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Entry: PS51008

General information about the entry

Entry name [info] MULTIHEME_CYTC
Accession [info] PS51008
Entry type [info] MATRIX
Date [info] 01-AUG-2004 CREATED; 01-AUG-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00169

Name and characterization of the entry

Description [info] Multiheme cytochrome c family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=15;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR';
/DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A    B    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y    Z
/I:         B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105;
/M: SY='N'; M=  -3,  -2, -70,  -4,  -1, -19, -18, -10, -15,  -2, -14,  -9,   1, -11,  -2,  -4,  -1,  -4, -12, -24, -13,  -2;
/I:         I0=0; I=-1;
/M: SY='N'; M=  -8,   0, -70,  -1,  -2, -16, -12, -80, -16,  -1, -15, -10,   0,  -7,  -2,  -1,  -1,   0, -14, -23, -10,  -3;
/M: SY='E'; M=  -4,   2, -90,   3,   5, -24,  -5, -30, -20,  -3, -20, -13,   2,  -3,   2,  -4,   2,  -5, -18, -28, -17,   2;
/M: SY='A'; M=   1,  -8, -70,  -8,  -1, -19, -17, -30,  -8,   1,  -9,  -5,  -5, -10,  -3,  -3,  -4,  -4,  -3, -25, -13,  -3;
/M: SY='S'; M=  -2,   1, -70,  -2,  -4,  -5,  -3, -30, -17,  -8, -16, -12,   3, -15,  -6,   0,   6,   6, -12, -24, -12,  -5;
/M: SY='C'; M=   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='A'; M=   6, -14, -80, -19, -14, -10, -14, -55,   1, -11,  -3,  -1, -11, -48, -10,  -9,  -1,   1,   5, -19,  -7, -13;
/M: SY='S'; M=   2,   8, -80,   7,   1, -21,   0, -58, -20,  -6, -20, -15,   7, -42,  -1,  -9,  11,   7, -15, -29, -14,   0;
/M: SY='C'; M=   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='H'; M=   *,   *,   *,   *,   *,   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='N'; M=  -1,  -1, -70,  -4,  -4, -18, -25, -10, -13,  -3, -14,  -7,   3, -16, -10,  -4,   3,   0,  -4, -28, -14,  -3;
/M: SY='E'; M=  -5,  -1, -70,   0,   2, -19,  -9, -30, -16,  -4, -16, -10,  -2,  -1,  -2,  -7,  -2,  -6, -15, -25, -14,  -1;
/M: SY='E'; M=  -6,  -2, -70,  -2,   3, -19, -25, -30, -15,  -1, -15,  -9,  -2,  -5,   2,  -4,  -3,  -5, -15, -23,  -8,   1;
/M: SY='P'; M=  -3,   1, -70,   2,   1, -17,  -8, -30, -20,  -5, -20, -15,   0,   3,  -6,  -9,   2,  -2, -16, -26, -15,  -3;
/I:         I0=0; I=-1;
/M: SY='E'; M=  -1,   0,-110,   1,   6, -20, -10, -30, -19,  -1, -18, -11,  -1,  -4,   4,  -5,   0,  -5, -17, -24, -12,   4;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 153 in 145 different sequences
Number of true positive hits 153 in 145 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.84 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] N_Hulo
Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
145 sequences

