4), TDRD1_MOUSE (Q99MV1), 
TDRD1_ORYLA (A9CPT4), UBP15_ARATH (Q9FPS9), UBP15_ORYSJ (Q0E2F9), 
UBP16_ARATH (Q9SB51), UBP17_ARATH (Q9FKP5), UBP18_ARATH (Q67XW5), 
UBP19_ARATH (Q9SJA1), UBP19_HUMAN (O94966), UBP19_MOUSE (Q3UJD6), 
UBP19_RAT   (Q6J1Y9), Y2140_DICDI (Q54DL6), Y2454_DICDI (Q54D67), 
Y3589_DICDI (Q557F7), Y3591_DICDI (Q557F6), Y4059_DICDI (Q54Q80), 
Y7331_DICDI (Q54ZX8), Y8495_DICDI (Q54IV4), YR331_MIMIV (Q5UQS2), 
ZMY10_DANRE (F1QN74), ZMY10_DROME (Q9VU41), ZMY10_HUMAN (O75800), 
ZMY10_MOUSE (Q99ML0), ZMY10_RAT   (Q6AXZ5), ZMY10_XENLA (Q5FWU8), 
ZMY11_HUMAN (Q15326), ZMY11_MOUSE (Q8R5C8), ZMY12_HUMAN (Q9H0C1), 
ZMY19_HUMAN (Q96E35), ZMY19_MOUSE (Q9CQG3), ZMY19_RAT   (Q7TSV3), 
ZMYD8_DROME (Q7KRS9), ZMYD8_HUMAN (Q9ULU4)
» more

UniProtKB/Swiss-Prot
False negative sequences		 9 sequences 

ATXR2_ARATH (Q5PP37), BIG_ARATH   (Q9SRU2), BIG_ORYSJ   (B9G2A8), 

SMYD5_CHICK (Q5ZIZ2), SMYD5_DANRE (F1RET2), SMYD5_HUMAN (Q6GMV2), 
SMYD5_MOUSE (Q3TYX3), SMYD5_XENLA (Q6GPQ4), ZMY15_HUMAN (Q9H091)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

SET5_CRYNB  (P0CR43), SET5_CRYNJ  (P0CR42), VE5_MMPV1   (P24834)


				
	

	

		PDB
[Detailed view]		
		
			69 PDB
			


			2D8Q; 2DAN; 2DJ8; 2JW6; 2OD1; 2ODD; 3MEK; 3N71; 3OXF; 3OXG; 3OXL; 3PDN; 
			
				3QWP; 3QWV; 3QWW; 3RIB; 3RU0; 3S7B; 3S7D; 3S7F; 3S7J; 3TG4; 3TG5; 4A24; 
				4O6F; 4WUY; 4YND; 5ARF; 5ARG; 5CCL; 5CCM; 5EX0; 5EX3; 5HDA; 5HI7; 5HQ8; 
				5KJK; 5KJL; 5KJM; 5KJN; 5MQ4; 5V37; 5V3H; 5WCG; 5XXD; 5XXG; 5XXJ; 5YJO; 
				6CBX; 6CBY; 6IJL; 6MON; 6N3G; 6O9O; 6P6G; 6P6K; 6P7Z; 6PAF; 6YUH; 6ZRB; 
				7BJ1; 7O2A; 7O2B; 7O2C; 7QLB; 7QNR; 7QNU; 8J07; 8OWO
			
			

			» more