PROSITE

/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=15;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR';
/DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;

                A    B    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y    Z
/I:         B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105;
/M: SY='N'; M=  -3,  -2, -70,  -4,  -1, -19, -18, -10, -15,  -2, -14,  -9,   1, -11,  -2,  -4,  -1,  -4, -12, -24, -13,  -2;
/I:         I0=0; I=-1;
/M: SY='N'; M=  -8,   0, -70,  -1,  -2, -16, -12, -80, -16,  -1, -15, -10,   0,  -7,  -2,  -1,  -1,   0, -14, -23, -10,  -3;
/M: SY='E'; M=  -4,   2, -90,   3,   5, -24,  -5, -30, -20,  -3, -20, -13,   2,  -3,   2,  -4,   2,  -5, -18, -28, -17,   2;
/M: SY='A'; M=   1,  -8, -70,  -8,  -1, -19, -17, -30,  -8,   1,  -9,  -5,  -5, -10,  -3,  -3,  -4,  -4,  -3, -25, -13,  -3;
/M: SY='S'; M=  -2,   1, -70,  -2,  -4,  -5,  -3, -30, -17,  -8, -16, -12,   3, -15,  -6,   0,   6,   6, -12, -24, -12,  -5;
/M: SY='C'; M=   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='A'; M=   6, -14, -80, -19, -14, -10, -14, -55,   1, -11,  -3,  -1, -11, -48, -10,  -9,  -1,   1,   5, -19,  -7, -13;
/M: SY='S'; M=   2,   8, -80,   7,   1, -21,   0, -58, -20,  -6, -20, -15,   7, -42,  -1,  -9,  11,   7, -15, -29, -14,   0;
/M: SY='C'; M=   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='H'; M=   *,   *,   *,   *,   *,   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='N'; M=  -1,  -1, -70,  -4,  -4, -18, -25, -10, -13,  -3, -14,  -7,   3, -16, -10,  -4,   3,   0,  -4, -28, -14,  -3;
/M: SY='E'; M=  -5,  -1, -70,   0,   2, -19,  -9, -30, -16,  -4, -16, -10,  -2,  -1,  -2,  -7,  -2,  -6, -15, -25, -14,  -1;
/M: SY='E'; M=  -6,  -2, -70,  -2,   3, -19, -25, -30, -15,  -1, -15,  -9,  -2,  -5,   2,  -4,  -3,  -5, -15, -23,  -8,   1;
/M: SY='P'; M=  -3,   1, -70,   2,   1, -17,  -8, -30, -20,  -5, -20, -15,   0,   3,  -6,  -9,   2,  -2, -16, -26, -15,  -3;
/I:         I0=0; I=-1;
/M: SY='E'; M=  -1,   0,-110,   1,   6, -20, -10, -30, -19,  -1, -18, -11,  -1,  -4,   4,  -5,   0,  -5, -17, -24, -12,   4;

• UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  
• Total number of hits in UniProtKB/Swiss-Prot: 138 hits in 132 different sequences
  
• Number of hits on proteins that are known to belong to the set under consideration: 138 hits in 132 different sequences
  
• Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  
• Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  
• Number of known missed hits: 5
  
• Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 3
  
• Precision (true hits / (true hits + false positives)): 100.00 %
  
• Recall (true hits / (true hits + false negatives)): 96.50 %
  

• MATRIX_TYPE: protein_domain
  
• Scaling database: UniProtKB/Swiss-Prot: window20
  
• Matrix author: N_Hulo
  
• Taxonomic range: Archaea, Prokaryotes (Bacteria)
  