C554_CHLAA  (P33325    ), C554_NITEU  (Q57142    ), CYC32_DESNO (P38554    ), 
CYC32_DESVH (Q727P6    ), CYC3A_DESAF (P94690    ), CYC3B_DESAF (P94691    ), 
CYC3_DESDE  (P00134    ), CYC3_DESGI  (P00133    ), CYC3_DESSA  (P00135    ), 
CYC3_DESVH  (P00131    ), CYC3_SHEFN  (O33731    ), CYC9_DESDA  (Q9RN68    ), 
CYCB_GEOSK  (D7ALQ0    ), CYCB_GEOSL  (Q749K5    ), CYCC_GEOSK  (D7ALP6    ), 
CYCC_GEOSL  (Q749L1    ), CYCR_ALLVD  (O82947    ), CYCR_BLAVI  (P07173    ), 
CYCR_ROSDO  (P26278    ), CYCR_RUBGI  (P51758    ), CYCR_THETI  (D2Z0P5    ), 
CYCX_NITEU  (Q50926    ), FRD2_SHEFN  (Q9Z4P0    ), FRDA_SHEFN  (Q07WU7    ), 
FRDA_SHEFR  (P0C278    ), FRDA_SHEON  (P83223    ), HAO_NITEU   (Q50925    ), 
HDH_KUEST   (Q1PW30    ), HMEE_ARCFU  (O29747    ), HMWC_DESVH  (P24092    ), 
MAUG_METME  (Q50233    ), MCCA_SHEON  (Q8EJI6    ), MCCA_WOLSU  (Q7MSJ8    ), 
NAPB_AZOBR  (Q8VU46    ), NAPB_BRAJP  (Q8KY07    ), NAPB_CUPNH  (P39186    ), 
NAPB_ECOLI  (P0ABL3    ), NAPB_HAEIN  (P44654    ), NAPB_PARPN  (Q56351    ), 
NAPB_RHIGA  (Q9Z3W3    ), NAPB_RHOS4  (Q53177    ), NAPB_RHOSH  (O88160    ), 
NAPB_SHIFL  (P0ABL4    ), NAPB_WOLSU  (Q7M963    ), NAPC_ECO57  (P0ABL7    ), 
NAPC_ECOL6  (P0ABL6    ), NAPC_ECOLI  (P0ABL5    ), NAPC_HAEIN  (P44655    ), 
NAPC_PARPN  (Q56352    ), NAPC_RHOS4  (Q53178    ), NIRT_PSEST  (P24038    ), 
NIR_THIND   (L0DSL2    ), NRFA_ALISL  (B6EH98    ), NRFA_ARCB4  (A8ERP8    ), 
NRFA_BACFN  (Q5LI95    ), NRFA_BACFR  (Q64ZA7    ), NRFA_BACTN  (Q8A7V7    ), 
NRFA_CITK8  (A8AN26    ), NRFA_DESAD  (C6BYZ2    ), NRFA_DESPS  (Q6ARF1    ), 
NRFA_ECO24  (A7ZUU5    ), NRFA_ECO27  (B7UPN8    ), NRFA_ECO45  (B7MJT8    ), 
NRFA_ECO55  (B7LB19    ), NRFA_ECO57  (P0ABL0    ), NRFA_ECO5E  (B5Z1D1    ), 
NRFA_ECO7I  (B7NSN2    ), NRFA_ECO81  (B7N2T7    ), NRFA_ECO8A  (B7M7Y3    ), 
NRFA_ECOBW  (C5A163    ), NRFA_ECODH  (B1XCV6    ), NRFA_ECOHS  (A8A7H1    ), 
NRFA_ECOK1  (A1AIR1    ), NRFA_ECOL5  (Q0T9X8    ), NRFA_ECOL6  (Q8CVI1    ), 
NRFA_ECOLC  (B1IUI1    ), NRFA_ECOLI  (P0ABK9    ), NRFA_ECOLU  (B7NG13    ), 
NRFA_ECOSE  (B6I5T8    ), NRFA_ECOSM  (B1LPN5    ), NRFA_ECOUT  (Q1R3J6    ), 
NRFA_EDWI9  (C5BES4    ), NRFA_HAEDU  (Q7VNX8    ), NRFA_HAEI8  (Q4QLL8    ), 
NRFA_HAEIN  (P45017    ), NRFA_MANHA  (Q06PW6    ), NRFA_MANSM  (Q65RI4    ), 
NRFA_PARD8  (A6L890    ), NRFA_PASMU  (Q9CPL4    ), NRFA_PECAS  (Q6D613    ), 
NRFA_PECCP  (C6DK80    ), NRFA_PHOPR  (Q6LSQ7    ), NRFA_PORGI  (Q7MTW1    ), 
NRFA_SALA4  (B5F2F2    ), NRFA_SALAR  (A9MGK5    ), NRFA_SALCH  (Q57GV0    ), 
NRFA_SALDC  (B5FRF3    ), NRFA_SALEP  (B5QZA1    ), NRFA_SALG2  (B5R941    ), 
NRFA_SALHS  (B4TEB5    ), NRFA_SALNS  (B4T1X2    ), NRFA_SALPA  (Q5PJ02    ), 
NRFA_SALPB  (A9N1R7    ), NRFA_SALPC  (C0Q554    ), NRFA_SALPK  (B5BJZ8    ), 
NRFA_SALSV  (B4TRK5    ), NRFA_SALTI  (Q8Z1Q9    ), NRFA_SALTY  (Q8ZKF5    ), 
NRFA_SHEAM  (A1S3A0    ), NRFA_SHEFN  (Q087T3    ), NRFA_SHEON  (Q8EAC7    ), 
NRFA_SHEPC  (A4Y382    ), NRFA_SHESA  (A0KSX7    ), NRFA_SHESH  (A8FRR9    ), 
NRFA_SHESM  (Q0HMH8    ), NRFA_SHESR  (Q0HRB0    ), NRFA_SHESW  (A1RNQ3    ), 
NRFA_SHEWM  (B1KFU9    ), NRFA_SHIB3  (B2TXA4    ), NRFA_SHIBS  (Q31TS5    ), 
NRFA_SHIFL  (Q83P93    ), NRFA_SHISS  (Q3YUR5    ), NRFA_SULDE  (Q9Z4P4    ), 
NRFA_VIBF1  (Q5E4J7    ), NRFA_VIBFM  (B5FEY0    ), NRFA_VIBPA  (Q87ND9    ), 
NRFA_VIBVU  (Q8D8E5    ), NRFA_VIBVY  (Q7MM23    ), NRFA_WOLSU  (Q9S1E5    ), 
NRFB_ECOL6  (P0ABL2    ), NRFB_ECOLI  (P0ABL1    ), NRFB_HAEIN  (P45016    ), 
NRFH_WOLSU  (Q9S1E6    ), PCRC_DECAR  (Q47CW8    ), QRCA_DESVH  (P0DOV3    ), 
SOXA_PARPN  (O33434    ), TORC_ECO57  (P58359    ), TORC_ECOLI  (P33226    ), 
TORY_ECO57  (P58361    ), TORY_ECOLI  (P52005    ), TORY_HAEIN  (P44799    ), 
Y1237_ARCFU (O29031    ), YEBS_ECO57  (P0AD04    ), YEBS_ECOLI  (P0AD03    ), 
YFCC_ALLVD  (Q06536    )
» more

