Entry: PS50811

General information about the entry
Entry name WRKY
Accession number PS50811
Entry type MATRIX
Date MAY-2002 (CREATED); MAY-2002 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC50811
Associated ProRule PRU00223
Name and characterization of the entry
DescriptionWRKY domain profile.
Matrix / Profile 
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=66;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=61;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.2606; R2=0.01147738; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=717; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=543; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105;

                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='S'; M= 26, -4,-10, -8, -4,-20,  0,-14,-16,-10,-22,-16,  2,-10, -4,-14, 28, 12, -6,-32,-20, -4;
/M: SY='D'; M= 11, 14,-22, 20, 19,-29, -9, -8,-25, -1,-19,-19,  2, -7,  2,-11,  4, -6,-18,-29,-20, 11;
/M: SY='I'; M= -7,-14,-24,-13,  6,-12,-29,-18, 12,-11,  1,  1,-15,-15, -7,-15, -9, -7, 12,-27,-11, -2;
/M: SY='D'; M=  8, 26,-22, 34,  8,-32, -6, -8,-28, -4,-22,-22,  8,-10, -4,-14,  4, -6,-18,-32,-20,  2;
/M: SY='L'; M=-10,-30,-23,-33,-23,  7,-33,-23, 29,-30, 41, 20,-27,-27,-20,-23,-27,-10, 16,-20,  0,-23;
/M: SY='L'; M=-10, -2,-20,-10,-12, -2,-18, -8,  4,-18, 18,  4,  6,-26,-12,-12,-14, -6, -6,-28, -8,-12;
/M: SY='D'; M= -8, 30,-22, 42, 12,-32, -6, -4,-32, -4,-30,-26, 16,-10,  0,-10, 16,  2,-22,-40,-20,  6;
/M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10,  0,-40,  0,-30,-30, 20,-10,  0,-10,  0,-10,-30,-40,-20, 10;
/M: SY='G'; M=  0,-18,-22,-18,-24,-18, 30,-24,-12,-20,-14, -8,-12,-24,-24,-20, -4,-12,  2,-24,-22,-24;
/M: SY='W'; M=-20,-28,-38,-28,-24, 22,-26,  0, -8,-14, -8, -8,-28,-30,-14,-14,-28,-18,-18, 78, 60,-20;
/M: SY='R'; M=  8,-10,-22,-14, -4,-20,-12, -8,-22, 14,-16,-10, -4,-16,  2, 34, -2, -6,-12,-20,-14, -4;
/M: SY='W'; M=-20,-40,-50,-40,-30, 10,-20,-30,-20,-20,-20,-20,-40,-30,-20,-20,-40,-30,-30,150, 30,-20;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='K'; M=-10,  0,-30,  0, 10,-30,-20,-10,-30, 50,-30,-10,  0,-10, 10, 30,-10,-10,-20,-20,-10, 10;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='K'; M=-10,  0,-30,  0, 10,-30,-20,-10,-30, 50,-30,-10,  0,-10, 10, 30,-10,-10,-20,-20,-10, 10;
/M: SY='P'; M= -4,-26,-22,-22,-18,-12,-26,-26, 10,-16, -6, -2,-26, 18,-22,-20,-10, -4, 18,-30,-18,-22;
/M: SY='V'; M= -4,-30,-18,-34,-30,  0,-34,-30, 38,-24, 14, 14,-26,-26,-26,-24,-14, -4, 42,-26, -6,-30;
/M: SY='K'; M=-10,  0,-30,  0, 10,-30,-20,-10,-30, 50,-30,-10,  0,-10, 10, 30,-10,-10,-20,-20,-10, 10;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='N'; M= -2, 24,-16, 12,  0,-20,  0,  2,-20, -4,-30,-20, 40,-16,  0, -4, 22,  8,-22,-40,-20,  0;
/M: SY='P'; M=-10,-20,-40,-10,  0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10;
/M: SY='N'; M=-14, 16,-24,  4, -8,  0,-12, 14,-12, -4,-18,-12, 28,-24, -4, -4, -2, -4,-22,-12, 20, -8;
