Entry: PS50847

General information about the entry

Entry name [info] GRAM_POS_ANCHORING
Accession [info] PS50847
Entry type [info] MATRIX
Date [info] MAY-2002 (CREATED); OCT-2013 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00373
Associated ProRule [info] PRU00477

Name and characterization of the entry

Description [info] Gram-positive cocci surface proteins LPxTG motif profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=38;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=35;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=-1.1366972; R2=0.0260992; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1361.9194336; R2=1.7382550; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=370; H_SCORE=2005; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=293; H_SCORE=1871; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='L'; M=-10,-30,-20,-30,-20,-10,-30,-20,-20,-60, 60,-20,-30,-50,-20,-20,-30,-10,-10,-19,-10,-20;
/M: SY='P'; M= -8,-20,-39,-10,-10,-30,-19,-20,-20,-10,-29,-20,-20, 87,-10,-20, -9,-10,-29,-30,-30,-10;
/M: SY='E'; M=  0,  6,-22,  6,  8,-23,-12,  0,-28,  6,  0,-12,  8,-12,  7,-10,  3,  5,-17,-28,-13,  7;
/M: SY='T'; M= 20,-10,-10,-10,-10,-11,-18,-20,-10,-10,-11,-10,-10,-10,-10,-11, 36, 50,-10,-30,-11,-10;
/M: SY='G'; M= 60,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 50,-20,-20,-20, 45,-20,-30,-20,-30,-20;
/M: SY='E'; M= -5, 13,-24, 19, 23,-27, -7, -6,-26, -1,-21,-19,  5, -8,  4, -7,  6, -1,-21,-32,-19, 13;
/M: SY='E'; M=  1,  5,-21,  2,  8,-22,-13, -6,-18,  5,-19,-20,  7,-20,  4, -1,  6,  3,-14,-29,-15,  5;
/M: SY='N'; M=  1,  6,-21,  4,  3,-21, -4, -7,-27,-10,-19,-13,  8,-12,  0, -4,  6, -1,-16,-29,-16,  1;
/M: SY='N'; M= -2, 10,-19,  4,  3,-20, -7, -3,-17, -3,-21,-13, 17,-20,  2, -5, 12,  7,-16,-33,-16,  2;
/M:         M=  0, -9,-22,-12, -9,-12,-16,-13, -4,-10, -7, -5, -4, -3, -9,-12, -2,  0, -5,-25,-11,-11;
/M: SY='F'; M= -6,-14,-22,-18,-14,  6,-18,-14, -1,-15,  0, -2, -9,-15,-14,-14, -7, -3, -3,-14,  1,-14;
/M: SY='F'; M= -8,-20,-20,-25,-18, 17,-20,-15,  3,-20, 12,  6,-15,-20,-18,-16,-12, -4,  0,-13,  5,-18;
/M: SY='T'; M=  0,-10,-18,-15,-10, -8,-16,-17, -2,-12, -1, -2, -8,-11,-11,-13,  1, 10,  0,-25,-10,-11;
/M: SY='I'; M=  6,-20,-18,-26,-20, -2,-18,-21, 13,-20, 10,  7,-17,-20,-17,-20, -8, -2, 12,-21, -6,-19;
/M: SY='A'; M= 15,-17,-15,-23,-16, -7,-13,-21,  4,-17,  7,  2,-16,-17,-16,-19, -3,  2,  9,-22,-11,-16;
/M: SY='G'; M= 10,-13,-23,-17,-18,-16, 32,-20,-22,-18,-15,-11, -7,-19,-18,-19, -1,-12,-15,-17,-20,-18;
/M: SY='L'; M=  7,-19,-18,-23,-18, -5, -8,-20,  3,-21, 10,  3,-16,-20,-17,-19, -8, -4,  4,-21,-10,-18;
/I:         I=-4; MI=0; MD=-22; IM=0; DM=-22;
/M: SY='L'; M= -3,-24,-18,-27,-20,  2,-24,-21, 17,-23, 24, 14,-22,-24,-18,-19,-14, -2, 15,-23, -5,-19;
/M: SY='M'; M= -1,-21,-17,-26,-19,  3,-20,-18, 12,-20, 13, 14,-18,-22,-16,-18, -9, -1, 11,-22, -4,-18;
/M: SY='A'; M= 10,-18,-16,-23,-17, -5,-13,-20,  6,-18,  7,  4,-15,-19,-15,-18, -3,  1,  8,-23,-10,-16;
/M: SY='V'; M=  5,-18,-18,-23,-19, -4,-10,-22,  5,-20,  6,  2,-15,-20,-18,-19, -5,  0,  8,-22,-10,-19;
/M: SY='A'; M=  9,-17,-19,-21,-17,-10,  0,-21, -1,-20,  3, -1,-13,-20,-16,-20, -3, -3,  2,-23,-13,-17;
/M: SY='G'; M=  9,-10,-23,-12,-16,-23, 37,-19,-26,-17,-21,-15, -3,-15,-16,-18,  5, -8,-17,-23,-24,-16;
/M: SY='L'; M=  4,-20,-17,-24,-19, -2,-10,-20,  5,-21,  9,  4,-16,-22,-18,-20, -7, -4,  6,-21, -8,-19;
/M: SY='L'; M= -1,-22,-19,-25,-20,  6,-13,-19,  6,-21, 11,  5,-18,-24,-20,-18,-11, -6,  7,-16, -2,-20;
/M: SY='L'; M= -1,-24,-18,-28,-21,  8,-22,-21, 12,-24, 21,  8,-22,-25,-20,-20,-16, -5,  9,-15,  0,-20;
/M: SY='L'; M= -2,-21,-18,-24,-19,  9,-16,-18,  4,-20, 11,  3,-18,-24,-19,-17,-10, -3,  6,-16,  1,-19;
/M: SY='V'; M= -1,-16,-21,-19,-13, -3,-14,-17, -2, -7,  0,  0,-12,-20,-12, -7, -7, -4,  1,-19, -5,-13;
/M: SY='K'; M= -8, -9,-26,-10, -2,-18,-16,-11,-18, 20,-15, -6, -6,-16, -1, 19, -9, -8,-10,-21,-15, -2;
/M: SY='R'; M=-13, -3,-28, -5,  2,-22,-16, -4,-27, 29,-24,-11,  3,-15,  6, 39, -6, -8,-19,-20,-10,  2;
/M: SY='R'; M=-14, -5,-28, -5,  5,-24,-19, -3,-27, 32,-22, -9,  1,-16, 10, 45, -8, -9,-19,-21,-10,  5;
/M: SY='K'; M=-11,  4,-29,  4, 15,-28,-18, -5,-29, 33,-26,-13,  4,-11, 11, 28, -6, -8,-22,-24,-13, 12;
/M: SY='E'; M= -7,  6,-25,  7, 17,-25,-16, -5,-23, 15,-22,-13,  6,-10,  9, 10,  1, -2,-19,-27,-14, 12;
/M: SY='D'; M= -7, 18,-24, 19, 12,-26, -9,  1,-25,  4,-23,-17, 16,-13,  4, -1,  4, -4,-21,-33,-16,  8;
/M: SY='K'; M= -9,  8,-23,  9, 13,-28,-14, -4,-25, 17,-24,-13,  7,-12,  9,  8, -1, -6,-20,-28,-15, 11;
/M: SY='N'; M=  0, 11,-19,  5,  5,-24, -7, -5,-21,  7,-23,-14, 16,-14,  3,  0,  5, -2,-19,-30,-17,  4;
/M: SY='K'; M= -7,  2,-26,  3, 10,-21,-18, -8,-19, 16,-14, -8,  0,-13,  5,  7, -7, -9,-16,-24,-11,  7;
/M: SY='A'; M=  1, -1,-22, -4,  1,-11,-11, -4,-19,  0,-14,-10,  0,-15, -2, -1, -2, -5,-15,-21, -9, -1;
/I:         E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 171 in 171 different sequences
Number of true positive hits 168 in 168 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 21
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 98.25 %
Recall (true positives / (true positives + false negatives)) 88.89 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] C_Lachaize, CJA_Sigrist
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
168 sequences

