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Entry: PS50966

General information about the entry

Entry name [info] ZF_SWIM
Accession [info] PS50966
Entry type [info] MATRIX
Date [info] 01-MAR-2004 CREATED; 01-OCT-2013 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC50966
Associated ProRule [info] PRU00325

Name and characterization of the entry

Description [info] Zinc finger SWIM-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=38;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=35;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1868844; R2=0.0123659; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=471; N_SCORE=8.0; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=349; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-9; D=-20; I=-20; B0=-100; B1=-150; E0=-100; E1=-110; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B0=0; B1=0; BI=-105; BD=-105;
/M: SY='Y'; M=-16,-21,-26,-24,-20, 30,-28, -9,  0,-15,  1,  1,-17,-27,-16,-13,-17, -9,  4, -2, 47,-20;
/M: SY='T'; M= -9, -7,-24, -7,  2,-12,-19, -6,-13,  2,-11, -6, -6,-14,  1,  5, -2, 13,-10,-20, -6,  1;
/M: SY='V'; M= -1,-25, -9,-28,-26, -3,-29,-26, 23,-19,  8,  8,-24,-26,-24,-19, -8,  2, 35,-29, -9,-25;
/M: SY='Q'; M= -6, -4,-23, -5,  0,-15,-16, -3,-12, -2,-12, -5, -2,-14,  2, -1, -1, -1,-10,-22, -7,  0;
/M: SY='I'; M= -4,-23,-20,-26,-20,  0,-24,-18, 16,-21, 12,  8,-20,-23,-17,-19,-14, -7, 14,-18, -2,-20;
/M: SY='D'; M= -7,  6,-23,  8,  4,-22, -5, -7,-21, -2,-18,-13,  3,-13, -1, -5,  0, -5,-17,-26,-13,  1;
/I:         I=-4; MD=-21;
/M: SY='L'; M= -6, -8,-20, -9, -6, -6,-14,-11, -4, -9,  1, -1, -7,-15, -7, -8, -7, -5, -4,-18, -6, -7; D=-4;
/I:         I=-4; MD=-21;
/M: SY='D'; M= -6,  7,-21,  9,  6,-20, -7, -4,-20,  2,-18,-13,  6, -9,  1,  0,  1, -3,-16,-24,-12,  3; D=-4;
/I:         I=-4; MD=-21;
/M: SY='D'; M= -5,  6,-18,  7,  4,-19, -5, -5,-18,  1,-15,-11,  6, -8,  0, -1,  0, -3,-15,-24,-13,  1; D=-4;
/I:         I=-4; MD=-21;
/M: SY='D'; M= -4,  2,-18,  3,  2,-16, -3, -6,-17, -1,-15,-10,  0, -9, -3, -3, -1, -5,-13,-21,-11, -1; D=-4;
/I:         I=-4; MD=-21;
/M: SY='E'; M= -6,  0,-19,  1,  2,-12,-11, -5,-13, -2,-11, -8, -1,-10, -2, -2, -1, -1,-10,-18, -5, -1; D=-4;
/I:         I=-4; MI=0; MD=-21;
/M:         M= -4, -8,-15, -9, -5, -6,-10,-10, -2, -7, -2, -2, -7,-13, -7, -7, -5, -4,  0,-13, -5, -6; D=-4;
/I:         I=-4; MI=-21; MD=-21; IM=-21; DM=-21;
/M: SY='E'; M= -4,  0,-18, -1,  1,-14, -7, -5,-13, -2,-12, -7,  0,-10, -1, -3,  0, -2,-10,-20, -8,  0; D=-4;
/I:         I=-4; DM=-21;
/M:         M=  0,-10,-13,-13,-12,-11, -9,-11,-11,-10,-13, -8, -6,-16,-10, -9, -1, -3, -7,-19, -7,-12;
/M: SY='S'; M= -6, -2,-21, -3,  0,-10,-16, -4,-17,  1,-16,-11,  0,-15, -1,  1,  3,  3,-13,-20, -1, -1;
/M: SY='C'; M=-30,-30,140,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30;
/M: SY='S'; M=  3,  5,-15, 20,  1,-19, -7,-11,-18, -8,-21,-16, 15,-10, -3,-10, 62, 59,-10,-35,-17, -1;
/M: SY='C'; M=-30,-30,140,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30;
/M: SY='P'; M= -6, -8,-26, -5,  2,-23,-12,-10,-22,  1,-22,-14, -6, 18, -2,  0, -3, -6,-21,-26,-17, -2;
/I:         I=-4; MD=-21;
/M:         M= -4, -4,-19, -4, -4,-11,-12, -6,-13, -4,-11, -7, -4,-17, -4, -5, -4, -6,-10,-14, -3, -5; D=-4;
/I:         I=-4; MD=-21;
/M: SY='F'; M=-11,-18,-22,-21,-18, 25,-15,-11, -7,-17, -3, -4,-14,-18,-19,-14,-14,-10, -8, 19, 16,-16; D=-4;
/I:         I=-4; MD=-21;
/M: SY='E'; M= -4,  2,-19,  3, 10,-18,-12, -3,-14,  3,-11, -7,  1, -8, 10,  0, -1, -4,-14,-20,-10, 10; D=-4;
/I:         I=-4; MI=0; MD=-21; IM=0; DM=-21;
/M: SY='H'; M= -9, -2,-19, -4, -3, -9,-11,  1,-13, -2,-10, -6,  0,-16, -2,  1, -2, -2,-12,-18, -1, -3; D=-4;
/I:         I=-4; DM=-21;
/M: SY='G'; M= -4, -3,-26, -5, -6,-23, 17, -2,-29, -2,-24,-14,  4,-15, -5, -1,  0,-10,-23,-23,-15, -6;
/M:         M= -8,-12,-26,-15,-14, -4, -9,-10, -4,-13, -4, -3, -7,-17,-12,-11,-10, -8, -7,-13,  0,-14;
/M: SY='P'; M=-10,-15,-26,-14,-10,-10,-22,-14, -5,-13, -6, -4,-15, 23,-11,-15,-13, -9,-10,-18, -7,-13;
/M: SY='C'; M=-30,-30,140,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30;
/M: SY='K'; M= -6, -6,-22, -7,  2,-21,-18, -8,-20, 19,-21, -9, -2,-13,  4, 16, -2, -4,-13,-22, -9,  2;
/M: SY='H'; M=-30,-30,-30,-30,-30,-30,-30,140,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30,-30;
/M: SY='I'; M=  3,-22,-17,-28,-21, -6, -3,-22, 19,-19, 10, 11,-18,-21,-14,-19,-11, -5, 17,-22, -7,-19;
/M: SY='L'; M= 10,-24,-17,-28,-21,  1, -4,-28, 16,-21, 17,  9,-22,-34,-18,-19,-14, -6, 16,-18, -1,-21;
/M: SY='A'; M= 27,-10,-14,-17, -9,-16,  5,-24,-12, -7,-11, -8, -8,-13, -9,-11, -5, -1, -4,-20,-14,-10;
/M: SY='V'; M= 15,-24,-13,-26,-22,-10, -3,-24, 16,-20, 13,  7,-23,-24,-21,-20, -8, -5, 25,-25, -9,-22;
/M: SY='L'; M=  5,-19,-18,-23,-14,  4,-23,-13,  6,-15, 12,  7,-17,-22,-13,-13,-14, -7,  4,-16,  3,-14;
/M: SY='L'; M=-10,-15,-22,-18,  0,  1,-24, -8,  3,-13,  9,  5,-12,-22,  2, -9,-13, -5, -1,-15,  6,-11;
/M: SY='A'; M=  1, -8,-18,-11, -6,-11,-14, -1, -5, -5, -5, -4, -5,-17, -3, -4,  0, -1, -8,-22, -3, -5;
/M: SY='L'; M= -6,-17,-14,-20,-14, -3,-22,-11,  0,-10,  6,  6,-15,-22,-10, -7,-12, -7,  3,-14,  3,-13;
/M: SY='N'; M= -4, -1,-21, -4, -1,-18, -5, -7,-17, -1,-14, -9,  2,-17, -1, -2, -2, -6,-15,-24,-11, -2;
/I:         E0=0; E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 47 in 46 different sequences
Number of true positive hits 46 in 45 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.87 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Feature key [info] ZN_FING
Feature description [info] SWIM-type
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
45 sequences