/M: SY='P'; M=-10,-20,-40,-10,  0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='G'; M=  6, -4,-18, -4, -8,-24, 28,-14,-28,-14,-30,-20,  6,-14, -8,-14, 24,  4,-18,-32,-24, -8;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='R'; M=-14, -4,-30, -4,  6,-26,-20, -6,-30, 42,-26,-10,  0,-14, 10, 46,-10,-10,-20,-20,-10,  6;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/I:         I=-6; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='T'; M=  0,  0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10,  0,-10,-10,-10, 20, 50,  0,-30,-10,-10;
/M: SY='S'; M= 10,  0,-10,  0,  0,-20,  0,-10,-20,-10,-30,-20, 10,-10,  0,-10, 40, 20,-10,-40,-20,  0;
/M: SY='K'; M=  7, -3,-24, -6,  7,-30,-14, -7,-21, 20,-21, -7, -3,-10, 20,  9, -1, -7,-17,-20,-13, 14;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='P'; M=-10, -7,-26, -9, -8,-11,-18,-11, -4,-15,  2, -4, -1, 10,-11,-14,-12, -7,-14,-29,-15,-11;
/M: SY='V'; M= 20,-22,-10,-26,-22, -8,-18,-26, 14,-16,  2,  2,-22,-22,-22,-20, -2,  0, 30,-26,-14,-22;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='K'; M=-10,  0,-30,  0, 10,-30,-20,-10,-30, 50,-30,-10,  0,-10, 10, 30,-10,-10,-20,-20,-10, 10;
/M: SY='H'; M=-16,  0,-30,  0,  8,-28,-20, 64,-26, -2,-20,  0,  6,-16, 30,  4, -6,-16,-30,-26,  8, 16;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20,  0,-30, 10,-20,-20,  0,  0, 20,  0,  0,-10,-30,-30,-20, 40;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='N'; M= 14, 13,-14,  2, -3,-20,  0, -5,-17, -6,-24,-17, 24,-14, -3, -9, 19,  6,-15,-34,-20, -3;
/M: SY='R'; M= -2, -4,-18, -4,  0,-20, -8, -6,-24,  6,-26,-16,  6,-14,  4, 22, 20,  8,-14,-32,-16,  0;
/M: SY='H'; M= -2,  0,-16, -3, -3,-17,-12, 21,-20,-10,-21,-11,  7,-13,  0, -7, 19, 16,-13,-34, -5, -3;
/M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10,  0,-40,  0,-30,-30, 20,-10,  0,-10,  0,-10,-30,-40,-20, 10;
/M: SY='P'; M= -4,-17,-28,-17, -9,-18,-21,-20,  2,-16,-14, -8,-11, 27,-10,-20,  1, -1, -6,-30,-18,-13;
/M: SY='K'; M=-13, -3,-30, -3,  7,-27,-20, -7,-30, 44,-27,-10,  0,-13, 10, 42,-10,-10,-20,-20,-10,  7;
/M: SY='M'; M= 13,-11,-14,-18,-11,-12, -8, -9, -1,-10, -4, 15, -8,-14, -3,-13,  7,  2,  1,-26,-12, -7;
/M: SY='F'; M= -8,-30,-14,-34,-30, 32,-30,-26, 18,-24, 10,  6,-26,-30,-34,-20,-14, -4, 30,-14,  6,-30;
/M: SY='I'; M= -7,-30,-24,-37,-30,  0,-37,-30, 44,-27, 17, 17,-23,-23,-23,-27,-17, -7, 36,-23, -3,-30;
/M: SY='T'; M=  0,-12,-10,-18,-18, -6,-24,-24,  6,-14, -2, -2,-12,-18,-18,-14,  8, 30, 20,-30,-10,-18;
/M: SY='T'; M=  0,  0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10,  0,-10,-10,-10, 20, 50,  0,-30,-10,-10;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='E'; M= -6,  6,-22,  8, 32,-22,-20, -8,-22,  2,-16,-16,  0, -4,  8, -4,  8, 14,-18,-30,-16, 20;
/M: SY='G'; M= 20,-10,-22,-14,-16,-26, 42,-20,-28,-16,-22,-16, -4,-16,-16,-20,  4,-12,-18,-20,-26,-16;
/M: SY='K'; M=-10,  4,-30,  8, 30,-30,-20, -6,-30, 34,-26,-14,  0, -6, 14, 18, -6,-10,-24,-24,-14, 22;
/M: SY='H'; M=-20,  0,-30,  0,  0,-20,-20,100,-30,-10,-20,  0, 10,-20, 10,  0,-10,-20,-30,-30, 20,  0;