ARP4_STRPY  (P13050    ), ASA1_ENTFA  (P17953    ), BAG_STRAG   (P27951    ), 
BBP_STAAR   (Q6GJA6    ), BBP_STAAU   (Q14U76    ), BCA_STRA1   (Q02192    ), 
C5AP_STRP3  (P0DD34    ), C5AP_STRP6  (Q5X9R0    ), C5AP_STRP8  (Q8NZ80    ), 
C5AP_STRPQ  (P0DD35    ), C5AP_STRPY  (P15926    ), CLFA_STAA8  (Q2G015    ), 
CLFA_STAAC  (Q5HHM8    ), CLFA_STAAE  (Q53653    ), CLFA_STAAM  (Q932C5    ), 
CLFA_STAAN  (Q99VJ4    ), CLFA_STAAR  (Q6GIK4    ), CLFA_STAAS  (Q6GB45    ), 
CLFA_STAAW  (Q8NXJ1    ), CLFB_STAA8  (Q2FUY2    ), CLFB_STAAC  (Q5HCR7    ), 
CLFB_STAAE  (O86476    ), CLFB_STAAM  (Q99R07    ), CLFB_STAAN  (Q7A382    ), 
CLFB_STAAR  (Q6GDH2    ), CLFB_STAAS  (Q6G644    ), CLFB_STAAW  (Q8NUL0    ), 
DEXT_STRDO  (P39653    ), DEXT_STRMU  (Q54443    ), FAP1_STRPA  (A1C3L3    ), 
FBE_STAEP   (O70022    ), FM1_ACTVI   (P18477    ), FM2_ACTNA   (P12616    ), 
FNBA_STAA1  (A7X6I5    ), FNBA_STAA3  (Q2FE03    ), FNBA_STAA8  (P14738    ), 
FNBA_STAAB  (Q2YW62    ), FNBA_STAAC  (Q5HD51    ), FNBA_STAAM  (Q99RD2    ), 
FNBA_STAAN  (Q7A3J7    ), FNBA_STAAR  (Q6GDU5    ), FNBA_STAAS  (Q6G6H3    ), 
FNBA_STAAW  (Q8NUU7    ), GH101_STRPN (Q2MGH6    ), GH101_STRR6 (Q8DR60    ), 
IGA1A_STRPN (Q97QP7    ), IGA1B_STREE (Q54875    ), IGA1_STRR6  (Q59947    ), 
IGA1_STRSA  (Q59986    ), INLA_LISM4  (G2K3G6    ), INLA_LISMF  (Q723K6    ), 
INLA_LISMO  (P0DJM0    ), INLI_LISMF  (Q723X5    ), INLI_LISMO  (Q8YA32    ), 
INLJ_LISMF  (Q71VU0    ), INLJ_LISMO  (Q8Y3L4    ), INUS_LACJO  (Q74K42    ), 
ISDA_STAA1  (A7X148    ), ISDA_STAA2  (A6U0U7    ), ISDA_STAA3  (Q2FHV1    ), 
ISDA_STAA8  (Q2FZE9    ), ISDA_STAA9  (A5IS16    ), ISDA_STAAB  (Q2YX95    ), 
ISDA_STAAC  (Q5HGV4    ), ISDA_STAAE  (A6QG31    ), ISDA_STAAM  (Q99UX4    ), 
ISDA_STAAN  (Q7A655    ), ISDA_STAAR  (Q6GHV6    ), ISDA_STAAS  (Q6GA85    ), 
ISDA_STAAT  (A8Z1R0    ), ISDA_STAAU  (P0C1S5    ), ISDA_STAAW  (Q7A152    ), 
ISDB_STAA1  (A7X146    ), ISDB_STAA2  (A6U0U6    ), ISDB_STAA3  (Q2FHV2    ), 
ISDB_STAA8  (Q2FZF0    ), ISDB_STAA9  (A5IS15    ), ISDB_STAAB  (Q2YX96    ), 
ISDB_STAAC  (Q5HGV5    ), ISDB_STAAE  (A6QG30    ), ISDB_STAAM  (Q99UX5    ), 
ISDB_STAAN  (Q7A656    ), ISDB_STAAR  (Q6GHV7    ), ISDB_STAAS  (Q6GA86    ), 