FAR1_ARATH  (Q9SWG3    ), FHY3_ARATH  (Q9LIE5    ), FRS10_ARATH (Q9LKR4    ), 
FRS11_ARATH (Q9SY66    ), FRS12_ARATH (Q3E7I5    ), FRS1_ARATH  (Q5UBY2    ), 
FRS2_ARATH  (Q3EBQ3    ), FRS3_ARATH  (Q9ZVC9    ), FRS4_ARATH  (Q6NQJ7    ), 
FRS5_ARATH  (Q9SZL8    ), FRS6_ARATH  (Q9SSQ4    ), FRS7_ARATH  (Q9M8J3    ), 
FRS8_ARATH  (Q9S793    ), FRS9_ARATH  (Q9SZL7    ), IRLC_DICDI  (Q55DJ8    ), 
M3K1_HUMAN  (Q13233    ), M3K1_MOUSE  (P53349    ), M3K1_RAT    (Q62925    ), 
SWS1_SCHPO  (O13600    ), Y018_MYCGE  (P47264    ), Y020_MYCPN  (P75093    ), 
Y1109_ARCFU (O29156    ), Y1493_METJA (Q58888    ), Y2102_MYCTU (O53500    ), 
YEHQ_ECOLI  (P33353    ), YWQB_BACSU  (P96714    ), ZSWM1_HUMAN (Q9BR11    ), 
ZSWM1_MOUSE (Q9CWV7    ), ZSWM2_HUMAN (Q8NEG5    ), ZSWM2_MOUSE (Q9D9X6    ), 
ZSWM3_HUMAN (Q96MP5    ), ZSWM3_MOUSE (Q8CFL8    ), ZSWM4_HUMAN (Q9H7M6    ), 
ZSWM4_MOUSE (Q8C7B8    ), ZSWM5_HUMAN (Q9P217    ), ZSWM5_MOUSE (Q80TC6    ), 
ZSWM6_HUMAN (Q9HCJ5    ), ZSWM6_MOUSE (Q80TB7    ), ZSWM7_DANRE (A4FVI0    ), 
ZSWM7_DICDI (Q55FI7    ), ZSWM7_HUMAN (Q19AV6    ), ZSWM7_MOUSE (Q9CWQ2    ), 
ZSWM8_BOVIN (A7E305    ), ZSWM8_HUMAN (A7E2V4    ), ZSWM8_MOUSE (Q3UHH1    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

SYE_HALMA   (Q5V5N9    )

		

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