• Maximum known number of repetitions of the pattern in a single protein: 3
  
• VERSION: 1
  

C554_CHLAA  (P33325), C554_NITEU  (Q57142), CYC32_DESNO (P38554), 
CYC3A_DESAF (P94690), CYC3B_DESAF (P94691), CYC3_DESDE  (P00134), 
CYC3_DESGI  (P00133), CYC3_DESSA  (P00135), CYC3_DESVH  (P00131), 
CYC3_SHEFN  (O33731), CYC9_DESDA  (Q9RN68), CYCR_ALLVD  (O82947), 
CYCR_RHOVI  (P07173), CYCR_ROSDO  (P26278), CYCR_RUBGI  (P51758), 
CYCX_NITEU  (Q50926), FRD2_SHEFN  (Q9Z4P0), FRDA_SHEFN  (Q07WU7), 
FRDA_SHEFR  (P0C278), FRDA_SHEON  (P83223), HAO_NITEU   (Q50925), 
HMEE_ARCFU  (O29747), HMWC_DESVH  (P24092), MAUG_METME  (Q50233), 
NAPB_AZOBR  (Q8VU46), NAPB_BRAJP  (Q8KY07), NAPB_CUPNH  (P39186), 
NAPB_ECOLI  (P0ABL3), NAPB_HAEIN  (P44654), NAPB_PARPN  (Q56351), 
NAPB_RHIGA  (Q9Z3W3), NAPB_RHOS4  (Q53177), NAPB_RHOSH  (O88160), 
NAPB_SHIFL  (P0ABL4), NAPB_WOLSU  (Q7M963), NAPC_ECO57  (P0ABL7), 
NAPC_ECOL6  (P0ABL6), NAPC_ECOLI  (P0ABL5), NAPC_HAEIN  (P44655), 
NAPC_PARPN  (Q56352), NAPC_RHOS4  (Q53178), NIRT_PSEST  (P24038), 
NRFA_ALISL  (B6EH98), NRFA_ARCB4  (A8ERP8), NRFA_BACFN  (Q5LI95), 
NRFA_BACFR  (Q64ZA7), NRFA_BACTN  (Q8A7V7), NRFA_CITK8  (A8AN26), 
NRFA_DESAD  (C6BYZ2), NRFA_DESPS  (Q6ARF1), NRFA_ECO24  (A7ZUU5), 
NRFA_ECO27  (B7UPN8), NRFA_ECO45  (B7MJT8), NRFA_ECO55  (B7LB19), 
NRFA_ECO57  (P0ABL0), NRFA_ECO5E  (B5Z1D1), NRFA_ECO7I  (B7NSN2), 
NRFA_ECO81  (B7N2T7), NRFA_ECO8A  (B7M7Y3), NRFA_ECOBW  (C5A163), 
NRFA_ECODH  (B1XCV6), NRFA_ECOHS  (A8A7H1), NRFA_ECOK1  (A1AIR1), 
NRFA_ECOL5  (Q0T9X8), NRFA_ECOL6  (Q8CVI1), NRFA_ECOLC  (B1IUI1), 
NRFA_ECOLI  (P0ABK9), NRFA_ECOLU  (B7NG13), NRFA_ECOSE  (B6I5T8), 
NRFA_ECOSM  (B1LPN5), NRFA_ECOUT  (Q1R3J6), NRFA_EDWI9  (C5BES4), 
NRFA_ERWCT  (Q6D613), NRFA_HAEDU  (Q7VNX8), NRFA_HAEI8  (Q4QLL8), 
NRFA_HAEIN  (P45017), NRFA_MANSM  (Q65RI4), NRFA_PARD8  (A6L890), 
NRFA_PASHA  (Q06PW6), NRFA_PASMU  (Q9CPL4), NRFA_PECCP  (C6DK80), 
NRFA_PHOPR  (Q6LSQ7), NRFA_PORGI  (Q7MTW1), NRFA_SALA4  (B5F2F2), 
NRFA_SALAR  (A9MGK5), NRFA_SALCH  (Q57GV0), NRFA_SALDC  (B5FRF3), 
NRFA_SALEP  (B5QZA1), NRFA_SALG2  (B5R941), NRFA_SALHS  (B4TEB5), 
NRFA_SALNS  (B4T1X2), NRFA_SALPA  (Q5PJ02), NRFA_SALPB  (A9N1R7), 
NRFA_SALPC  (C0Q554), NRFA_SALPK  (B5BJZ8), NRFA_SALSV  (B4TRK5), 
NRFA_SALTI  (Q8Z1Q9), NRFA_SALTY  (Q8ZKF5), NRFA_SHEAM  (A1S3A0), 
NRFA_SHEFN  (Q087T3), NRFA_SHEON  (Q8EAC7), NRFA_SHEPC  (A4Y382), 
NRFA_SHESA  (A0KSX7), NRFA_SHESH  (A8FRR9), NRFA_SHESM  (Q0HMH8), 
NRFA_SHESR  (Q0HRB0), NRFA_SHESW  (A1RNQ3), NRFA_SHEWM  (B1KFU9), 
NRFA_SHIB3  (B2TXA4), NRFA_SHIBS  (Q31TS5), NRFA_SHIFL  (Q83P93), 
NRFA_SHISS  (Q3YUR5), NRFA_SULDE  (Q9Z4P4), NRFA_VIBF1  (Q5E4J7), 
NRFA_VIBFM  (B5FEY0), NRFA_VIBPA  (Q87ND9), NRFA_VIBVU  (Q8D8E5), 
NRFA_VIBVY  (Q7MM23), NRFA_WOLSU  (Q9S1E5), NRFB_ECOL6  (P0ABL2), 
NRFB_ECOLI  (P0ABL1), NRFB_HAEIN  (P45016), NRFH_WOLSU  (Q9S1E6), 
TORC_ECO57  (P58359), TORC_ECOLI  (P33226), TORY_ECO57  (P58361), 
TORY_ECOLI  (P52005), TORY_HAEIN  (P44799), Y1237_ARCFU (O29031), 
YEBS_ECO57  (P0AD04), YEBS_ECOLI  (P0AD03), YFCC_ALLVD  (Q06536)

CYC31_DESNO (P00136), CYC3_DESAC  (P00137), CYC3_DESVM  (P00132), 
CYCX_DESDA  (P81040), NAPB_SHEON  (Q8EIJ4)

CYC31_DESVU (P81149), CYC32_DESVU (P81151), CYC35_DESAC (P81079)