ISDB_STAAT  (P0C7J5    ), ISDB_STAAW  (Q8NX66    ), LEVS_LACGS  (D3WYW0    ), 
LEVS_LACSN  (Q70XJ9    ), M12_STRPY   (P19401    ), M21_STRPY   (P50468    ), 
M22_STRPY   (P50469    ), M24_STRPY   (P12379    ), M49_STRP9   (P16947    ), 
M5_STRP5    (P02977    ), M6A_STRP6   (Q5X9Q9    ), M6B_STRPY   (P08089    ), 
MRP4_STRPY  (P30141    ), MRP_STRSU   (P32653    ), MX_STRP9    (P16946    ), 
NANA_STREE  (P62575    ), NANA_STRR6  (P62576    ), NTPES_BACSU (O34313    ), 
P1P_LACLC   (P16271    ), P2P_LACLC   (P15293    ), P2P_LACPA   (Q02470    ), 
P3P_LACLS   (P15292    ), PAA_STRCG   (Q9LBG3    ), PAB_FINMA   (Q51911    ), 
PAC_STRMG   (P11657    ), PAS_STRIT   (Q9KW51    ), PLS_STAAC   (Q5HJU7    ), 
PLS_STAAM   (Q931E9    ), PLS_STAAN   (P61598    ), PLS_STAAU   (P80544    ), 
PLS_STAAW   (Q8NUV0    ), PLS_STAES   (Q8CQD9    ), SASG_STAA8  (Q2G2B2    ), 
SDRC_STAA3  (Q2FJ79    ), SDRC_STAA8  (Q2G0L5    ), SDRC_STAAC  (Q5HIB4    ), 
SDRC_STAAE  (O86487    ), SDRC_STAAM  (Q99W48    ), SDRC_STAAN  (Q7A781    ), 
SDRC_STAAR  (Q6GJA7    ), SDRC_STAAS  (Q6GBS6    ), SDRC_STAAW  (Q8NXX7    ), 
SDRD_STAA3  (Q2FJ78    ), SDRD_STAA8  (Q2G0L4    ), SDRD_STAAC  (Q5HIB3    ), 
SDRD_STAAE  (O86488    ), SDRD_STAAM  (Q99W47    ), SDRD_STAAN  (Q7A780    ), 
SDRD_STAAS  (Q6GBS5    ), SDRD_STAAW  (Q8NXX6    ), SDRE_STAA3  (Q2FJ77    ), 
SDRE_STAAC  (Q5HIB2    ), SDRE_STAAE  (O86489    ), SDRE_STAAM  (Q932F7    ), 
SDRE_STAAN  (Q99W46    ), SDRE_STAAS  (Q6GBS4    ), SDRE_STAAW  (Q8NXX5    ), 
SDRF_STAEP  (Q9KI14    ), SDRF_STAES  (Q8CMP4    ), SDRG_STAEP  (Q9KI13    ), 
SDRI_STASA  (Q8KWM1    ), SPAA_STRDO  (P21979    ), SPAP_STRMU  (P23504    ), 
SPA_STAA8   (P02976    ), SPA_STAAM   (P0A015    ), SPA_STAAN   (P99134    ), 
SPA_STAAU   (P38507    ), SPG1_STRSG  (P06654    ), SPG2_STRSG  (P19909    ), 
SPH_STRP1   (P50470    ), SRAP_STAA3  (Q2FDK5    ), SRAP_STAA8  (Q2FUW1    ), 
SRAP_STAAC  (Q5HCP3    ), SRAP_STAAM  (Q99QY4    ), SRAP_STAAN  (Q7A362    ), 
SRAP_STAAR  (Q6GDE9    ), SRAP_STAAS  (Q6G620    ), SRAP_STAAU  (Q8VQ99    ), 
SRAP_STAAW  (Q8NUJ3    ), SRAP_STAHJ  (Q4L9P0    ), SSP5_STRGN  (P16952    ), 
STRH_STRPN  (P49610    ), TEE6_STRP6  (P18481    ), WAPA_STRMU  (P11000    )
» more