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

CYC31_DESNO (P00136    ), CYC3_DESAC  (P00137    ), CYC3_DESVM  (P00132    ), 
CYCX_DESDA  (P81040    ), NAPB_SHEON  (Q8EIJ4    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

CYC31_DESVU (P81149    ), CYC32_DESVU (P81151    ), CYC35_DESAC (P81079    )

		
PDB
[Detailed view]
118 PDB

19HC; 1A2I; 1AQE; 1BVB; 1CZJ; 1D4C; 1D4D; 1D4E; 1DXR; 1E39; 1FGJ; 1FS7; 1FS8; 1FS9; 1FT5; 1FT6; 1GU6; 1GWS; 1GX7; 1H29; 1JRX; 1JRY; 1JRZ; 1KSS; 1KSU; 1LJ1; 1M64; 1MDV; 1OFW; 1OFY; 1OGY; 1P2E; 1P2H; 1PRC; 1Q9I; 1QDB; 1QJD; 1QN0; 1QN1; 1QO8; 1R2C; 1VRN; 1WAD; 1Y0P; 2B7R; 2B7S; 2BPN; 2BQ4; 2C1D; 2CTH; 2CVC; 2CYM; 2E80; 2E81; 2I5N; 2JBL; 2K3V; 2OT4; 2OZY; 2P0B; 2PRC; 2RDZ; 2RF7; 2WJM; 2WJN; 2X5U; 2X5V; 2ZO5; 3BNF; 3BNG; 3BNH; 3BNJ; 3CAO; 3CAR; 3D1I; 3D38; 3F29; 3FO3; 3G7F; 3GM6; 3L1T; 3LG1; 3LGQ; 3ML1; 3MMO; 3O5A; 3OWM; 3PRC; 3RKH; 3S7W; 3SCE; 3T6D; 3T6E; 3TOR; 3UBR; 3UU9; 3WMM; 4AC5; 4CAS; 4FAS; 4L38; 4L3X; 4L3Y; 4L3Z; 4N4N; 4N4O; 4Q0T; 4Q17; 4Q1O; 4Q4U; 4Q5B; 4Q5C; 4RKM; 4RKN; 4WJY; 5PRC; 6PRC; 7PRC
» more

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