/M: SY='N'; M=-10, 40,-20, 20,  0,-20,  0, 10,-20,  0,-30,-20, 60,-20,  0,  0, 10,  0,-30,-40,-20,  0;
/M: SY='H'; M=-20,  0,-30,  0,  0,-20,-20,100,-30,-10,-20,  0, 10,-20, 10,  0,-10,-20,-30,-30, 20,  0;
/M: SY='D'; M=-16, 22,-34, 38, 12,-36,-14, -8,-32, -4,-30,-26,  4, 30, -4,-14, -4,-10,-30,-36,-24,  2;
/M: SY='V'; M= 20,-22,-10,-26,-22, -8,-18,-26, 14,-16,  2,  2,-22,-22,-22,-20, -2,  0, 30,-26,-14,-22;
/M: SY='P'; M=-10,-20,-40,-10,  0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10;
/I:         E1=0; IE=-105; DE=-105;
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 90 hits in 76 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 88 hits in 74 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 97.78 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • MATRIX_TYPE: protein_domain
  • Scaling database: UniProtKB/Swiss-Prot: reversed
  • Matrix author: CJA_Sigrist
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • FT_KEY: DNA_BIND
  • FT_DESC: WRKY
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
WRK10_ARATH (Q9LG05), WRK11_ARATH (Q9SV15), WRK12_ARATH (Q93WY4), 
WRK13_ARATH (Q9SVB7), WRK14_ARATH (Q9SA80), WRK15_ARATH (O22176), 
WRK16_ARATH (Q9FL92), WRK17_ARATH (Q9SJA8), WRK18_ARATH (Q9C5T4), 
WRK19_ARATH (Q9SZ67), WRK20_ARATH (Q93WV0), WRK21_ARATH (O04336), 
WRK22_ARATH (O04609), WRK23_ARATH (O22900), WRK24_ARATH (Q9FFS3), 
WRK25_ARATH (O22921), WRK26_ARATH (Q9C5T3), WRK27_ARATH (Q9FLX8), 
WRK28_ARATH (Q8VWJ2), WRK29_ARATH (Q9SUS1), WRK30_ARATH (Q9FL62), 
WRK31_ARATH (Q93WT0), WRK32_ARATH (P59583), WRK33_ARATH (Q8S8P5), 
WRK34_ARATH (O65590), WRK35_ARATH (O64747), WRK36_ARATH (Q9CAR4), 
WRK38_ARATH (Q8GWF1), WRK39_ARATH (Q9SR07), WRK40_ARATH (Q9SAH7), 
WRK41_ARATH (Q8H0Y8), WRK42_ARATH (Q9XEC3), WRK43_ARATH (Q8GY11), 
WRK44_ARATH (Q9ZUU0), WRK45_ARATH (Q9S763), WRK46_ARATH (Q9SKD9), 
WRK47_ARATH (Q9ZSI7), WRK48_ARATH (Q9FGZ4), WRK49_ARATH (Q9FHR7), 
WRK50_ARATH (Q8VWQ5), WRK51_ARATH (Q93WU9), WRK52_ARATH (Q9FH83), 
WRK53_ARATH (Q9SUP6), WRK54_ARATH (Q93WU8), WRK55_ARATH (Q9SHB5), 
WRK56_ARATH (Q8VWQ4), WRK57_ARATH (Q9C983), WRK58_ARATH (Q93WU7), 
WRK59_ARATH (Q9SJ09), WRK60_ARATH (Q9SK33), WRK61_ARATH (Q8VWV6), 
WRK62_ARATH (Q9LZV6), WRK63_ARATH (Q9C6H5), WRK64_ARATH (Q9C557), 
WRK65_ARATH (Q9LP56), WRK66_ARATH (Q9M8M6), WRK67_ARATH (Q93WV7), 
WRK68_ARATH (Q93WV6), WRK69_ARATH (Q93WV5), WRK70_ARATH (Q9LY00), 
WRK71_ARATH (Q93WV4), WRK72_ARATH (Q9LXG8), WRK74_ARATH (Q93WU6), 
WRK75_ARATH (Q9FYA2), WRKY1_ARATH (Q9SI37), WRKY1_DICDI (Q554C5), 
WRKY1_MAIZE (Q32SG4), WRKY2_ARATH (Q9FG77), WRKY3_ARATH (Q9ZQ70), 
WRKY4_ARATH (Q9XI90), WRKY6_ARATH (Q9C519), WRKY7_ARATH (Q9STX0), 
WRKY8_ARATH (Q9FL26), WRKY9_ARATH (Q9C9F0)
False positive hits (sequences which do not belong to the set under consideration):
ATAT1_TRYCC (Q4CQJ5), ATAT2_TRYCC (Q4DTX9)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1WJ2; 2AYD; 2LEX;

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