UniProtKB/Swiss-Prot
False negative sequences
21 sequences

C5AP_STRP1  (P58099    ), CNA_STAAU   (Q53654    ), FRUA_STRMU  (Q03174    ), 
GH101_RENSM (A9WNA0    ), GSPB_STRGN  (Q939N5    ), HYSA_STRPN  (Q54873    ), 
ISDH_STAA3  (Q2FG07    ), ISDH_STAA8  (Q2FXJ2    ), ISDH_STAAB  (Q2YTF7    ), 
ISDH_STAAC  (Q5HF43    ), ISDH_STAAM  (Q931P4    ), ISDH_STAAN  (Q99TD3    ), 
ISDH_STAAS  (Q6G8J7    ), ISDH_STAAW  (Q8NW39    ), MANA_BIFAA  (A1A278    ), 
NISP_LACLL  (Q07596    ), PFBA_STRR6  (Q8CYC9    ), UAFA_STAS1  (Q4A0V8    ), 
ZMPB_STRPN  (Q9L7Q2    ), ZMPB_STRR6  (Q8DQN5    ), ZMPC_STRPN  (Q97T80    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

M32_STRTR   (P83330    ), PAM_STRPY   (P49054    )

		
UniProtKB/Swiss-Prot
False positive sequences
3 sequences

MRC2_RAT    (Q4TU93    ), PPR29_HUMAN (Q5R3F8    ), PPR29_MOUSE (Q68FM6    )

		

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